LOCUS       NM_001134697            1472 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus cortexin 3 (Ctxn3), mRNA.
ACCESSION   NM_001134697 XM_001477678
VERSION     NM_001134697.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1472)
  AUTHORS   Lee,B.R., Budzillo,A., Hadley,K., Miller,J.A., Jarsky,T., Baker,K.,
            Hill,D., Kim,L., Mann,R., Ng,L., Oldre,A., Rajanbabu,R., Trinh,J.,
            Vargas,S., Braun,T., Dalley,R.A., Gouwens,N.W., Kalmbach,B.E.,
            Kim,T.K., Smith,K.A., Soler-Llavina,G., Sorensen,S., Tasic,B.,
            Ting,J.T., Lein,E., Zeng,H., Murphy,G.J. and Berg,J.
  TITLE     Scaled, high fidelity electrophysiological, morphological, and
            transcriptomic cell characterization
  JOURNAL   Elife 10, e65482 (2021)
   PUBMED   34387544
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1472)
  AUTHORS   Kaiser,M., Wojahn,I., Rudat,C., Ludtke,T.H., Christoffels,V.M.,
            Moon,A., Kispert,A. and Trowe,M.O.
  TITLE     Regulation of otocyst patterning by Tbx2 and Tbx3 is required for
            inner ear morphogenesis in the mouse
  JOURNAL   Development 148 (8) (2021)
   PUBMED   33795231
REFERENCE   3  (bases 1 to 1472)
  AUTHORS   Georgas,K.M., Chiu,H.S., Lesieur,E., Rumballe,B.A. and Little,M.H.
  TITLE     Expression of metanephric nephron-patterning genes in
            differentiating mesonephric tubules
  JOURNAL   Dev Dyn 240 (6), 1600-1612 (2011)
   PUBMED   21491542
REFERENCE   4  (bases 1 to 1472)
  AUTHORS   Georgas,K., Rumballe,B., Valerius,M.T., Chiu,H.S.,
            Thiagarajan,R.D., Lesieur,E., Aronow,B.J., Brunskill,E.W.,
            Combes,A.N., Tang,D., Taylor,D., Grimmond,S.M., Potter,S.S.,
            McMahon,A.P. and Little,M.H.
  TITLE     Analysis of early nephron patterning reveals a role for distal RV
            proliferation in fusion to the ureteric tip via a cap
            mesenchyme-derived connecting segment
  JOURNAL   Dev Biol 332 (2), 273-286 (2009)
   PUBMED   19501082
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY076743.1, AK042789.1 and BB684996.1.
            
            On Sep 5, 2008 this sequence version replaced XM_001477678.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY076743.1, AK042789.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-41                BY076743.1         1-41
            42-1447             AK042789.1         2-1407
            1448-1472           BB684996.1         345-369
FEATURES             Location/Qualifiers
     source          1..1472
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 32.15 cM"
     gene            1..1472
                     /gene="Ctxn3"
                     /note="cortexin 3"
                     /db_xref="GeneID:629147"
                     /db_xref="MGI:MGI:3642816"
     exon            1..351
                     /gene="Ctxn3"
                     /inference="alignment:Splign:2.1.0"
     exon            352..1472
                     /gene="Ctxn3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1449..1454
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ctxn3"
                     /note="hexamer: AATAAA"
     polyA_site      1471
                     /gene="Ctxn3"
                     /note="major polyA site"
ORIGIN      
        1 agactcactg agaggaggat actgcctcta ctcactgaag cagaatcctc cgaagagttg
       61 ctgaggcaga actgaaatca tggcttgcct caaagaagca gctgtatcgg ctgctaatga
      121 cgcctcagca cagaaagacg atgctccttt aactcagggg ttttaatggg aagtttcgga
      181 gcctgagaga caacagcttt agagctgggt gtgccatcag ctgctcgctg ctacctctct
      241 gtctcctgct tgaactcagc ctggccggga agaatggaaa ccagacaggc ttttaactac
      301 ctgtaactgt ttcaccagga gatgaatcaa gcgtttgccc agccagatca gataactcag
      361 cccctccagg gagcagccac catgatctct gcaaactgat gatggaagaa aggggaagca
      421 gaagatactg tgctctggat tccctggacg atggatggag gacagcctgt tccttcaccc
      481 ctggtacccc ttgggaacgg atcagattat agcatgtctc tggaacagaa aacaacattc
      541 gtttttgtga tcctgttgtt catctttttg ggcatcctca ttgtcaggtg cttccgaatt
      601 cttctagacc catatcggag catgccaacc tcaacatggg ctgatgggct tgaagggctg
      661 gagaaagggc agtttgacca tgcccttgct tagtggggac acagtaggct gccctcccaa
      721 ggagcaaatc ttcctctttg ttaatgttct taacaaatcc aattttaacc atgaatggcc
      781 ctaggataac aacccattat ttcataaacc tgctattgtg ttaaaggtgt cttatttgag
      841 gataatggaa agtttctatt actagagccc aagtaggaag gtgcaagcat ttatgtctac
      901 tcaatgaatg ttgttgaaga tattgtaaaa ccaagcgcac caacaagcgc accaacactt
      961 gcgaagatgt cgctgtcaaa tgaagcactc tctgctcaga acaagtaatg agtaattaga
     1021 gaagatcggg tatgagtctg agtacaagtc atgtctctca attttacttt gtgctttgtg
     1081 cacatttatg tcctgggcag ggtgaggaag cctgtgtaga gacgacatca aggggctact
     1141 tatttcttgc aaagcagggg gctccaggaa gcagtggtag gcttaggaaa aatagttatt
     1201 tacctggtaa ctctggatgg gaatgctatc attttcacta ccagtcctaa tccaatctct
     1261 gtattcctat agctaacaca tttaaatgca ctgatgtata atttgaatct actgtactta
     1321 catttgtgat ggaacttata ggttacaagc acaacttcaa ggttatattt ttaaaagaaa
     1381 gatgatcgct tatcaaaaag actttggctt taagaggagt atgcattttt atgtgcacat
     1441 agttaccaaa taaaaaaaat ctcaagatgc ag
//
