LOCUS       XM_030246439            2701 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cystinosis, nephropathic (Ctns), transcript
            variant X2, mRNA.
ACCESSION   XM_030246439
VERSION     XM_030246439.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030246439.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..2701
                     /gene="Ctns"
                     /note="cystinosis, nephropathic; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     mRNAs, 8 ESTs, 309 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 28 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:83429"
                     /db_xref="MGI:MGI:1932872"
     CDS             249..1379
                     /gene="Ctns"
                     /codon_start=1
                     /product="cystinosin isoform X2"
                     /protein_id="XP_030102299.1"
                     /db_xref="GeneID:83429"
                     /db_xref="MGI:MGI:1932872"
                     /translation="MDPSLTLPDFSSLLGASASRTTDQQKVLQKSTVSLTAPPTVKLE
                     NGSSTNVDITLGHPLNSTLVITFEVTFRSKNLTIVELPDEVIVPRGEKNASFQVTSQN
                     IGQVTVFLHGNHSNQTCPRIRFLVIHSRIVSIINQVIGWIYFMAWSVSFYPQVIQNWR
                     RKSVIGLSFDFLALNLTGFVAYSVFNIGLLWVPYIQEEFLLKYPNGVNPVDSNDAFFS
                     LHAVALTLIVILQCCLYERGNQRVSWPSIGFLVLAWLFVLVTMIVAAVGITTWLQFLF
                     CFSYIKLIITLIKYFPQAYMNFYYKSTKGWSIGGVLLDFTGGSFSLLQMFLQSYNNDQ
                     WTLIFGDPTKFGLGVFTIFFDVVFFIQHFYLYRKKPGYDQLN"
ORIGIN      
        1 tgacagctgg cccctctttc acacaaagtc ggcggagctc agagagtcct tacactccta
       61 agcggtttct ggtgcgagat tgttgctttt ggtgaggtct gtccaccaag cctgggaagc
      121 tgtcagttct gagaagtcag agaccatgag gaggaattgg ctgcttattt tgaccctttt
      181 tctcttgatg ttcatagaga agtatggagc agtggaagct actgtaaaag taagaaccta
      241 gcattggaat ggatcccagc ctcactctgc cagacttttc ttctctgttg ggggcatcag
      301 catcaaggac aacggatcaa cagaaagtcc tccagaagtc aactgtcagt ctcactgctc
      361 ctcccaccgt gaagctggaa aatggcagtt caaccaacgt cgacatcacc cttgggcatc
      421 cactaaattc gaccttggtg atcacttttg aagtcacgtt tcgctcaaaa aatctgacta
      481 ttgtggagct tcctgatgaa gttatagtgc ctcgcggaga gaaaaatgcc tctttccaag
      541 tgacttctca aaatattgga caagtgactg tttttctgca tggaaatcat tccaaccaga
      601 cctgccccag gatccggttc ttggtgatac acagcagaat cgttagcatc ataaaccagg
      661 tgattggctg gatctacttc atggcgtggt ctgtctcctt ttacccacaa gtgatccaga
      721 actggagacg gaaaagtgtc attggtctca gctttgattt cttggccctg aacttgacgg
      781 gcttcgtggc ctacagtgtt ttcaacatcg gtcttttgtg ggtgccctat atccaggagg
      841 agtttctcct caaatacccc aatggtgtga accccgtcga cagtaatgat gccttcttca
      901 gcttgcatgc tgtcgccctc accctgattg tcatcctgca gtgctgcctg tatgagcgag
      961 gcaaccagcg tgtgtcatgg ccctccattg gcttcctggt actcgcatgg ctctttgtcc
     1021 tagtcaccat gattgtggct gcagtcggta tcaccacatg gctccagttc ctcttctgct
     1081 tctcctacat caagctcatc atcacactga tcaagtattt cccacaggcc tatatgaact
     1141 tctactacaa aagcaccaag ggctggagca ttggcggtgt gctcctcgat tttacagggg
     1201 gcagctttag cctcctccag atgttcctcc agtcttacaa taatgaccaa tggacattga
     1261 tcttcggaga cccaaccaag ttcggacttg gcgtcttcac catcttcttt gatgttgtct
     1321 tcttcatcca gcacttctac ttgtacagaa agaaaccagg gtacgaccag ttgaattaga
     1381 atccagagac ccagtgtaaa cagccagggc ctgggccctg gtaggaaagg ttgtatccag
     1441 caaaggccag agaagcagct ggcacacagg gctggaacag tatgccaaca agagcagcat
     1501 tctcttcctc aagaatcaaa agccttaagc tcagcctgcc tgtcttcatc caggcctctc
     1561 ctgaaccatg gaggactccc tctctggaac agacacctga ctctgcttga gactgaaagc
     1621 tagacttgag gcagtctctc ccaactttaa agctccagcc ctctgctgga ggcacccagc
     1681 cctcctgcgt cttgatatac catctctctc tctttaaggc ttcaggcagc acacacaggt
     1741 ccagacagcc atcccagcca gaactgggca tcatgtttgc agctgatgac cttgccccaa
     1801 agcaccaata tttctgggag cagcttgaaa agctaacctt gcaactggga gagccaaggg
     1861 tgctttgtcc caccacagtg ttcacagaga ccaagcagcc aggtgctgtg gcccatggac
     1921 ttgaaggtgc tgatgctggt ggtggagggg agagaactgt gggatcaagc tttggggtcc
     1981 ttgctctcgg ggccactttc cttatgctca ttctatataa cgctgctcta gtaactgcag
     2041 aacaagaggc ccaggccagt gcctggtaaa gtatatttct gatccctgag gtgcctgcca
     2101 gattggtctg aagtggaccc gtacctgctg ccctccggat ctttgcacac aaagatacca
     2161 cagtaccttt tttattttta ttttacctcc aaggtatatt ttaaaatggc ttttcttttg
     2221 ccctctttcc tacctccact ttctgagagt cggatggagc accatcttga gtccccagac
     2281 tccccgtaac cttacaccta tggagcaggt actcaggacc agcctgtgcc ttagaagccc
     2341 atcagtcaat cagtaagctg ccctggatgg gaagggaggc ctccttcccc agccccagac
     2401 tgagactcca actcctcagc tgttgaggag cctcagcgca caggggctta cctcctatgt
     2461 tgcttgtggt cccaccctga tcccacacct ccttccttct catcccatta ttcttcctac
     2521 gccaggtagg gaaggaacca gggtgtgcct tgagtttatc aatctgtttc ttttgtttct
     2581 tataagacga atattgaggg atccttgtat ttctttcttt tgtatttttt tcttgttcgg
     2641 tttcattttt gtggcgtgtg tgtgtgtcct taattaaaag gtggtttgtt tcttatttgt
     2701 a
//
