LOCUS       NM_001415874            3344 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus cleavage stimulation factor, 3' pre-RNA, subunit 1
            (Cstf1), transcript variant 1, mRNA.
ACCESSION   NM_001415874 XM_006500072
VERSION     NM_001415874.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3344)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3344)
  AUTHORS   Li,N., Cai,Y., Zou,M., Zhou,J., Zhang,L., Zhou,L., Xiang,W., Cui,Y.
            and Li,H.
  TITLE     CFIm-mediated alternative polyadenylation safeguards the
            development of mammalian pre-implantation embryos
  JOURNAL   Stem Cell Reports 18 (1), 81-96 (2023)
   PUBMED   36563685
REFERENCE   3  (bases 1 to 3344)
  AUTHORS   Ewart-Toland,A., Briassouli,P., de Koning,J.P., Mao,J.H., Yuan,J.,
            Chan,F., MacCarthy-Morrogh,L., Ponder,B.A., Nagase,H., Burn,J.,
            Ball,S., Almeida,M., Linardopoulos,S. and Balmain,A.
  TITLE     Identification of Stk6/STK15 as a candidate low-penetrance
            tumor-susceptibility gene in mouse and human
  JOURNAL   Nat Genet 34 (4), 403-412 (2003)
   PUBMED   12881723
REFERENCE   4  (bases 1 to 3344)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL833787.8.
            
            On Jan 4, 2023 this sequence version replaced XM_006500072.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.3550171.1,
                                           SRR13422601.2253503.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-186               AL833787.8         13699-13884
            187-387             AL833787.8         15957-16157
            388-665             AL833787.8         18666-18943
            666-863             AL833787.8         19080-19277
            864-1254            AL833787.8         20644-21034
            1255-3344           AL833787.8         23388-25477
FEATURES             Location/Qualifiers
     source          1..3344
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 94.84 cM"
     gene            1..3344
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /note="cleavage stimulation factor, 3' pre-RNA, subunit 1"
                     /db_xref="GeneID:67337"
                     /db_xref="MGI:MGI:1914587"
     exon            1..186
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            187..387
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            388..665
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            666..863
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            864..1254
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..3344
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1957..1962
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1976
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /note="major polyA site"
     regulatory      3319..3324
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3344
                     /gene="Cstf1"
                     /gene_synonym="1700057K18Rik"
ORIGIN      
        1 gcaggcgcac tgagctgtcg gagcccggaa gtggtgcacc aacggcccgt ccgatctgcg
       61 gccgttctat cgcccgccgt gctccccagg atcaggcgtt cgccagtcac acacagccct
      121 ttggattcaa ggcagtcgcg gaggtgatta gttcggagac ggtgaatgag cgtctcgaac
      181 gtgccacggt cagggaaact gtcatactct tctgcaaaat gtacagaacc aaagtgggtt
      241 tgaaggaccg gcagcagctc tacaagctga tcattagcca gctgctctac gacggttaca
      301 ttagtatcgc caatggcctc atcaatgaga tcaagcccca gtcggtgtgc gccccctcgg
      361 agcagctcct gcatctcatc aagctaggga tggagaacga tgacactgcg gtccagtatg
      421 ccattggtcg ctctgacacg gttgccccgg gcacagggat cgacctggag tttgatgcag
      481 acgttcaaac aatgtcacca gaggcttccg agtatgaaac ctgttatgtc acttcccaca
      541 aaggcccgtg ccgcgtggcc acctacagca gagacgggca gttgatagcc acaggatctg
      601 ctgatgcttc cataaagata ctggacacag aaagaatgtt ggccaaaagt gccatgccaa
      661 ttgaggtcat gatgaatgag actgcacaac agaacatgga gaaccaccca gtgatccgaa
      721 ctctttacga ccacgtggat gaagtcacgt gtcttgcttt tcacccaaca gaacagatcc
      781 tggcctcggg ctcaagggat tatactctga aattgttcga ttattccaaa ccgtctgcaa
      841 aaagagcttt caaatacatt caggaagccg aaatgttgcg ttccatctct ttccaccctt
      901 ctggagactt catcctggtg ggaactcagc atcccacgct tcgcctgtat gacatcaaca
      961 ccttccagtg ttttgtctcc tgcaatcccc aagaccagca caccgatgcc atctgctccg
     1021 ttaactataa tcctagtgcc aacatgtacg tcactggcag caaggacggc tgcatcaagc
     1081 tgtgggatgg cgtctccaac cgctgcatca caacctttga gaaggctcac gatggggcag
     1141 aagtctgctc tgccattttc tccaagaatt ccaagtacat cctctcaagt ggaaaagact
     1201 ctgtagcgaa actctgggag atttccacag ggcggacgct ggtgaggtac acaggcgcag
     1261 gtctgagcgg acggcaagtg caccggacac aggcagtgtt caaccacact gaggactata
     1321 ttttgctgcc ggacgaaagg accatcagcc tgtgctgctg ggactccagg acagctgagc
     1381 gcaggaacct gctgtccctg ggccacaaca acatcgtgcg ctgcatagtg cactccccca
     1441 ccaaccctgg cttcatgacg tgcagcgatg acttccgagc tcggttctgg taccggaggt
     1501 ccaccactga ctgaactggc cccatcctag ggttcttgtc tcaggactct gccctcctcc
     1561 ctgtgtcctc accggctgcg gaagtgagca gcttgcacca tctgtggcgg gggtgtggcc
     1621 gcctggctcc tgccttggat ctgtgtgtgg aagcttgttt tttgaccttg acgtagacgc
     1681 gtggtgggaa aagtcctatt acagtgattt ccatgtggtc tccaccagct tagtgagtgc
     1741 aggacttggc acagccttca gctctcattc ctggagaagg acggcgtgtg gcctcgggat
     1801 cacacttgtc acttcctgcg ttgtcctgcc ccctctgtat tttctttcca gatgcatttt
     1861 gacacatgag gagggctaca tctctgagga gccgggttcc atgtagaacc atcttgcagg
     1921 gatcccagtc ccatcctgag gtgacattgt cctggtaata aagctcagat ctacaacctc
     1981 actgttcctc cttcttcacg tcaaacggag gctttctagc ccccgccccc tcctgtcttc
     2041 cacccttctc ggtaccaaca gtgcagtgct tctgttagga atggtgacta gcctgcaagc
     2101 ccagtagagc aggaggatca ggagtctaag gccttagcta aacagcaagt tcgaggccag
     2161 cctgggctac atgagcccct ttctcacaaa acaaaacaaa acaaaacaaa acaaccaaat
     2221 aggtgccata gcccatacct taattccaac tcttgggagc cagaggcagg tggatctctg
     2281 tgagatccta gcctggtcca aacatgagtt ctagggcagc cagagctata gagtgaaacc
     2341 ttgtctcaaa aaaggaggtt aggatctgat ctgatcagtc cgagccccga gagcctgccg
     2401 cccccagctg gggtgtccca gccgaggcgc cccggggccc acgctcctgg gaggcgctgc
     2461 agcactccag ctgatacagt tttctctctc gaagcgcttg ggaagctggc agtgttcttc
     2521 tgtctgggtt aagtcacatg cagatgaccc tcttactaac acagtctgct ttctgtcgct
     2581 cctgaagaag aggccctcag gacctgggca gaagtatcta gaaacagtgt aaggccaccg
     2641 actaagcaat gacaggcccc aggaagtcac ttttgagttg tgagaacttt gacataaaag
     2701 atctgttccc tcctccccac tggggatccc tgggtttgtg gtgttgtcct aaagagccgt
     2761 ttctgtccgc aggaagtagt aacggacact ttgatcttgc gtgttctgtc cggtgtttga
     2821 ccctggccac ctgggggtga tacccatagg ttagggacaa ggacaaccag tgctgtctag
     2881 gcaagctttg ttcctctggc gtccctggtg ctttctggct gtggcacagc agacttgaca
     2941 cctgtgttgc cacccgcacg ccagcgagag gttccagggt gctgcggtca cttgggaatt
     3001 aaaataatgc agcctccggg cctgcctcgg tgccagtagt ttgagggctg acaggtgcag
     3061 gatgaagatg ctcttctgtt tccaaaacag ttcctcccca cccccaagcc ctcctccttg
     3121 tcctcttcct ccttcctttc aaaaaccaca ctagcgtttg agccgttgca cacgtccaga
     3181 atatcacaca ctcattctcg tcacagaaca cctcgctaat tgtaccacat aacaccctgg
     3241 catttgaatg aaaaatttat gtctggtcag gataacctac cccttctatg ttgttttttt
     3301 taaagatgtg atttctaaaa taaatttttt ttatataaca gtga
//
