LOCUS       XM_030246440            2855 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cystinosis, nephropathic (Ctns), transcript
            variant X3, mRNA.
ACCESSION   XM_030246440
VERSION     XM_030246440.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246440.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..2855
                     /gene="Ctns"
                     /note="cystinosis, nephropathic; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 8 ESTs, 319 long SRA reads, 1 Protein, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:83429"
                     /db_xref="MGI:MGI:1932872"
     CDS             403..1533
                     /gene="Ctns"
                     /codon_start=1
                     /product="cystinosin isoform X2"
                     /protein_id="XP_030102300.1"
                     /db_xref="GeneID:83429"
                     /db_xref="MGI:MGI:1932872"
                     /translation="MDPSLTLPDFSSLLGASASRTTDQQKVLQKSTVSLTAPPTVKLE
                     NGSSTNVDITLGHPLNSTLVITFEVTFRSKNLTIVELPDEVIVPRGEKNASFQVTSQN
                     IGQVTVFLHGNHSNQTCPRIRFLVIHSRIVSIINQVIGWIYFMAWSVSFYPQVIQNWR
                     RKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNGVNPVDSNDAFFS
                     LHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLF
                     CFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQ
                     WTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKKPGYDQLN"
ORIGIN      
        1 tgacagctgg cccctctttc acacaaagtc ggcggagctc agagagtcct tacactccta
       61 agcggtttct ggtgcgagat tgttgctttt ggtgaggtct gtccaccaag cctgggaagc
      121 tgtcagcatt ctgcctacat gtatgcctgc aggccaaaag aggacatcag atctcattac
      181 agatggttgt gagccatcat gtaggtgctg gaaattgaac tcaggacctc tggaagaaca
      241 gccagtgctc tgaacctctg agacatctct ctagcctaag ttctgagaag tcagagacca
      301 tgaggaggaa ttggctgctt attttgaccc tttttctctt gatgttcata gagaagtatg
      361 gagcagtgga agctactgta aaagtaagaa cctagcattg gaatggatcc cagcctcact
      421 ctgccagact tttcttctct gttgggggca tcagcatcaa ggacaacgga tcaacagaaa
      481 gtcctccaga agtcaactgt cagtctcact gctcctccca ccgtgaagct ggaaaatggc
      541 agttcaacca acgtcgacat cacccttggg catccactaa attcgacctt ggtgatcact
      601 tttgaagtca cgtttcgctc aaaaaatctg actattgtgg agcttcctga tgaagttata
      661 gtgcctcgcg gagagaaaaa tgcctctttc caagtgactt ctcaaaatat tggacaagtg
      721 actgtttttc tgcatggaaa tcattccaac cagacctgcc ccaggatccg gttcttggtg
      781 atacacagca gaatcgttag catcataaac caggtgattg gctggatcta cttcatggcg
      841 tggtctgtct ccttttaccc acaagtgatc cagaactgga gacggaaaag tgtcattggt
      901 ctcagctttg atttcttggc cctgaacttg acgggcttcg tggcctacag tgttttcaac
      961 atcggtcttt tgtgggtgcc ctatatccag gaggagtttc tcctcaaata ccccaatggt
     1021 gtgaaccccg tcgacagtaa tgatgccttc ttcagcttgc atgctgtcgc cctcaccctg
     1081 attgtcatcc tgcagtgctg cctgtatgag cgaggcaacc agcgtgtgtc atggccctcc
     1141 attggcttcc tggtactcgc atggctcttt gtcctagtca ccatgattgt ggctgcagtc
     1201 ggtatcacca catggctcca gttcctcttc tgcttctcct acatcaagct catcatcaca
     1261 ctgatcaagt atttcccaca ggcctatatg aacttctact acaaaagcac caagggctgg
     1321 agcattggcg gtgtgctcct cgattttaca gggggcagct ttagcctcct ccagatgttc
     1381 ctccagtctt acaataatga ccaatggaca ttgatcttcg gagacccaac caagttcgga
     1441 cttggcgtct tcaccatctt ctttgatgtt gtcttcttca tccagcactt ctacttgtac
     1501 agaaagaaac cagggtacga ccagttgaat tagaatccag agacccagtg taaacagcca
     1561 gggcctgggc cctggtagga aaggttgtat ccagcaaagg ccagagaagc agctggcaca
     1621 cagggctgga acagtatgcc aacaagagca gcattctctt cctcaagaat caaaagcctt
     1681 aagctcagcc tgcctgtctt catccaggcc tctcctgaac catggaggac tccctctctg
     1741 gaacagacac ctgactctgc ttgagactga aagctagact tgaggcagtc tctcccaact
     1801 ttaaagctcc agccctctgc tggaggcacc cagccctcct gcgtcttgat ataccatctc
     1861 tctctcttta aggcttcagg cagcacacac aggtccagac agccatccca gccagaactg
     1921 ggcatcatgt ttgcagctga tgaccttgcc ccaaagcacc aatatttctg ggagcagctt
     1981 gaaaagctaa ccttgcaact gggagagcca agggtgcttt gtcccaccac agtgttcaca
     2041 gagaccaagc agccaggtgc tgtggcccat ggacttgaag gtgctgatgc tggtggtgga
     2101 ggggagagaa ctgtgggatc aagctttggg gtccttgctc tcggggccac tttccttatg
     2161 ctcattctat ataacgctgc tctagtaact gcagaacaag aggcccaggc cagtgcctgg
     2221 taaagtatat ttctgatccc tgaggtgcct gccagattgg tctgaagtgg acccgtacct
     2281 gctgccctcc ggatctttgc acacaaagat accacagtac cttttttatt tttattttac
     2341 ctccaaggta tattttaaaa tggcttttct tttgccctct ttcctacctc cactttctga
     2401 gagtcggatg gagcaccatc ttgagtcccc agactccccg taaccttaca cctatggagc
     2461 aggtactcag gaccagcctg tgccttagaa gcccatcagt caatcagtaa gctgccctgg
     2521 atgggaaggg aggcctcctt ccccagcccc agactgagac tccaactcct cagctgttga
     2581 ggagcctcag cgcacagggg cttacctcct atgttgcttg tggtcccacc ctgatcccac
     2641 acctccttcc ttctcatccc attattcttc ctacgccagg tagggaagga accagggtgt
     2701 gccttgagtt tatcaatctg tttcttttgt ttcttataag acgaatattg agggatcctt
     2761 gtatttcttt cttttgtatt tttttcttgt tcggtttcat ttttgtggcg tgtgtgtgtg
     2821 tccttaatta aaaggtggtt tgtttcttat ttgta
//
