LOCUS       NM_001347160            1403 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus CXXC motif containing zinc binding protein (Czib),
            transcript variant 2, mRNA.
ACCESSION   NM_001347160 XM_006503438
VERSION     NM_001347160.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1403)
  AUTHORS   Hansen,G.M., Markesich,D.C., Burnett,M.B., Zhu,Q., Dionne,K.M.,
            Richter,L.J., Finnell,R.H., Sands,A.T., Zambrowicz,B.P. and
            Abuin,A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL611936.11.
            
            On Nov 17, 2016 this sequence version replaced XM_006503438.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR and
            coding sequence compared to variant 1. The resulting isoform (2)
            has a shorter and distinct N-terminus compared to isoform 1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK050486.1, AK050533.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                AL611936.11        15802-15872
            72-155              AL611936.11        16095-16178
            156-212             AL611936.11        17441-17497
            213-294             AL611936.11        17931-18012
            295-326             AL611936.11        18198-18229
            327-404             AL611936.11        19310-19387
            405-470             AL611936.11        20849-20914
            471-1403            AL611936.11        22847-23779
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.18 cM"
     gene            1..1403
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /note="CXXC motif containing zinc binding protein"
                     /db_xref="GeneID:74098"
                     /db_xref="MGI:MGI:1921348"
     exon            1..71
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..548
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /note="isoform 2 is encoded by transcript variant 2;
                     UPF0587 protein C1orf123 homolog"
                     /codon_start=1
                     /product="CXXC motif containing zinc binding protein
                     isoform 2"
                     /protein_id="NP_001334089.1"
                     /db_xref="CCDS:CCDS84769.1"
                     /db_xref="GeneID:74098"
                     /db_xref="MGI:MGI:1921348"
                     /translation="MGKIALQLKATLENVTNLRPVGEDFRWYLKMKCGNCGEISEKWQ
                     YIRLMDSVALKGGRGSASMVQKCKLCARENSIDILSSTIKAYNAEDNEKFKTIVEFEC
                     RGLEPVDFQPQAGFAADGVESGTVFSDINLQEKDWTDYDEKAQESVGIFEVTHQFVKC
                     "
     exon            72..155
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            156..212
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            213..294
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            295..326
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            327..404
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            405..470
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            471..1403
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      695..700
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      718
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
                     /note="major polyA site"
     polyA_site      1399
                     /gene="Czib"
                     /gene_synonym="0610037L13Rik; 1110008H16Rik"
ORIGIN      
        1 gacgccggcc ttttacgacg ggtcggaaag cagctgtcgc agcgacttaa cgtggaccgg
       61 cagctatggg gaaaatcgca ctgcagctca aagccacgct ggagaacgtc acgaaccttc
      121 ggccagtggg cgaggacttc cggtggtacc tgaagatgaa atgtggcaac tgtggtgaga
      181 tttcagagaa gtggcaatac atccggctga tggacagcgt ggcgctgaaa ggaggccgag
      241 gcagtgcctc catggtccag aagtgcaagc tatgtgcacg ggaaaactct attgacattt
      301 tgagcagcac catcaaggct tacaacgctg aagacaatga gaagttcaag acgatagtgg
      361 agtttgagtg ccggggcctt gaaccagttg acttccagcc ccaggctggg tttgctgctg
      421 acggtgtgga gtcagggaca gtcttcagtg acattaatct gcaagaaaag gactggacag
      481 actatgatga aaaggctcag gagtctgtgg ggattttcga ggtcacccat cagtttgtga
      541 agtgctgaac tgtctgcccg caaacttgcc tgtaagaact aaggagagac acagcgccct
      601 gagcagcagt tcccatggag gcttctcatc tctgctctcc tagcacctgt accaagtctg
      661 catgccaggg tttgccgcag ttctaagtcc caccaataaa gcccctgttg gtgccacagt
      721 gctgcgtgaa ggtggtctga gaaatactcc ctccattaat aagattggac tctggaggtc
      781 tttgctttct aatccctatt ctgtacctga tccagtttgc atgtggctta tataaaggct
      841 ctctatctag ctcttaagaa ataggcaggt cagcctccag gatcaaaggc atgaaagcac
      901 aaatggcaga gaatcctatg gagtgctgct gtgaacccag tagttccagc ctaaaacact
      961 ccccgatgat gatggcacct ccgttagctg ctcatctcac acccagagct cactctatag
     1021 accatcaggc caccgcgggc acatacccat ctactctaca aagttcctgg ctgatggctc
     1081 tgttcacttg ctgtgataga gtacttcctg tcagagtcaa catgaaagtt ctgtggaatc
     1141 agactctgca tcccctgaag cacctattgc tggtacaatg tataccctgt tctacctgca
     1201 gacaactctt ggagtgaaga cagcagtcat tgcctcttaa gtctcgtggg accaaagatc
     1261 ccacacagca gacagagcta ttgagcgcag tactaggcaa taagtatgtt gtgccttcat
     1321 acctgggaaa cctgtttcca cacactattt ctccaatatt ctactggaga gaaaaaaaaa
     1381 agattgtatt tttaaattat gta
//
