LOCUS       NM_001408305            6146 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus CBP80/20-dependent translation initiation factor
            (Ctif), transcript variant 5, mRNA.
ACCESSION   NM_001408305 XM_006525967
VERSION     NM_001408305.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 6146)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 6146)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 6146)
  AUTHORS   Kim,K.M., Cho,H., Choi,K., Kim,J., Kim,B.W., Ko,Y.G., Jang,S.K. and
            Kim,Y.K.
  TITLE     A new MIF4G domain-containing protein, CTIF, directs nuclear
            cap-binding protein CBP80/20-dependent translation
  JOURNAL   Genes Dev 23 (17), 2033-2045 (2009)
   PUBMED   19648179
REFERENCE   4  (bases 1 to 6146)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   5  (bases 1 to 6146)
  AUTHORS   Garcia-Frigola,C., Burgaya,F., Calbet,M., Lopez-Domenech,G., de
            Lecea,L. and Soriano,E.
  TITLE     A collection of cDNAs enriched in upper cortical layers of the
            embryonic mouse brain
  JOURNAL   Brain Res Mol Brain Res 122 (2), 133-150 (2004)
   PUBMED   15010206
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113528.8, AC120176.7 and AC120156.9.
            
            On Jun 15, 2022 this sequence version replaced XM_006525967.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14995045.1843895.1,
                                           SRR13948564.5070108.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-282               AC113528.8         139945-140226       c
            283-491             AC113528.8         79686-79894         c
            492-563             AC113528.8         66782-66853         c
            564-637             AC113528.8         54259-54332         c
            638-742             AC113528.8         53222-53326         c
            743-818             AC113528.8         48181-48256         c
            819-895             AC120176.7         31109-31185
            896-1388            AC120176.7         74320-74812
            1389-1757           AC120176.7         76082-76450
            1758-1913           AC120176.7         124169-124324
            1914-1967           AC120156.9         14254-14307
            1968-6146           AC120156.9         16069-20247
FEATURES             Location/Qualifiers
     source          1..6146
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 51.06 cM"
     gene            1..6146
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /note="CBP80/20-dependent translation initiation factor"
                     /db_xref="GeneID:269037"
                     /db_xref="MGI:MGI:2685518"
     exon            1..282
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            283..491
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     CDS             312..2183
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /note="isoform 2 is encoded by transcript variant 5"
                     /codon_start=1
                     /product="CBP80/20-dependent translation initiation factor
                     isoform 2"
                     /protein_id="NP_001395234.1"
                     /db_xref="GeneID:269037"
                     /db_xref="MGI:MGI:2685518"
                     /translation="MENSSAASASSEAGSSRSQEIEELERFIDSYVLEYQVQGLLTDK
                     TEGDGESQRTQSHISQWTADCREQLDGSCSFSRGRAPPQQNGNKDNSLDMLGTDIWAA
                     NTFDSFSGATWDLQPEKLDFTQFHRKVRHTPKQPLPHIDREGCGKGKLEDGDGISLND
                     IEKVLPTWQGYHPMPHEAEIAHTKKLFRRRRNDRRRQQRPPGGNKPQQHGDHQPGSAK
                     HNRDHQKSYQGGSGPHPSGRPTHHGYSQNRRWHHGNMKHPPGDKGEAGSHRNAKETVT
                     VENPKLEDGPGDTGHSGLEPPCSPDTLTPAASERPTPQLPGGPEAEIKHKDTVLPERL
                     RERPKITLLQSSKDRLRRRLKEKDRDIPNPTETSAPLRCVLCVPHVPQDEVAVETSSP
                     QPSKMDRLMEILNSMRNNSSDVDAKLTSFMEEAQNSTNSEEMLGEIVRTIYQKAVSDR
                     SFAFTAAKLCDKMALFMVEGTKFRSLLLNMLQKDFTVREELQQQDVERWLGFITFLCE
                     VFGTMRSSTGEPFRVLVCPIYTCLRELLQSQDVKEDAVLCCSMELQSTGRLLEEQLPE
                     MMTELLASARDKMLCPSESMLTRSLLLEVIELHANSWNPLTPPITQYYNRTIQKLTA"
     exon            492..563
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            564..637
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            638..742
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            743..818
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            819..895
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1388
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            1389..1757
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            1758..1913
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            1914..1967
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     exon            1968..6146
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      6146
                     /gene="Ctif"
                     /gene_synonym="Gm672"
                     /note="major polyA site"
ORIGIN      
        1 actctcctac attctctttc cctgtgtcag tactgggatc attttttttt tccttcctct
       61 actccctccc tctgcctgcc cctccctccc tgtctccctt ccctccctcc ctcccctctc
      121 gactgggtcg gtccgctgag gtgccggatc cccctcacgg ctgggacgcg ccgaactccc
      181 agcaggagtc cgctctttgc agcctggtcc ctcccttccc cttccctgcc cccttccccc
      241 accccgacgc gggctccgcg cggcagccag aggaaccccg agcagccggc cccggtccct
      301 gagcccgagg aatggagaac tcctcagcag cttcagcctc ctctgaggca ggaagcagcc
      361 gctcccagga gatcgaggag ctggagcgct tcattgacag ctacgtgctg gagtaccagg
      421 tgcaggggct gctgaccgac aagacagagg gtgacggcga gagccagagg acacagtccc
      481 atatctccca gtggacggct gactgcagag agcagctgga tggtagctgt tccttctcca
      541 gagggcgagc cccgccacag cagaatggca acaaggacaa ctccctggac atgctgggca
      601 cagatatctg ggccgccaat acctttgatt ccttcagtgg tgccacctgg gacctgcagc
      661 ctgaaaagct ggacttcacc cagttccatc ggaaggtccg ccacacaccc aagcagcccc
      721 tgccacacat cgacagagaa gggtgtggaa agggaaagct ggaagatgga gatggtatca
      781 gcctgaatga cattgagaag gtcctcccga cctggcaggg ctaccatccg atgccccacg
      841 aagcagagat tgcacatacc aagaagttgt tccgaaggag gagaaatgac cgaagacggc
      901 agcaaagacc tccaggaggg aacaagcccc aacagcatgg tgaccatcag ccaggcagtg
      961 ccaaacacaa cagggaccac cagaaatctt accagggggg ctcagggccc cacccctcag
     1021 ggaggcccac acaccatggc tacagccaga accgacgctg gcatcacggc aacatgaaac
     1081 atccaccggg agacaaggga gaagcgggca gccaccgcaa cgccaaagag accgtgaccg
     1141 ttgagaaccc caaacttgaa gacggcccag gggacaccgg acacagtggc cttgagcccc
     1201 cctgcagccc tgacactctg accccagcag cttccgagag accaacccct cagctgccag
     1261 gggggccgga ggctgagata aagcataaag acactgttct tcctgagcgt ctcagggagc
     1321 ggcccaaaat caccctgctc cagtcttcca aagacaggct gaggcgaagg ctgaaggaaa
     1381 aggaccggga catcccgaat cccactgaga cttcagctcc actgaggtgt gttttatgtg
     1441 tcccccatgt cccccaggac gaagtggcag tagagacaag cagccctcag ccaagcaaga
     1501 tggacaggct gatggaaatc cttaacagca tgagaaataa cagcagcgac gtggatgcca
     1561 agctcacctc cttcatggag gaggcgcaga actccaccaa ctctgaggag atgctggggg
     1621 agatcgtgcg gaccatctac cagaaggccg tgtcagaccg cagcttcgcc ttcacggccg
     1681 ccaagctctg cgacaagatg gccctcttca tggtcgaggg gaccaagttc cggagcctgc
     1741 tcctcaacat gctccagaag gacttcactg tgcgggagga gctgcagcaa caggatgtgg
     1801 agcgctggct gggcttcatc accttcctgt gtgaggtgtt cggcaccatg cggagcagca
     1861 ctggcgagcc cttccgagtg ctggtgtgcc ccatctacac gtgcctccgg gagctcttgc
     1921 agtcacagga tgtgaaggaa gacgcagtcc tctgctgttc tatggagcta caaagcacag
     1981 gccggctgct agaggagcag ctgccagaga tgatgacgga gctcctagcc agcgcaagag
     2041 ataagatgct gtgcccctca gagtccatgc taacccggtc cctgctcctg gaggtcatcg
     2101 agctccacgc caacagctgg aaccctctga cgccccccat cacgcagtac tacaacagga
     2161 ccatccagaa actgacagcc tgacagccca gccgaggggg cctggcaggc agcccgtggg
     2221 cagctggggc cctagtgcac agggccagat ggacaggcgc aaggacaggg gtggccctgg
     2281 cgggaaagag aactgagcag ggaggcaggt agccacggtg gccggtctgg agccagcgga
     2341 gaaggaggag attggatccc tcagaagggc tccccgtgca gccccacccc cacccacccc
     2401 caagcctgcg catgtggcag ctcacaccaa gggaaagcat gtctctttgt cctggtggtc
     2461 acccgtcctt gctctcttct cctcggctcc agtcctcccc accccctacc ttgcagccca
     2521 ttcccccctc ggccgccccc cccctccccc atagagcttt atgggaggag tctctgcctc
     2581 tcctcactgt ctacagctgc ctctctgcct cccacacctc tggccaccgc ttgggtcagc
     2641 caggactgct gaaggctgaa aaagtgggtc gagacagctc tcattgttcc cacgtgctgt
     2701 cagccacggt cgccaactgg cagcaggcag cgggcagcag atgtctggga ggacaaaggc
     2761 aggcacggtc cccaccagcc gcccataatt gatggccttt gtcagcccca gcggagctgg
     2821 agagaggctt ttttttctcc tctaacctcc gtgctccacc ctccaaccct cggcctccag
     2881 ccccagggcc cactgctccc cctggcagag aagggagagc cagggctcac agctcagcgt
     2941 gaaccctttt attttgtttt tcaaaactca gtggctttga agtctctttt cctcaatgaa
     3001 aatgccctag attttgagat cacatcgttc tcccctcaag gatcccctga ttagtgggag
     3061 actaagacct gccccccctc cccaaagaat ctagccacta gcagcttgcc agtagccagc
     3121 tagtaattgg aaacttctgc tccaatgggg gtccccactg gaatcctgtg ttcctgggcc
     3181 cctgtcctgc agtgcctctg ttctgtccac tgctagcttc caaagggctg gactgactgc
     3241 cttaggacct gccctggctc ctgttactgg caaacggggc cagaaacgag gctggcaaat
     3301 tacaaccaaa tgcaggtctt gttccgagca actgttgagg gaagagccca ctgctgactc
     3361 cacagatctt ggagcctcct tcatgatccc atgccgcatc ccaggcaaga cccacaagcc
     3421 ctacctccaa ggctgctggg gagaggggga atcattgggt cctgactggg acggtttggt
     3481 aggcagccag atagacaatg aagttcttca ggctagaaac aaagtcctgg tttcttggga
     3541 ggctctggtc ccagggagca accacttcta taaaggctag ggaggaggag gaggccatca
     3601 gagaggctgg tcttactggg atgactggtg gctcctcccc ctcatctctg gggagctgga
     3661 acccacactt tgatgacacc ccccccagaa catgtgtcca agcccatgca ctggacctgg
     3721 gcatacctag accatggtgg aggctctaaa ccagtggttc tcaacctgtg ggtcacgacc
     3781 cctgtagggg actcgaatga ccctttcaca agggtcacac atcagatatc ctgtgtatcc
     3841 gatatttacc tgacgattca taacggtagc aaaaattgac aattacggag tagcaacaaa
     3901 aataattttg tggttggggt tcaccactgc atgaggaaga ttaaagggtt gcagcatcag
     3961 ggaggttgag aaccactgct ctgtaggcct cctggttgaa ttcaggctgt ctcgagtaag
     4021 gatggtttct cctaactgtc ccaagtctag aagagtagaa agcgatcagg gtggaggagg
     4081 gagagttccc gagttctctg tggctgtctc caactcaagt gttcaggtcc caagatgggg
     4141 cctctgaaga gggctgctga gaaaaaggaa taggggtcac ggccacccca gctttgatct
     4201 ctttcctttt cttctcctcc ttcctagcct tcttttctct gctgcttgct gccttgtctc
     4261 ccatcccagc ccttaggctg agcctggagc ccagggacac gataagcccc acaggaggtg
     4321 tggagggaag agcagggcag gtggagtagc cagagaagac accagggaga tcctgctcct
     4381 gtggacttgg gcagcccagg ctcacaggca cctgctccct gcatcctctg gggccatggt
     4441 gtgcttacat gggctgcttc ccaggtgtga gcgtgtgagt gagtgagtgt gtgtgtgtgt
     4501 gtgtgtgtgt gtgtgtatgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgcatttgc
     4561 atctgctaag aatgaagcag gaccttgagg aaggaagaga ctgatggtag ggactcaagc
     4621 cacagtagag aggtctccta gactcctcat tgggctcaca gagtaggctc cacacagtgg
     4681 cttccaaaca ctgtgtagaa gagctagtgt cccctaaaga ggcagagacc atggctttgt
     4741 gggcaccatg ggcctaattc agctccttct tgatgtcctg ttggagggtc ttgcttcaag
     4801 agcatgccct cgtagggcct tgaggaccag tgtgaagatg caagatataa atatgtatac
     4861 atatataaat atatttttaa ttacatgttg tgtcccagtg gctccagact tgcagtttgc
     4921 ctagcgtatt ccattgtttg aaactacttc ctggtccatc ctgatatgac actttccagc
     4981 tgtctgtctg tctgtcttaa acgcagatct ctgctacttt ttcaaacatg gaaagaaacc
     5041 ctttttatta ttatcattat tattatttta ttttttaaag agacaacagt aaagcctaaa
     5101 atctaaaagg ctgagcacct tcctgtgggg gataactcaa gcaggaagta ggggacttgc
     5161 aggcacccac agaccctgac tccccgggac agagcctctc ctgctgcggg aggaacggcc
     5221 tatcaaagcc tgcctctgat gaatgaacag gaggcaaagc ctctctcaaa cttgtgttgt
     5281 cctgtctggc catgatgctc tgatattgag cctttttagg ctccgcccac ctgtcaggac
     5341 aagttggtcc ttgttttcca ctcaagtggc ctgctggtca ctgccctcct catgaactgg
     5401 ccgtattgcc taagctctgg gaccacagct cctgtcgggc tcttgaactc ccctggacaa
     5461 ccaacccctt ccaccaacca tggggaacct cttcccccac ccccaaaaaa accatcttca
     5521 cctgggcatc gttcctcatc cagtctgtaa acctttacag tttgcggatc atcttgtcca
     5581 tttgtgtaca tgtaaatgtt gacccaattg gtatttattc taatttttat tgtattttat
     5641 tttattctgt ctgagggtgg gggatgggaa gtacaccact ggtggcaacc agggcagagc
     5701 tgcagggatg cagcccagga agcaagagaa gcacctccct ggggccactc tagatggcag
     5761 cctgtcagta cccacaccct gggctgttat ctggaattgg aagccggaca gtgttcgtca
     5821 tcccatacac acaggcctgc ccgtggcatg atgtccctca gctgcctggc accatgttgg
     5881 gaaacctctg actggctctt cgaggaggtg ggttggagag actagaattc tcctctgctc
     5941 agggcactgg ccccagaaga tctatctgga gcctcactga gccagctggg agcctgacaa
     6001 caggacctac ctccctggag cagggtctgg agattgccgc caaagctatg ggccaaccct
     6061 gctcgcgccg accccttcca tctacccgta tatcctgctt cccagctgaa cccaaactac
     6121 aagtgggttt aaaaaaaata aataaa
//
