LOCUS       NM_001384188            4742 bp    mRNA    linear   ROD 05-OCT-2024
DEFINITION  Mus musculus cortexin domain containing 1 (Ctxnd1), mRNA.
ACCESSION   NM_001384188 NR_045098 XR_105131 XR_107924
VERSION     NM_001384188.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4742)
  AUTHORS   Aboudehen,K., Farahani,S., Kanchwala,M., Chan,S.C., Avdulov,S.,
            Mickelson,A., Lee,D., Gearhart,M.D., Patel,V., Xing,C. and
            Igarashi,P.
  TITLE     Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant
            polycystic kidney disease and regulates mTOR signaling
  JOURNAL   J Biol Chem 293 (24), 9388-9398 (2018)
   PUBMED   29716997
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC129605.4.
            
            On Jun 4, 2020 this sequence version replaced NR_045098.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK137174.1, BY741468.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-216               AC129605.4         156978-157193
            217-353             AC129605.4         203709-203845
            354-4742            AC129605.4         204854-209242
FEATURES             Location/Qualifiers
     source          1..4742
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 48.35 cM"
     gene            1..4742
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /note="cortexin domain containing 1"
                     /db_xref="GeneID:100039239"
                     /db_xref="MGI:MGI:3780284"
     exon            1..216
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /inference="alignment:Splign:2.1.0"
     exon            217..353
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /inference="alignment:Splign:2.1.0"
     exon            354..4742
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /inference="alignment:Splign:2.1.0"
     CDS             413..592
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /codon_start=1
                     /product="cortexin domain-containing 1 protein"
                     /protein_id="NP_001371117.1"
                     /db_xref="GeneID:100039239"
                     /db_xref="MGI:MGI:3780284"
                     /translation="MEEPTPEPVYVDVDKGLTLACFVFLCLFLVVMIIRCAKVIMDPY
                     SAIPTSTWEEQHLDD"
     regulatory      1818..1823
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /note="hexamer: AATAAA"
     polyA_site      1843
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /note="major polyA site"
     regulatory      4716..4721
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
                     /note="hexamer: AATAAA"
     polyA_site      4742
                     /gene="Ctxnd1"
                     /gene_synonym="100039239; Gm2115"
ORIGIN      
        1 cacagccgct ctcggcggct gcccgaggct caccgcgccg ccgccgggcg ctgactcagc
       61 cgcagtccgg ctgctccgcc gagccggacc tggggagcgc gcgcccggag cctgcctgga
      121 gccacccgag gagcaccgca gcgcttgagc cgcgggcttc cggagctggg ggctggcccg
      181 tttaggtccc tgagcgcatc ggactcgctt ggccagccac ctacagctct gctctctgag
      241 aagccgcgct gactcgctgg ctccagctgt gatgctcagc tgtccgtcca tcttgtctcc
      301 tggaacagct caacccaggg tcttcctgaa gtggtgatca ctccagctgg cagggataga
      361 aaatggtacc agtcaggcca gagctctggg atcccacagt cactgctgca ggatggagga
      421 acctactccc gagcccgtct atgtggatgt ggacaagggg ttgaccttgg cttgcttcgt
      481 tttcctttgc ctcttcctcg tagtcatgat catccgctgt gccaaagtca tcatggaccc
      541 ctacagtgcc atccccacgt ccacctggga ggagcagcac ctggatgact gaggcacatg
      601 acaggtctca gtgtcctgga cacacctctg tacaccctgg ccaacatcct gcaagctctt
      661 gggagactgg gtgtggctat aaccactcag agatggagaa ggctcacctt cgccttactg
      721 actctcacat aaccaccaga gggaaatgcc agcatgcctg agccaaggca gtctggggaa
      781 gccaggggag aggaatgcta agccatgact caggattgtg gaggccatcc tgggactcca
      841 ctgggagaca gacagcagag tgatggtccc cagcccaggc tccagggcac ctttgagatc
      901 tggaccaaaa ccagatattc tggtctgtaa acagtgatca ggaggagact gaccttcaac
      961 tgcacagcac tgaggggttg ctgagagccc agtaccctct acagactagc actgatgagg
     1021 caggaaagat ggagacttca gggggcttct cctgcaaatt ctcacaaggc acacggctac
     1081 ttccaaactt tttttttttt taaaaaacta agatacagag ggaatatatt tttcctgtta
     1141 aaaatgagat gtgcatttta gacacttggg aaaatataga taaatagaag gaaagggggg
     1201 taaatagcac ttaaaatcca acctcccaga agccatcatt ttgatatatt tcttcaagtc
     1261 ttttttacag gaattttttt agtaattcac accatatgca tgatgctgca ttgattcgtc
     1321 tgatagctta aatatcttct gcctcacgag ataccatggc tgtttttagt gactgagagt
     1381 atactggcta ggccatggct gaatatagtc gttttcttta atctagttaa ctttctacta
     1441 tgtactcaca agaatcactt cacccagtaa ccttcagaag ctctgtatca caggagctcc
     1501 aggcaagagc tgggttctag acctgcttca gctattcaaa ggctgtaaaa gtcacctcac
     1561 ttcttggtgc ctccatttcc tcattgaaat atgggaagga gaagtctgtc tttctgtctg
     1621 tctgtctgct gtctgtgaaa gcagccatgt cacaagtggg agctgagact agcttgtctc
     1681 ttctgttgtc tttccttcat cttcttctcc cacacactgt cccgtgtgtc tgtgaccttg
     1741 ctgcaaggct cctaggtcac agcccacaac cttccacaac ctgcttcaac tcctgtgtcc
     1801 ttattatatg acccctaaat aaatcagcac ctgtgagctc caattttgtc atctataaaa
     1861 tgggggtgta acatctacct cacaaggttg tcgtggagat aaaatgggag gacatgagca
     1921 aaccctccct gccttctaag agccagagct cccagccagt gccacattca cagtggccag
     1981 cagacatttg cagggacacc aagacaccag gataccggac accaaggcac atggtctcat
     2041 gtcatcacca ctattgccat ttattttcac atatgtgagg ggtacctatt gtgtccttcc
     2101 agggtaggac ctgctgccct gtcaaaggag acctgtgctg tgggccttgg gccttctgca
     2161 ccacccacac tcaagcccta ggtccccatg caccttaggc tacctgggaa atgactttcc
     2221 aaagcactat cacactacat gacccctgaa agtatacact cttatcaagg tttgttttcc
     2281 agggtatggt gtgtgcgtgt gtttgtgtgt gtgtgtgtgt gtgtgtgtgt gtctgtctgt
     2341 ctgtctctgt atctctgtct gtctttctct ctctctttct ctctctttga ctctgtctct
     2401 gtctctctct cgctctctct gtctctctct ctcttacaca cacacacaca cacacacaca
     2461 cacacacaca cacactgtca gatgcaccaa gaaacagatg gcataggctc caaacctggc
     2521 actgaggcat cactttcagc ccacccttcc tcagaaacct ccctcagaga cagcatgctc
     2581 ttctgtggaa acctgttagg atgggtttgc aaaatcaatg ggggttgggg gaagaggttg
     2641 ttcccagctg ttaatgacag aacagcagga agaaggagag atctaaagag ctctgaagac
     2701 ctcctgtaga ggccttttgg agctctatgg gggaaaatca ggatgcccta ggctgtgttc
     2761 ctcagactgc ctgctgaagg tcacaccaca cctgcacatg aggaacctgc cagaagcagc
     2821 tcacctcctc cacagaccta cagaatcaca ctgggcatcc agggccagtt agcccggtta
     2881 gccaggcccc tggacagcag tacatccctg tttgagaaaa cctccccagg acctctgttc
     2941 tcagcaacac cccaaaacct ttagtatttt ctttatgctg gggaaataac atttgagaaa
     3001 agaggtgatt tcaatcccct ttcccaagag tcaagcttct aacaaggcaa caaaacaacg
     3061 ctttctattt gtacctacac cctcccttct catttgcatc ctcttacaag ccctacttgt
     3121 ccataagtac cattgcttgt gtaccttcag gcgctcattc aactagaatc acttcccagg
     3181 cagctttcac actgttgccc cttgtttgta tcagtgtgtg tgtgtgtgtg tgtgtgtgtg
     3241 tgtgtgtgtg tgagagagag agagagagag agagagagag agagagagag agagagagag
     3301 agatgtgtcc tggtgtattc atgtgagcat gtgcttgcca cagtgcatgt ttggagatca
     3361 gatgacaatc ttgggtgttg gtcctctcct tccttgttgc tcactggtga cattactccc
     3421 caggctagct ggctcacaag ctcccaggaa ttctcctctc tctggctgcc atctcccaca
     3481 ggcccactgg aatcccggag gtgcccttct gcacccactc actttcacat aagttctggg
     3541 aatagaagct caggccctca cacttgcaca gcaagcattt gcctactgag atgatttccc
     3601 agacccaccc cttttatcat ttttaaggtg tgtgtttttc ttgtttttat ggtttttttt
     3661 ttaacaaaag gattccctca tacatgcgca tgacactgca gaccactata ccaaatactt
     3721 cttatgctgt tttaaatttt cccattatat atgggaagaa agtggctgtg ctgatcctgg
     3781 gggtttctca ggagaggaga gaaggcagat tgatagaaca tcccttctca gagacacaca
     3841 agaaggaaag gggtgtcccc acgtctgcca cttgattatg tggaacaaag aagaaagggg
     3901 gtccccacct ctgtcactgg atcatgtgaa ggtgagaaag gtgaaagaat cccaagtttt
     3961 tcttctcttg tgctttccat tctgaaggat ggaggacgga catggtcctt tgccaccaga
     4021 gtggcctcaa gtttctgcta attgaaagaa agcctgcagt tgtgaataga gaaggaaaca
     4081 ccgcagcaaa atactcatgc tgaaggctgg aagttggcat agaggaaatg aagagaaaag
     4141 gatagttata gagtcatcca caagtcaggg aagaaggcac actctctatg gcagagagta
     4201 ggtcacagtc tccagagaaa ggcatctagt ggctggaatc aagctgctgc cggtgatgag
     4261 ctgtgtggaa gtccctccgt gttacctcca gctttcagca aggcagatgt gtagtccttc
     4321 tgtggctttg taatttgcag tgagggcatc tgtgtgatga ccacagaaag ggcccagctg
     4381 ccccagagac aagtgggtaa taaaaatatt cagaatcagg aaaggcaact catatccatc
     4441 ataaggaaag tggtccctgg gcgtgatcag ggtctgattg acacaagtgg taggacccat
     4501 cggccccagt gtggcattat caatgactat cacagacact ttacttttcc aattaatttt
     4561 caaatgtcca cgtgctttgt tttattttgg tggagtgatt ttgttttggg gtatggaact
     4621 catggccatg tacatatgag gccagggctc tgtcattgat gtttgtccct aaccccatat
     4681 atcttgctgg aatgaaaaca aatgtctctc catccaataa agttttccca ggattccaaa
     4741 ga
//
