LOCUS       NM_001368735            2224 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus cytochrome P450, family 4, subfamily f, polypeptide 40
            (Cyp4f40), transcript variant 2, mRNA.
ACCESSION   NM_001368735 XM_006524758
VERSION     NM_001368735.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2224)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2224)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT033759.32.
            
            On Feb 22, 2019 this sequence version replaced XM_006524758.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 both encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.116462.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849378
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 5' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-214               CT033759.32        119917-120130
            215-413             CT033759.32        120516-120714
            414-558             CT033759.32        123149-123293
            559-612             CT033759.32        128847-128900
            613-740             CT033759.32        128985-129112
            741-862             CT033759.32        130805-130926
            863-1133            CT033759.32        132036-132306
            1134-1200           CT033759.32        134962-135028
            1201-1330           CT033759.32        135213-135342
            1331-1464           CT033759.32        136526-136659
            1465-1529           CT033759.32        136743-136807
            1530-1612           CT033759.32        136935-137017
            1613-2224           CT033759.32        137334-137945
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 17.71 cM"
     gene            1..2224
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /note="cytochrome P450, family 4, subfamily f, polypeptide
                     40"
                     /db_xref="GeneID:631304"
                     /db_xref="MGI:MGI:3645508"
     exon            1..214
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            215..413
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     CDS             216..1790
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /codon_start=1
                     /product="cytochrome P450, family 4, subfamily f,
                     polypeptide 40"
                     /protein_id="NP_001355664.1"
                     /db_xref="CCDS:CCDS50060.1"
                     /db_xref="GeneID:631304"
                     /db_xref="MGI:MGI:3645508"
                     /translation="MRYLDLSWLGLGPMSASPWLLFFLVGISWFLARFLTQLYTLYAK
                     CQRLCGFPQPPKKNWFWGHLGMSPPTEEGMKQVTELVTTYPQGFMTWLGPIVPLITLC
                     HPDIIRSVLSASAAVAPKDDIFYSFLKPWLGDGLLVSAGDKWNRHRRMLTPAFHFNIL
                     KPYVKIFNDSTNIMHAKWLRLASGGSTRLNMFENISLMTLDTLQKCVFSFNSNCQEKP
                     SQYIAAILELSTLAVKRNEQLLMHVDLLYRLTPDGMRFYKACRLVHDFTDAVIQERRR
                     TLLKHGGDDIIKAKAKSKTLDFIDVLLLTKDEDGKELSDEDIRAEADTFMFRGHDTTA
                     SGLSWILYNLARHPEHQERCRQEVQELLRDRDPKEIEWDDLAQLPFLTMCIKESLRLH
                     PPVTMVSRCCTQDISLPDGRIIPKGVICIINIFGTHHNPTVWRDPEVYDPFRFDPENI
                     QARSPLSFIPFSAGPRNCIGQTFAMSEMKVALALTLLRFRILPDDKEPRRKPELILRA
                     EGGLWLRVEPLSTQAQ"
     exon            414..558
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            559..612
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            613..740
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            741..862
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            863..1133
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1200
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1330
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1464
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1529
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            1530..1612
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..2224
                     /gene="Cyp4f40"
                     /gene_synonym="EG631304"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgtgaccc tgacttggtt tcactgtgca gctggcttac taaacctcct ttcttggcct
       61 catgcccagg ccaggaggaa actgtcagat ctgggaaggt ttggctggca cacatgagcc
      121 cagccttcca ttgcttcctt taggcactta tccaaagagg ccccagaaga aagagattga
      181 ggtgctgcag aagaatcgcc actcctgaga gaaggatgcg atatctggac ttatcctggc
      241 taggactggg gcccatgtca gcctcaccgt ggctactctt tttcttggtt gggatttcct
      301 ggttcttggc ccggttcctc acgcagctat acactttgta tgcaaagtgt caacgtctct
      361 gtggtttccc tcagccaccc aagaagaatt ggttttgggg tcacctgggc atgtcccctc
      421 ctacagaaga aggcatgaag caggtgactg agctggtgac cacctatccc cagggcttca
      481 tgacctggtt aggccctata gttcctctca tcactctgtg ccaccctgat atcatccgat
      541 ctgtcctcag cgcctcagct gcggttgccc caaaggacga catcttctac agcttcttga
      601 aaccctggct cggggatggg ctcttggtga gtgctggtga caagtggaac cgccaccgac
      661 gcatgctgac acctgccttc catttcaaca tcctgaaacc ctatgtgaag attttcaatg
      721 acagcaccaa catcatgcat gccaagtggc tgcgcctggc ctcagggggt agcacccgtc
      781 tgaacatgtt tgagaacatc agcctcatga ccttggacac tttgcagaaa tgcgtcttca
      841 gcttcaacag caactgtcag gagaagccta gccagtatat tgctgccatc ttggagctca
      901 gtaccctggc tgtgaagaga aacgagcaac tgcttatgca tgtggacctg ctctaccgcc
      961 tcacgcccga tggaatgcgc ttctataagg cctgccgtct ggtacacgac ttcaccgatg
     1021 ccgtcatcca ggagcgacgt cgcactctgc tgaagcatgg tggtgatgat atcatcaagg
     1081 ccaaagccaa gtccaagact ttggacttca ttgatgtact gctgctaacc aaggatgaag
     1141 atggaaagga gctgtcagat gaggacatcc gagctgaagc tgacaccttc atgtttaggg
     1201 gccatgacac cacagccagt gggctctcct ggatcctgta caacttggcg aggcaccctg
     1261 agcaccagga gcgctgccgg caggaggtgc aggagctgct gagggatcgt gatcccaagg
     1321 agatcgaatg ggacgacctg gcccagctgc ccttcctgac catgtgcatc aaggagagtc
     1381 tgcggctgca tcccccagtc acaatggtct cccgatgctg cacccaggac atttccctcc
     1441 cagatggaag gatcatccct aaaggtgtca tctgcatcat caatattttt ggaacccatc
     1501 acaacccaac tgtgtggcgg gaccctgagg tctatgaccc cttccgtttt gatccagaga
     1561 acatccaggc tagatcacct ctgtcattta ttcccttctc agcggggcca aggaactgca
     1621 ttggacagac tttcgctatg agcgagatga aggtggcgct ggcgctgact ctgctgcgct
     1681 tccgcatcct gccagatgac aaggagccac gccggaagcc agagctgatc ctgcgcgcag
     1741 agggcgggct gtggctgcgg gtggagccgc tgagcaccca agcacaataa cccatctact
     1801 ttgccctggc tttccgtagt aagtaaatag gcgtgactct gctcttgaag attgcaaagc
     1861 acaaacagtg ctgtcacccg gcaagcaggg gctgctaagg atcctcccag tggtcagagt
     1921 tatggagtcc agctagttga tttgaaccaa agatccctga cttctctgga tggtcacagg
     1981 cccaacagct cctaatttat gacacatggt tctttcatgc tctttgccac caaagctacc
     2041 caacactaaa tcaagtggca tttcccgtca ccccctggaa atatgcagac gtgagatatt
     2101 ttcctttgtt cagatttttc tgaatgctca ttcctggggc tccccttccc tcatgtttat
     2161 ggtggccctc tctcttactt ttactatagc ctatacctca gaataaaata gttcttgttt
     2221 taaa
//
