LOCUS       NM_001081320            4210 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus cytochrome b-561 domain containing 1 (Cyb561d1),
            transcript variant 1, mRNA.
ACCESSION   NM_001081320 XM_893050
VERSION     NM_001081320.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4210)
  AUTHORS   Raja,R., Dumontier,E., Phen,A. and Cloutier,J.F.
  TITLE     Insertion of a neomycin selection cassette in the Amigo1 locus
            alters gene expression in the olfactory epithelium leading to
            region-specific defects in olfactory receptor neuron development
  JOURNAL   Genesis 62 (2), e23594 (2024)
   PUBMED   38590146
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB853561.1 and BC060107.1.
            
            On Apr 4, 2007 this sequence version replaced NM_001081320.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BB853561.1, AK087683.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-465               BB853561.1         1-465
            466-4210            BC060107.1         308-4052
FEATURES             Location/Qualifiers
     source          1..4210
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 46.86 cM"
     gene            1..4210
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /note="cytochrome b-561 domain containing 1"
                     /db_xref="GeneID:72023"
                     /db_xref="MGI:MGI:1919273"
     exon            1..208
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..750
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /EC_number="7.2.1.3"
                     /note="isoform 1 is encoded by transcript variant 1;
                     cytochrome b561 domain-containing protein 1; probable
                     transmembrane reductase CYB561D1"
                     /codon_start=1
                     /product="probable transmembrane reductase CYB561D1
                     isoform 1"
                     /protein_id="NP_001074789.2"
                     /db_xref="CCDS:CCDS38598.1"
                     /db_xref="GeneID:72023"
                     /db_xref="MGI:MGI:1919273"
                     /translation="MHSMEVGLVPAPAREPRLTRWLRRGSGILAHLIALGFTIFLTVL
                     SRPGTSLFSWHPVFMALAFCLCMAEAILLFSPEHSLFFFCSRKTRIRLHWAGQTMAIL
                     CAVLGLGFIISSKIRSEMSHLVSWHSWIGALTLLATGGQALCGLCLLCPRAARVSRVA
                     RLKLYHLTCGLVVYLMATVTVLLGMYSVWFQAQIKGTAWYLCLGLPLYPALVIMHQIS
                     SSYLPRKKVEI"
     exon            209..246
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            247..4191
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4171..4176
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      4191
                     /gene="Cyb561d1"
                     /gene_synonym="1600010M23Rik"
                     /note="major polyA site"
ORIGIN      
        1 gatagcaaac ccggaagaag cctctggtag ctggattgtg ccggccggcc tggcactgct
       61 atgcattcca tggaggtagg tctggttccc gctccagcga gggagccgag actgacccgc
      121 tggctgcgga gaggcagtgg gatcttggcg cacctgatag ctttgggctt caccatcttt
      181 ctgactgtgc tgtcccggcc cggaaccagt cttttctcct ggcaccctgt gttcatggcc
      241 ttggcgttct gtctctgcat ggctgaagct attctactct tctcacctga gcactccctg
      301 ttcttcttct gctctcgaaa aacccggatt cgactccact gggcagggca gaccatggcc
      361 atcctctgtg ctgtcctagg cttgggcttc atcatttcca gcaagatccg aagtgagatg
      421 tcccatttgg tgtcctggca cagctggata ggagccttga cactgttggc cactggagga
      481 caggcactgt gtgggctctg cctcctctgt ccacgagcag cccgggtctc aagggtggct
      541 cgcctcaagc tctaccatct gacgtgtggc ctggttgtct acctgatggc tacagtaacg
      601 gtgctcttgg gcatgtactc agtgtggttc caggcccaga tcaaaggtac agcctggtac
      661 ctgtgcctgg gactaccatt gtacccagcc ctggtgatca tgcaccagat ctccagctcc
      721 tacttgccaa ggaagaaggt ggagatatga acgcctccaa actctgaatc taggtgggag
      781 tcttgccttg gatttcaaca gttccttggt gatcttcaca ggacccactt cagaagtaga
      841 tgaatttttg cacttcatgg ctgagccaca atgtgcagaa accctagctg ctactgttga
      901 ggcatgatac agtgggctca aagggggaga tgccctactg ggtacaagtg gaaggtttgg
      961 gagaacctga aacctcactc ttggtgggag acagaagtat taggtggtgg taatggtgat
     1021 ggtgatggtg atggtggtga tttcttgtgt gcctgatgaa gagttctcct aggttatgaa
     1081 tgacagccac agatgctggg atccctattg agaaggcagt gctatcgaga gcccgtaacc
     1141 tctcaggcag tgctgtacaa tcaaccttag acaagttcca tatcttagga cctcagtttc
     1201 tgacatctga aggtccctta tctttaacat tggtgtctga cagattgatg ttgccgatac
     1261 cctcttagct ctggaccatg tgggcagctc aggatgtaat tctctcatcc attttccctc
     1321 tactccccta gaaggaccct tcagaaatta tgtcaacttg gttcctgaac caagaaacaa
     1381 gggccacgca cgaactgtgg aaagaaggga cccaggggag gtctcctgga caataaggta
     1441 gtaaaggcac tgaagtcact ttaaagttct tcagaggaac tgaaggcagt agccttacca
     1501 agcccttgcc tcctgggctc cttagctgag ctaaggactt ccttcaggct acctctgggt
     1561 atgctcctgc cattcattct cagggcagag tggtcctggg catcttactt ggcatgttgc
     1621 tccatggaac tattcttaag cttttagaac aaaataaaaa ccaaggagta ggcccctctt
     1681 gacctaagga agactctctc cctgttgccc gtctttcctt gtcgtttcct aagctttcct
     1741 tagttgctgt ctccggccag ctgggcctaa gagtaggatg atgttgataa ctgtgttctt
     1801 ccctgccgat gtacctcctt gatctgagtt ccctagcgca tccttggttg tgagggttac
     1861 atgtcagatt agtaagctgt ggtgtaggtc agtctaggag atgggctctc tatagatcct
     1921 aataaagact gaagactgct gaaccaggga aggtatccac gcagctttct acctcggaga
     1981 tagagccaat caaacactct gggagggagg cctgcagtat aggggctgga gcaccagttc
     2041 cagagacaag gtgtctgctt gcctatctca gatcctcttc tcccagtggc tcagaagcaa
     2101 ggcaggtggg attcagtaga ggaatgggga ctagggggca gaagtattct cagtggacct
     2161 caccgggctt tcctcaggga tctagcatga ctctctaaat acagcttgat gaacagaggt
     2221 ccctgcagtg cagaggggaa ctaactgttc ttggcttttc caaagccctc tctccggctc
     2281 aagccatcca gtgtgctgtg aacgtggagg ggatggttac ccggccacgt gaaagagacc
     2341 ctcttactag ggtcactttg ataaagggcg cccatctcct ttcctcatta aggccagtgc
     2401 tgggggctcc ctagggtggg ccaggtaagg ttcagcagct tgttctcaga gcacagaggc
     2461 gatgccagaa agcctgagcc tgcctgaggt gttgcctcct cccaggtggt gcgggggctg
     2521 gtgggcgggc gggcaggcgt gctgacagcc ggcagtttgc gtgggctgtg ccatctgatg
     2581 tctattcgca gccccgggag gaaggggagt catttatatt ctgcaggaag aaaggaccca
     2641 gctgtcgctt cctctgacca gtgggcctgg agggcatcgg tgcagagcac agaggaagag
     2701 tacaggtagt ggtggtctcc tgcttaggga tctgaccgta gtgtaggggg cagggcacca
     2761 ggaggagccc ttcttcctgt taggccagat tggggcgggg ctttcttccc tcccgtcttt
     2821 ccatcctagg gcagcagctg gacagccatt agtcctcagt gccagggtgc gcttcctcca
     2881 gctgggatct gtggctgccg gctgcggatg cctcctggct gaatgctccc tcttccccac
     2941 acctgccccc ttttgtagct tctaatgtct gaatactacc tgggcttctc agtagcaagg
     3001 aaggggcctt agcaggaaca caaatggctg tcctttggcc atgttccttg actagggaaa
     3061 gctagtagta gtcagcctgt tttgcttttt tcaaggggac actcaggatg ttcaagattt
     3121 ttttaaaaat tgccaatcat ttgcacaaat ttccatatca tgctaagttc tgattccata
     3181 tttgatggtg ttccaagctt gactatattc agactcaacc ttgagggcat tagaaagata
     3241 gttttatatc aaccccaagt gggcacacta tctgtggagt cctctcagga gcccctttgt
     3301 ccctcctatt ggggttgggg tggcagtgaa caaatgacag gagctctgca tctgagaact
     3361 cttgcttccc tctggctgac gccccatcca caataggctg ctatcagttg ccagcctatt
     3421 cttgctttgc ccttcaaagc aggccaccct cagcccatga cactgccctg ccccatctct
     3481 cagtgtcccc accttttcca ctcccatgca tggctgctgt gggtcttgtt ttttaaacct
     3541 cgctgtggga gatccaggca tcctccctga gccagctggc tgctgtgcca aggcctgttc
     3601 agagttaata ataatcatta gttgaatggt gctggggcct ttcagctcca gatctctaag
     3661 cacttgcagg ctgagtcagc cagtcacctt ccccctcttc ctgggctttg gagtgtaaca
     3721 gcatgggaag acactgtggg agagaagggg atcgggattc ttgctgcctg gctataccag
     3781 aggcttttct cctctgagag gaagcagtca ggccaagata cacagagaat acagtgtgct
     3841 cagctgagat ggccgtggcc gtggtagctg ataaccccaa gcctctagcg ctcctgtgta
     3901 cttgccttgg cttctggggg caccccaccc aaatgccctt aagcaagtct tgagagcaag
     3961 aaagtgtctg agtttgtacc cccgcaatgc cctggtctgt ggctggaaca aagatcctgt
     4021 gtgtcctgaa ctggaaggtg tatcagcctg gcaaagctac tttatgagtg gctcggctcc
     4081 gaacactggg tggcacaggc caactatttg cttcttatct tacctcacag ggatgttgtg
     4141 aggattcctc aagagaacaa ggctcaaagc attaaacaaa tggaaaacag aaaaaaaaaa
     4201 aaaaaaaaaa
//
