LOCUS       NM_030249               4946 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus CTTNBP2 N-terminal like (Cttnbp2nl), transcript
            variant 1, mRNA.
ACCESSION   NM_030249 XM_982812
VERSION     NM_030249.4
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4946)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4946)
  AUTHORS   Sugimoto,M., Sasaki,S., Gotoh,Y., Nakamura,Y., Aoyagi,Y.,
            Kawahara,T. and Sugimoto,Y.
  TITLE     Genetic variants related to gap junctions and hormone secretion
            influence conception rates in cows
  JOURNAL   Proc Natl Acad Sci U S A 110 (48), 19495-19500 (2013)
   PUBMED   24218568
REFERENCE   3  (bases 1 to 4946)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   4  (bases 1 to 4946)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   5  (bases 1 to 4946)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK029901.1 and AC166156.4.
            
            On Jul 17, 2009 this sequence version replaced NM_030249.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029901.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2363              AK029901.1         2-2364
            2364-4946           AC166156.4         40474-43056
FEATURES             Location/Qualifiers
     source          1..4946
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 45.88 cM"
     gene            1..4946
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /note="CTTNBP2 N-terminal like"
                     /db_xref="GeneID:80281"
                     /db_xref="MGI:MGI:1933137"
     exon            1..162
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /inference="alignment:Splign:2.1.0"
     exon            163..285
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /inference="alignment:Splign:2.1.0"
     exon            286..393
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /inference="alignment:Splign:2.1.0"
     exon            394..624
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /inference="alignment:Splign:2.1.0"
     exon            625..732
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /inference="alignment:Splign:2.1.0"
     exon            733..4946
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3100..3105
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /note="hexamer: ATTATA"
     polyA_site      3119
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /note="major polyA site"
     regulatory      4930..4935
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /note="hexamer: AACAAG"
     polyA_site      4946
                     /gene="Cttnbp2nl"
                     /gene_synonym="mKIAA1433"
                     /note="major polyA site"
ORIGIN      
        1 aatcccagcc tggctctccc aaacaaaagg gatcttgcgg ccccaggagg agccgggatg
       61 actttggaga agccccgcct tcaggcggcg aggattggtt tcagagccgc aagggtaaag
      121 ctatgattgg cgagggtatc tgcctgtcac tgccgccggc ggtgttggac actttcccac
      181 catgccgaca acagtttaaa tatctgtcag ctttctaaaa gtttaactga aggaaacctc
      241 taagacttcg tacctgagga ccaaagtgca gccaccaatt atcagacttt caggatgaat
      301 ctggaaaaac tcagcaagcc tgaactcctg acactgttca gtatccttga aggagaactt
      361 gaagcaagag accttgttat agaagcttta aaggcccaac acagagatac tttcattgaa
      421 gaacgctatg gaaaatataa catcagtgac cctctaatgg ctcttcagag agattttgaa
      481 acactgaagg agaaaaatga tagtgagaag cagccagtgt gcacaaaccc cctctctgtc
      541 ctcaaggcgg tgatgaagca gtgcaagaac atgcaggagc gcatgctgtc ccagctggcc
      601 gcagccgaga gcaggcaccg caaggtgatc ctcgaccttg aagaagaaag acagaggcat
      661 gcacaggaca ctgctgaagg agatgatgtc acctacatgc tggagaagga gagggagaga
      721 ctgacgcagc agttggaatt tgaaaagtcc caagtgaaaa agtttgaaaa agaacaaaag
      781 aagctgtcca gtcagttgga ggaggagcgc acccgccaca agcagctctc ttccatgctg
      841 gtgctcgagt gcaggaaggc cactagcaag gcagccgagg aagggcagaa ggccggagag
      901 ctgagcctga aactggacaa ggagaagagc cgggcgagca agctagagga agagttggca
      961 gccgagagga agcggggcct gcagacggag gcccaggtgg agaagcagct gtctgagttc
     1021 gatatcgaaa gggagcagct gagagccaaa ctgaaccgag aggagaaccg gacccgtgcc
     1081 ctgaaggagg aggtggagag cctgaagaag cttgtgaaag acctagaggc tgcccagcag
     1141 caccgcagca ccagtgagca gggcagggag ccagtgacca tgtccagagg cacagccacg
     1201 gagcctccca tgcgagtgtc tgcgttttgt caaacagaga gtgttcagac agaaagaagc
     1261 cacgggagtg tcataaccaa gctgacagac actggtcttc caggtcccac cacggctgct
     1321 tactcatatg ctaaagctaa tggccactgt gacccagaga tacagactac cagggagttg
     1381 acctcagaca gcagcacaga aaaccaaggg cctccacggg agaaatctgc agtagcggct
     1441 caggagaaac cagtggagaa tggtgggtgt cctgtaggaa ctgagactcc agtcacgatg
     1501 cctagtcacc tcccttccag tggcagctcc ctgtctccca gcagcacagc ctcttcctct
     1561 ctgacatcat ctccttgctc ctccccagtt ctaaccaagc gtctcttggg gtcagcagcc
     1621 agcagcccgg gctaccagtc ttcctaccaa gtcgggatca accagcgctt ccatgccgct
     1681 cggcacaaat ttcagtccca ggcggatcag gatcagcaag ccagcggtct ccagagccct
     1741 ccatccaggg acctgtcccc taccctgtta gacaactctg ctgccaagca gctggcccga
     1801 aacacagtca ctcaggtgct ctccagattc actaaccaag ggccaattaa gcccgtctct
     1861 cccaacagtt ctccctttgg gacagactac cgaaatctgg ccagcactgc cagcccaaga
     1921 ggtgacacca gccattcacc cactccaggg aaagtgtcca gccctctgag ccccctctct
     1981 ccaggaatca agtccccaac catccccaga gctgagagag gaaaccctcc accaatcccg
     2041 cccaaaaagc ctggcctcac cccttcgcag tctgccacca ctccagtaac caagactcat
     2101 tcccaggcat cctccctggc cgccacagaa gacctcgcca gcagctgctc ccccagtgcc
     2161 gtggtggcca atggcaaaga tgttgagata cttttgccta ccagcagcta gtccctaggg
     2221 ctgagtctcc acatttgaca ttccatcaga ctcgggccaa gagctcagcg ttaaaccctg
     2281 gagtcaaatc atgttattta tttgatagta gctacagcca tctgtataat acattcagtg
     2341 tatttacctt tttgtatttt tttaagtaga aattgaatac tttggatttt tatgactcac
     2401 ctctttgtac taagctagaa ggggacctca tagacatagc gcatctcaag ctctgcactt
     2461 gccagcgtgc tgcgacgagg cggctgactg gggaccaggc ggtgctgctg ccagtcgggg
     2521 agctagaatt cattactcag cactcatttc aaattatgca gaagcggttc gtgcagattt
     2581 ttattccaga tgaacatgtt ttaaaagtgc ctgaaatcgc ctgccacggg aatgtgattc
     2641 tgcggcagaa acaaaagaca gagcatttct tgcagcaaat gagatcctct gtgaatctga
     2701 atgtcaaaaa accaacactg cttttaatcc tctctgactg tttaatgcca gctttgtgtt
     2761 ctgaaccgag gtttgcataa gtagagtgga aatccttctg aagggcggga actctgtcag
     2821 gctgagctct gtaaagccct caagaaaccc tccagaacac ttagcagttg gggtgctgat
     2881 tttcttgtgc ttttgaaaac ttaagtcatt ctccgtttcc tgcatcactt cttgagtagt
     2941 gaagtcacgt ctccattcaa atccaccctc aagcatcggc catgggaact tctgattctg
     3001 gttgctttta cttgaatagg aaatgacata atgaactctt tattctgtga tcaaaaagca
     3061 ataacttaaa agtcagtctt tgtaatactg taagtcagaa ttatacagat tttaccaaat
     3121 tgttacattc actctccatg ctgccagcac ttctatctat ggaaccaaat gggcgtatat
     3181 ctgtatctgt atagtacaca ccccttttac atgttcagca ttctcacact caagcacata
     3241 agtattagtg caattgtatc tctggagctt gcagtgtagc ataaaggaca aagtagaatc
     3301 aatcgcatgt taagattacc taccaaagca attagatgtg acttggagcc agtcagtcaa
     3361 caaagaaatc catttgacaa ggaagtggac aatcccaaac taagctcaca tcatcagcat
     3421 cataggaaag cccattaaat cgtcctagtg ccacagaact cagctagcca tgtgagtgag
     3481 tgagacagca cagcccctca agtgctatcc actcagccat agcatcctag ccccgtgtaa
     3541 tggggccacc cctttgagcc ccagctcctg tcatgcaaaa attgcagatg gaggttacca
     3601 attctctaaa cgttcatgga attgagattc ccacaagaag attctcattc tgattttaaa
     3661 tgttttttaa atgctgctga ttagacaaac atggctgcaa atgactttag cttgcaggct
     3721 accaagctgc agcctctccc tccctagaac ctgtgctgtt tcccttgtag tgagtttgta
     3781 cagacagaaa cccccaggct tctccactgt gtcagctaca tctgaccaag tccacagagc
     3841 aggacagcct tgctcttggc aagcagaacc cccgacacac cagctcagga cactggttac
     3901 acagtttttt atccagagta agagagagga aggccttggt gtctttacat aaattgttct
     3961 ggccagcatc tacccagaag cccctggcct actgtaaccg tttattggga aggagaatgg
     4021 gtgatcattg gaaacacctg atcatgtttg caaaaccaaa ggattcagtg ggcccattca
     4081 gatgagtcac aaggaattag aaattgattt tcttcttgaa ccacagagct gaaaacaaaa
     4141 agtctcccta ataatttagc taatagctct tagttatatt tttattaacc ctttgagtca
     4201 gtgggcaaga ggcaggtgat taaaatcttg gtgggcaagt caacaacagg gtatactgtt
     4261 gactctccag cttacagttt aaatggttaa ggtaaatgca tgacacatga aagtgtggct
     4321 ggtgtctgct gaaatgatgg agacatgtga aactgtcccg agcgatcctg catggaattt
     4381 actcctattg cggagccaaa atagaccagt gatgatcaaa cgctgaacct tctcctcagg
     4441 agagactgca gggcctcagt gttcttacct ctcttgcttt aaatggtaat cttaaaagct
     4501 gtgttgtgct cttcctctgt ttggagacag atatatatag agaaagagaa atgctatagg
     4561 ggagtttatt tcttgggggg gatgcactga acaatatttc ttttacagta taatacaggg
     4621 gtgggatatg caaaagaaat gtgtattttt gctagttcct atcttctgag ataataagca
     4681 caatcctgaa atggatccaa taattcagct agatattata gattagtatt tcagtttgca
     4741 gtagattgtg agtgtgtgcg ctaagtaaaa gttccatgat tcacaatttg ggtattaacc
     4801 atatcaaaga agctgttact ggtcagcaga atctaatgat gtgctcggtg taacacaagc
     4861 gttaactaag tcattaacat ttgtaaggcc aagtgcagaa gtcttcattt ttatagtaga
     4921 ctacattaaa acaagttaaa tcataa
//
