LOCUS       NM_033477               2126 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus DNA segment, Chr 17, human D6S53E (D17H6S53E), mRNA.
ACCESSION   NM_033477
VERSION     NM_033477.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Allcock,R.J., Martin,A.M. and Price,P.
  TITLE     The mouse as a model for the effects of MHC genes on human disease
  JOURNAL   Immunol Today 21 (7), 328-332 (2000)
   PUBMED   10871872
  REMARK    Review article
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Lund,T., Shaikh,S., Kendall,E., Campbell,R.D., Hattori,M.,
            Makino,S. and Cooke,A.
  TITLE     RFLP analysis of the MHC class III region defines unique haplotypes
            for the non-obese diabetic, cataract Shionogi and the non-obese
            non-diabetic mouse strains
  JOURNAL   Diabetologia 36 (8), 727-733 (1993)
   PUBMED   8104833
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CR974444.18.
            
            On Mar 10, 2011 this sequence version replaced NM_033477.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CJ052280.1, SRR7345562.5110160.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                CR974444.18        62397-62445
            50-192              CR974444.18        62638-62780
            193-2126            CR974444.18        62917-64850
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.59 cM"
     gene            1..2126
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /note="DNA segment, Chr 17, human D6S53E"
                     /db_xref="GeneID:114585"
                     /db_xref="MGI:MGI:90673"
     exon            1..49
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /inference="alignment:Splign:2.1.0"
     exon            50..192
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /inference="alignment:Splign:2.1.0"
     exon            193..2126
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /inference="alignment:Splign:2.1.0"
     CDS             386..1267
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /codon_start=1
                     /product="uncharacterized protein C6orf47 homolog"
                     /protein_id="NP_258438.1"
                     /db_xref="CCDS:CCDS28686.1"
                     /db_xref="GeneID:114585"
                     /db_xref="MGI:MGI:90673"
                     /translation="MFLRRLGGWLPRPWGRKKSTKADLPAPEPRWVDSSPENSGSDWD
                     SAPETMGDVGPLKTKDSGTRRPPGAAPESSRDLKVDQLGSKRMDSLKRDKTASTIQEP
                     ARLESGGAIPKLDWDPVDSGGVKNLGVSAQGRLGTIGPEALLEKPGRRQKLLRWLRGE
                     PGAPSHYLQDPEEYLQISTNLTLHLLELLATALLALCSRPLRAILDALGLRGPVGLWL
                     HGLLCFLAALHGLHAVLSLLTAHPLHFACLFGLLQALVLAVSLREPVEDEETADWESE
                     GQEREAKEQREGPGRML"
     regulatory      2082..2087
                     /regulatory_class="polyA_signal_sequence"
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /note="hexamer: AATAAA"
     polyA_site      2126
                     /gene="D17H6S53E"
                     /gene_synonym="G4; NG34"
                     /note="major polyA site"
ORIGIN      
        1 ggccccacag ctactcgctg cgcgagcacc cagacgcctg ggtccccaga gacttcctgt
       61 tccttgagct cccttgggca gcgatttgaa ggttcctcag tttcaggacc gaaggaccct
      121 gggccaccac cttctttcct tcaatggaac accacctctc ccctttctgg ggcaccttgg
      181 gatgtggtct tgactgacac ggaagcaggc catttaccac acttggggct gtgtgagtcc
      241 tttctgaatt cagagtagga caatatcacc aagcagacac ctcttctgaa ccggaactga
      301 ttctggcttc ggaggagatc ctgagaatct tacgcagagt caggaagtgg tcacagattt
      361 gggaagcgca ttgcacagct cagtcatgtt ccttcgacgg cttggtggct ggctacctcg
      421 accttggggt cgaaagaaat caacaaaggc tgatttgcct gccccagaac ccagatgggt
      481 ggacagctcc ccggagaatt cggggagtga ctgggacagt gctccagaga ccatgggaga
      541 tgtggggccc cttaagacca aggattcagg aacacggaga ccccccgggg ctgctccaga
      601 gtctagcagg gacctcaaag tggatcaact ggggagcaaa agaatggatt ccctcaagcg
      661 ggacaagact gcctctacca ttcaagagcc tgcaagactg gagtctggag gggccattcc
      721 caaactagac tgggatcctg tggattcagg tggcgtgaag aaccttggag tgtccgctca
      781 agggagacta ggcaccattg ggccagaagc cctgttggag aaacctggtc gccgtcagaa
      841 gctgctgcgt tggttacggg gggaaccagg ggctccttca cattacctgc aggacccaga
      901 ggagtacctg cagatctcta ccaacttgac cctgcacctg ctggagctgc ttgccacagc
      961 cctgctggct ctgtgctcca ggccactccg agccatcttg gatgctttgg gccttcgagg
     1021 acctgtgggc ctctggcttc atgggctgct atgtttcctg gccgccctac atgggctcca
     1081 cgctgtgctg agcttactta ctgcccaccc cctgcatttt gcctgcctct ttggcttgtt
     1141 gcaggccctg gtgctggctg tcagcctccg ggaacctgtt gaagatgagg agaccgctga
     1201 ttgggagagt gaggggcagg agagggaggc caaggagcag agggaaggtc ccggaaggat
     1261 gttgtgactg ggagagggtg ggagcaaagg gtaaagatag tggggtggcc tttaggagga
     1321 aggtggggaa acccagattg taagcacaga gacctcaggg atggggagga aactcaggca
     1381 caggagctcc tgtcacactt gacagacagg gctggctagg atggccagta atggacaatg
     1441 ggacatcacc attgaagtca ccagcttttt tttttttttt tttttttttt ttttttggtt
     1501 tttttgagac agggtttctc tgtatagccc tagctgtcct ggaactcact ctgtagacca
     1561 ggctggcctc gaactcagaa atccgcctgc ctctgcctcc cgagtgctgg gattaaaggc
     1621 atgtgccacc atgcccagca aagtcaccag cttttgttat ttcttgcttt tacatttact
     1681 cacttttttt tttttttaaa tttccacctc cactttttaa aagcaaaata gaataaaagc
     1741 aaccgtggag aacggacacc acagggccct ttccaagcgc aggggtggat ggggccagag
     1801 gcaggacaga gatctctgca ttaagagttg atggggagac ccgtagtgtc ccttggatcc
     1861 taggactaga accgtttaga ggagagtgag gctttgaggg agaaggggct tcaggtgccg
     1921 cagtacctgc agtgagggtc tgcaggtcgg tgggagccag aagaaacaga gctgctgtgg
     1981 gctggattgg catgaggacc agtacagaag agctggcagc tctgaagggc agtgggggaa
     2041 gcaccgtgac tgcctctcca ctcaggcatt gctcactcag caataaatgt gccacactac
     2101 atcctaaata caccagtcta atgtga
//
