LOCUS       NM_198013               3189 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus CUE domain containing 1 (Cuedc1), transcript variant
            1, mRNA.
ACCESSION   NM_198013
VERSION     NM_198013.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Gurdziel,K., Vogt,K.R., Walton,K.D., Schneider,G.K. and
            Gumucio,D.L.
  TITLE     Transcriptome of the inner circular smooth muscle of the developing
            mouse intestine: Evidence for regulation of visceral smooth muscle
            genes by the hedgehog target gene, cJun
  JOURNAL   Dev Dyn 245 (5), 614-626 (2016)
   PUBMED   26930384
REFERENCE   3  (bases 1 to 3189)
  AUTHORS   VanBuren,V., Piao,Y., Dudekula,D.B., Qian,Y., Carter,M.G.,
            Martin,P.R., Stagg,C.A., Bassey,U.C., Aiba,K., Hamatani,T.,
            Kargul,G.J., Luo,A.G., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Assembly, verification, and initial annotation of the NIA mouse
            7.4K cDNA clone set
  JOURNAL   Genome Res 12 (12), 1999-2003 (2002)
   PUBMED   12466305
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ118464.1, CJ113091.1, BC131989.1, CK332869.1, CF950088.1,
            AK049250.1 and EL962896.1.
            
            On Feb 3, 2010 this sequence version replaced NM_198013.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript but encodes the shorter isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC024476.1, SRR7345562.727202.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-281               CJ118464.1         1-281
            282-345             CJ118464.1         283-346
            346-407             CJ113091.1         348-409
            408-418             CJ118464.1         409-419
            419-470             CJ113091.1         421-472
            471-496             CJ118464.1         473-498
            497-1116            BC131989.1         270-889
            1117-1308           CK332869.1         363-554
            1309-1770           CF950088.1         171-632
            1771-3173           AK049250.1         1755-3157
            3174-3189           EL962896.1         391-406
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 52.4 cM"
     gene            1..3189
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /note="CUE domain containing 1"
                     /db_xref="GeneID:103841"
                     /db_xref="MGI:MGI:2144281"
     exon            1..198
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            199..808
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             467..1633
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /note="isoform 1 is encoded by transcript variant 1; CUE
                     domain-containing protein 1"
                     /codon_start=1
                     /product="CUE domain-containing protein 1 isoform 1"
                     /protein_id="NP_932130.2"
                     /db_xref="CCDS:CCDS25226.1"
                     /db_xref="GeneID:103841"
                     /db_xref="MGI:MGI:2144281"
                     /translation="MTSLFRRSSSGSGGGGATGARGAGTGAGDGSTAPQELNNSRPAR
                     QVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLEAGGGSAYE
                     DSSDSEDSIPPEILERTLEPDSSEEEPPPVYSPPAYHMHVFDRPYLMAPPTPPPRIDV
                     PGSGQPASQRRYRNWNPPLLGSLPDDFLRILPQQMDSIQGHPGGSKPMSGEGGPPPAP
                     GPMACDQDSRWKQYLEDERIALFLQNEEFMKELQRNRDFLLALERDRLKYESQKSKSN
                     NAAVGNDGGFPSSVPGTSETNPTVSEDALFRDKLKHMGKSTRRKLFELARAFSEKTKM
                     RKSKKKHLPKLQSLGAAASTANLLDDVEGHAYEEDFRGRRQEVPKVEEALREGQ"
     exon            809..936
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1063
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1256
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1257..1340
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1412
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1413..1506
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1507..1565
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1566..1636
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..3180
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3149..3154
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3173
                     /gene="Cuedc1"
                     /gene_synonym="C330016O16Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggcagcttcg cagggacagc tgcatttctc gccgcccgcc gctaggaagc cggcctcgcc
       61 tcgctttctc cgcctcccgg cgcccagccg cgccgccgcg ccaccaagcc gggctgccgc
      121 tgccgccgcg ggaccgcgcc cctcccccgc cgcccgaccc cagcggcccc gcgggagcgg
      181 acgcgcgtgc ggtgctcggt gacaccgtca gtccgttgca gccccctgtg ccaggatgac
      241 tcgaggatgc ggatgatctg gagtccatct aaagcctggc cgaggtccgc atgccgccac
      301 caccctggtc cctgtcccct agcccgggcc gtgcattccc tccaggagga agcactgcag
      361 tgagttttcc gagcctgcgg agcaagcaag tggcccacga cggagggacc ccgggccagc
      421 ggcttcttgg tttgttggaa acattctccc gcagtggctc tgcaagatga ccagcctgtt
      481 tcgcaggagc agcagcggca gcggcggtgg cggggccact ggggctcgcg gggccgggac
      541 aggggctgga gatggcagca ctgcccctca ggagctcaac aacagccggc cggcccgcca
      601 ggtgcgccgc ctcgagttca accaggccat ggacgacttc aagactatgt ttcctaacat
      661 ggactacgac atcattgagt gcgtgctgcg tgccaacagc ggagcggtgg atgccaccat
      721 agaccagctg ttacagatga acctggaggc gggtggtggc agcgcctatg aggacagctc
      781 ggactcagag gacagcatcc caccggagat cctggaaagg actctggagc ccgatagctc
      841 tgaggaagag cccccgcctg tgtactcacc accagcgtac cacatgcacg tgttcgacag
      901 gccttacctg atggctcctc cgaccccacc tccccggatt gatgtcccag gctccggaca
      961 acctgcaagc cagagacgct acagaaactg gaacccaccc ctgctgggca gcctcccgga
     1021 tgacttcctc cgaatccttc cccagcagat ggacagcatt cagggtcacc ccgggggctc
     1081 caagcctatg agtggagagg gaggcccacc tccggcgcca gggcccatgg cctgtgacca
     1141 agacagccgc tggaaacagt acctggaaga tgagagaatt gccctcttcc tgcagaatga
     1201 ggaattcatg aaggagctgc agcgaaaccg ggacttcctc ctcgccctgg agagagaccg
     1261 attgaaatat gaatcccaga aatccaaatc caacaatgcg gcggttggaa atgacggtgg
     1321 ctttccctcc tctgtccccg gaaccagtga aaccaacccc actgtgtcag aagatgcctt
     1381 attcagggac aagttgaaac acatgggaaa atctacgcgc aggaagctgt ttgaactcgc
     1441 ccgagccttc tccgagaaga ccaaaatgag gaagtcaaag aagaaacatt taccgaagct
     1501 tcagtcgctg ggggctgctg catccacagc caacctcctg gatgacgtgg agggccatgc
     1561 ttacgaggaa gacttccggg gtaggcggca ggaggtgcct aaggtggaag aggccctaag
     1621 agaaggacag taagaggtgc cagcagcttc accttgccag agatgctctg actgggtggg
     1681 ggcaaccaga gagcagcacc agtgccctcc agctgcagcc cagacagacg gtgctcgcac
     1741 accaaggctc aggcttcttc agccacacag cccagcccag ccactgccgc tttccacaga
     1801 caggacttag aactttcaga gctgcttatg attggaggag gggcctggag ccttcgagac
     1861 agcagccagc cagccacaaa ccccatttgt agtctggctc ctctataggg gatgagcaga
     1921 aatgcaggaa accccccccc ctttccagaa agaaagaaag aaagaaagag aggaagaaga
     1981 aggatcccaa ggttccagtt aggaactgac aagatgaccc atgtggagat tctttgggcc
     2041 tgaagagagt tcggtttctt tcctatctct cctgacctgc cacagtgggt ccgatctata
     2101 ccctccccca agccgctgcg gccttccccc cccctccccc ccaaggtctc ctgcacctca
     2161 gccttgtcgg ggactgctga ctcttggctc caaccctgca cggaactctg gacacttcgg
     2221 tcttgtcggg tccagtttat agggctgctt ctattaaggg ctggctgtca cctccagcag
     2281 cctccatttg acccagccgg gatggggaga gtgaccccgg agctgtcgga ttctgtttag
     2341 gcagggtctt tagttaggct gaacacagaa acaggttcta aatttacatc acagtggagt
     2401 accccagggg ctggaccggt cctgctgttt tttgtaagag gggaaggtgc tggagtttaa
     2461 gagttggggt gaccccaaat gaaaaggtgc agactgacgt gcaagttgcc gaagttgcca
     2521 gcctcggcag agcggcaagc acctagaacg agaacttgcc gggtgcctca ggtggagaga
     2581 ccagaggcga tttaaggaac ctgcaccaac cactgccacg ggacggaggc cgcacccgtg
     2641 tcccgctcgc cccacgacct gggaacgcgc tgaccattta gagagatctg ggaagtctgg
     2701 acaggtgcgg gggtcctggt tgagaatggg atccgatgcg tgggtggtgg gggctgctaa
     2761 ggactggcag aaaatgggag cctggtgggc atgggaccgc aaacgcctca actcctgcgg
     2821 gtcagtcgag cttccccggg ctcggaagag aggtgtacgc agagagtgac caagtgggga
     2881 agcgtgcgca gccagtccgg gtgggggtgg ggaccacgtt ggctccgagc caggcccgtg
     2941 aaccctggag agaaagacag ctccccacct ccaggagccc cgggaggcta aactgagctc
     3001 cagacgtgtc tgggccctcc ctgctccaag gccgggcgcc ctcggggaag ccctaggttt
     3061 gtgtgtgtgt cactttgtta ttctttccct ccagtgtgtg tttttttttt tgtttttttc
     3121 cttggagctg tttcatagga attccggtaa taaagacttg gtgttctctt ggtgctctga
     3181 aaaaaaaaa
//
