LOCUS       NM_018866               1175 bp    mRNA    linear   ROD 12-NOV-2024
DEFINITION  Mus musculus C-X-C motif chemokine ligand 13 (Cxcl13), mRNA.
ACCESSION   NM_018866
VERSION     NM_018866.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1175)
  AUTHORS   Luo,B., Zeng,X. and Luo,L.
  TITLE     Intrauterine adhesions repair with menstrual blood-derived
            mesenchymal stem cells via CXCL13-CXCR5 signal axis and its
            mechanism
  JOURNAL   Stem Cell Res Ther 15 (1), 380 (2024)
   PUBMED   39456064
  REMARK    GeneRIF: Intrauterine adhesions repair with menstrual blood-derived
            mesenchymal stem cells via CXCL13-CXCR5 signal axis and its
            mechanism.
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1175)
  AUTHORS   Choisez,A., Ishihara,S., Ishii,T., Xu,Y., Firouzjah,S.D., Haga,H.,
            Nagatomi,R. and Kusuyama,J.
  TITLE     Matrix stiffness regulates the triad communication of
            adipocytes/macrophages/endothelial cells through CXCL13
  JOURNAL   J Lipid Res 65 (9), 100620 (2024)
   PUBMED   39151591
  REMARK    GeneRIF: Matrix stiffness regulates the triad communication of
            adipocytes/macrophages/endothelial cells through CXCL13.
REFERENCE   3  (bases 1 to 1175)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   4  (bases 1 to 1175)
  AUTHORS   Xie,L., Wang,H., Wu,D., Zhang,F., Chen,W., Ye,Y. and Hu,F.
  TITLE     CXCL13 promotes thermogenesis in mice via recruitment of M2
            macrophage and inhibition of inflammation in brown adipose tissue
  JOURNAL   Front Immunol 14, 1253766 (2023)
   PUBMED   37936696
  REMARK    GeneRIF: CXCL13 promotes thermogenesis in mice via recruitment of
            M2 macrophage and inhibition of inflammation in brown adipose
            tissue.
            Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1175)
  AUTHORS   Cobo,I., Paliwal,S., Bodas,C., Felipe,I., Melia-Aloma,J.,
            Torres,A., Martinez-Villarreal,J., Malumbres,M., Garcia,F.,
            Millan,I., Del Pozo,N., Park,J.C., MacDonald,R.J., Munoz,J.,
            Mendez,R. and Real,F.X.
  TITLE     NFIC regulates ribosomal biology and ER stress in pancreatic acinar
            cells and restrains PDAC initiation
  JOURNAL   Nat Commun 14 (1), 3761 (2023)
   PUBMED   37353485
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1175)
  AUTHORS   Wada,R., Tifft,C.J. and Proia,R.L.
  TITLE     Microglial activation precedes acute neurodegeneration in Sandhoff
            disease and is suppressed by bone marrow transplantation
  JOURNAL   Proc Natl Acad Sci U S A 97 (20), 10954-10959 (2000)
   PUBMED   11005868
REFERENCE   7  (bases 1 to 1175)
  AUTHORS   Wang,C.C., Biben,C., Robb,L., Nassir,F., Barnett,L., Davidson,N.O.,
            Koentgen,F., Tarlinton,D. and Harvey,R.P.
  TITLE     Homeodomain factor Nkx2-3 controls regional expression of leukocyte
            homing coreceptor MAdCAM-1 in specialized endothelial cells of the
            viscera
  JOURNAL   Dev Biol 224 (2), 152-167 (2000)
   PUBMED   10926756
REFERENCE   8  (bases 1 to 1175)
  AUTHORS   Ansel,K.M., Ngo,V.N., Hyman,P.L., Luther,S.A., Forster,R.,
            Sedgwick,J.D., Browning,J.L., Lipp,M. and Cyster,J.G.
  TITLE     A chemokine-driven positive feedback loop organizes lymphoid
            follicles
  JOURNAL   Nature 406 (6793), 309-314 (2000)
   PUBMED   10917533
REFERENCE   9  (bases 1 to 1175)
  AUTHORS   Gunn,M.D., Ngo,V.N., Ansel,K.M., Ekland,E.H., Cyster,J.G. and
            Williams,L.T.
  TITLE     A B-cell-homing chemokine made in lymphoid follicles activates
            Burkitt's lymphoma receptor-1
  JOURNAL   Nature 391 (6669), 799-803 (1998)
   PUBMED   9486651
REFERENCE   10 (bases 1 to 1175)
  AUTHORS   Legler,D.F., Loetscher,M., Roos,R.S., Clark-Lewis,I., Baggiolini,M.
            and Moser,B.
  TITLE     B cell-attracting chemokine 1, a human CXC chemokine expressed in
            lymphoid tissues, selectively attracts B lymphocytes via BLR1/CXCR5
  JOURNAL   J Exp Med 187 (4), 655-660 (1998)
   PUBMED   9463416
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC146611.2.
            
            On Mar 29, 2023 this sequence version replaced NM_018866.2.
            
            Sequence Note:.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF044196.1, BC012965.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-106               AC146611.2         80458-80563         c
            107-239             AC146611.2         78725-78857         c
            240-320             AC146611.2         77528-77608         c
            321-1175            AC146611.2         76421-77275         c
FEATURES             Location/Qualifiers
     source          1..1175
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 47.29 cM"
     gene            1..1175
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /note="C-X-C motif chemokine ligand 13"
                     /db_xref="GeneID:55985"
                     /db_xref="MGI:MGI:1888499"
     exon            1..106
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /inference="alignment:Splign:2.1.0"
     exon            107..239
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /inference="alignment:Splign:2.1.0"
     exon            240..320
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /inference="alignment:Splign:2.1.0"
     exon            321..1175
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1149..1154
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /note="hexamer: AATAAA"
     polyA_site      1175
                     /gene="Cxcl13"
                     /gene_synonym="4631412M08Rik; Angie; ANGIE2; BCA-1; BLC;
                     BLR1L; Scyb13"
                     /note="major polyA site"
ORIGIN      
        1 acgcacagac tccgagctaa aggttgaact ccacctccag gcagaatgag gctcagcaca
       61 gcaacgctgc ttctcctcct ggccagctgc ctctctccag gccacggtat tctggaagcc
      121 cattacacaa acttaaaatg taggtgttct ggagtgattt caactgttgt cggtctaaac
      181 atcatagatc ggattcaagt tacgccccct gggaatggct gccccaaaac tgaagttgtg
      241 atctggacca agatgaagaa agttatatgt gtgaatcctc gtgccaaatg gttacaaaga
      301 ttattaagac atgtccaaag caaaagtctg tcttcaactc cccaagctcc agtgagtaag
      361 agaagagctg cctgaagcca ctatcatctc aaaagacaca cctgcacctt tttttttatc
      421 cctgctctga attttagata tgttcttagt taaagaattt ccaagaaaat aactcccctc
      481 tacaaacaaa catgactgta ggtaaaacaa agcaaaaaca aacaagcaaa caaacaaact
      541 aaaaaaaacc caatcctgca ggagctgaga gggaatgctc aagctccgtt gcatacccaa
      601 cccacatcct tgttccttaa gaaaggctat ttgagaacag gcatttagtg acaacccact
      661 tcagatgcat gtggtaatag atctgttgtt taatgttaaa ctatcctaga ttgtcgagga
      721 atgaaaaacc tacatgtcaa atgtgaactt gtagctcgta ctaacaagag gtttgcgaga
      781 tggacttcag ttattttgca cccttgtaaa acgcaggctt ccaaaatagt ctccagaagg
      841 ttcctgggaa gctggtgcaa tgccatcatg aggtggtgca aagcaggtct cctttagaga
      901 aaagcttcct gggggaaaca gtcctacttt gaaaggttgc ttgtataaga tttattgtct
      961 tgcattaaaa ccagtaacaa ttgaaagatc ctcagcttaa aggtccaggc tcttcagcag
     1021 tatacaaata tattcctttg cactgtgacc ctgatgatct atttttatta ttcatatctt
     1081 tcacacagac aaaataccag cctcttgtat cagattcttt aatgtttcct attcatctgg
     1141 tgtcattcaa taaatgtaat caaatgtttt gctta
//
