LOCUS       NM_001374130            1636 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus RIKEN cDNA D030056L22 gene (D030056L22Rik), transcript
            variant 1, mRNA.
ACCESSION   NM_001374130
VERSION     NM_001374130.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC134906.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC020125.1, AK145019.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-425               AC134906.3         36342-36766         c
            426-1636            AC134906.3         31572-32782         c
FEATURES             Location/Qualifiers
     source          1..1636
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 13.2 cM"
     gene            1..1636
                     /gene="D030056L22Rik"
                     /note="RIKEN cDNA D030056L22 gene"
                     /db_xref="GeneID:225995"
                     /db_xref="MGI:MGI:3583960"
     exon            1..425
                     /gene="D030056L22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..581
                     /gene="D030056L22Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C9orf40 homolog"
                     /codon_start=1
                     /product="uncharacterized protein C9orf40 homolog isoform
                     1"
                     /protein_id="NP_001361059.1"
                     /db_xref="GeneID:225995"
                     /db_xref="MGI:MGI:3583960"
                     /translation="MAKRRAAEPLTFRVPWKRLLLSDFPEEPPLWVPPSGTARPLKRQ
                     GDAGIMAEPASAPRKRRGGGDDRQELQGCSREPGEPPPGEQEEPRAAGGGDRVESAGS
                     PQVADGVHSQQPEEFWQYNTFQYWRNPLPPLDLAALEDVSANSLTETLEDKNEGVEID
                     MES"
     exon            426..1636
                     /gene="D030056L22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1612..1617
                     /regulatory_class="polyA_signal_sequence"
                     /gene="D030056L22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1636
                     /gene="D030056L22Rik"
                     /note="major polyA site"
ORIGIN      
        1 cacaacgtct cgtccgccct cgggacagcc gagctctgcg ctgcccttcg ccctccgccc
       61 gccgcccgcg cgaccctcgt ccctggccca tggccaagcg gcgtgcggct gagccgctca
      121 cgttccgcgt gccttggaag cggctcctgc tcagcgactt ccccgaggag ccgccgctct
      181 gggtcccgcc gtctgggacg gctcggcccc tcaagcgcca gggggacgcg gggatcatgg
      241 cggagcctgc gtctgcgccc cgcaagcgac gcggcggcgg ggacgacaga caggagctgc
      301 agggctgtag ccgggagccc ggagagccac ctcctggcga gcaggaggaa ccccgggccg
      361 cgggcggcgg cgacagagta gaaagcgcgg gcagcccgca ggtagccgac ggggtgcaca
      421 gccagcagcc tgaagagttt tggcagtata atacattcca gtattggagg aaccctctgc
      481 cacctcttga tctggcagct cttgaagatg tgagtgcaaa cagcctgaca gagacacttg
      541 aggacaagaa tgaaggagtt gagattgaca tggagtcctg acagaagcat ctgaagaaat
      601 gggattctct gaatttgagg cgacctgaag gaaaagttct tttccatact tgacatgatc
      661 cttttttcaa acctgaaaac taggaagggt tttgggataa ataactaatg actactgaat
      721 ctcctaatgg agagctgtcg agggtgtggg acagctgcag acaaaatact tgtgtttgca
      781 tttttaatga aaaagttttg ttcacgctct tgactttgaa gatgcttatc ttggaaaagg
      841 aggttttggc agtttcagag gaagccctca ggtctaccgc acttgttctg tcaaatgtcc
      901 ctttgcacca caaagcttat ttgtggtaca cggaatgaat acatttatac agctgatgct
      961 cataaatact cgctagtaca tcttattgga tccccttggt tgaacaaata ggagacttga
     1021 gtatctatgc aaaattaaaa tgtgagattg tttttgaaag ctaaccttgt tttacaagag
     1081 tgtaaactta aactagtgag aacttccatt tgggtagcgt gttttacctt tcgctatttg
     1141 ctgtttatta acagcatagg cgatgaatct agccaaacaa tggatagaga acagtaggaa
     1201 gcagacacct gcccctcctg ccttttctga ggtgaaagaa atgatctggt cagcttactg
     1261 attttgttct gaggacattt tttatatagt ttatattact ttagacctgt agttctcaac
     1321 actgatatag cactttagcc atttctgctc gagccctggt cctagagaga tctcagtcaa
     1381 ttatttgaag gtggttttac acataggttt ttgttttatt ttggtttttt gcaccgattc
     1441 tttatccctg tgttgtgcag atggggccag aaccactaga ctagcagcct ttcctgttta
     1501 aaggagatca ctagtgagag ctgaagcaat gcctcttcat tccttttgtc ggtatcttgt
     1561 tatgttactt gatttgtcat tactaagtta ttgtgttaca attttatttt taataaagta
     1621 tactgtttat gtttga
//
