LOCUS       NM_029960                658 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus cystatin domain containing 2 (Cstdc2), mRNA.
ACCESSION   NM_029960 XM_130534
VERSION     NM_029960.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Frygelius,J., Oscarson,M., Nordqvist,K., Wedell,A. and Tohonen,V.
  TITLE     The reproductive tissue specific cystatin subgroup of genes:
            expression during gonadal development in wildtype and testatin
            knockout animals
  JOURNAL   Sex Dev 1 (6), 363-372 (2007)
   PUBMED   18391548
REFERENCE   3  (bases 1 to 658)
  AUTHORS   Li,Y., Friel,P.J., McLean,D.J. and Griswold,M.D.
  TITLE     Cystatin E1 and E2, new members of male reproductive tract subgroup
            within cystatin type 2 family
  JOURNAL   Biol Reprod 69 (2), 489-500 (2003)
   PUBMED   12700194
  REMARK    GeneRIF: identification and characterization; investigated the
            tissue distribution and localization of the corresponding mRNA and
            examined its regulation in the epididymis by testosterone and/or
            17ss-estradiol
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK020314.1 and BB073321.1.
            
            On Apr 25, 2009 this sequence version replaced NM_029960.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB596028.1, AK020314.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164136
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-650               AK020314.1         2-651
            651-658             BB073321.1         216-223
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 73.58 cM"
     gene            1..658
                     /gene="Cstdc2"
                     /gene_synonym="9230104L09Rik; mCST E2"
                     /note="cystatin domain containing 2"
                     /db_xref="GeneID:77705"
                     /db_xref="MGI:MGI:1924955"
     exon            1..264
                     /gene="Cstdc2"
                     /gene_synonym="9230104L09Rik; mCST E2"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..456
                     /gene="Cstdc2"
                     /gene_synonym="9230104L09Rik; mCST E2"
                     /note="Cystatin 12; cystatin E2"
                     /codon_start=1
                     /product="cystatin E2 precursor"
                     /protein_id="NP_084236.1"
                     /db_xref="CCDS:CCDS16851.1"
                     /db_xref="GeneID:77705"
                     /db_xref="MGI:MGI:1924955"
                     /translation="MALPWTILLALSGIYVQGAQAWCSEEDTLELDKLVSEPDIVKFA
                     LSAFHKKSKDEYAYRVIHIMNFLKVQEEPPQTFFVKLRLTRTICMKFEKSLDTCPLPE
                     LQNILICSFSISSPGSKQFNLLKMTCSEGLL"
     exon            265..369
                     /gene="Cstdc2"
                     /gene_synonym="9230104L09Rik; mCST E2"
                     /inference="alignment:Splign:2.1.0"
     exon            370..658
                     /gene="Cstdc2"
                     /gene_synonym="9230104L09Rik; mCST E2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaagggcaa agacaggaga cagaacctgc atcatattgt cgccagcggg gaagatggct
       61 ctgccctgga caatattact ggctctctct ggtatctatg tccagggagc tcaggcatgg
      121 tgttcggaag aggatactct cgaactcgat aaactagtca gtgaacctga catagtgaag
      181 tttgctttga gtgcattcca caaaaagagc aaggatgaat atgcctacag ggtgatacac
      241 atcatgaatt tcttgaaagt acaggaagaa ccaccacaaa ctttcttcgt gaagctgagg
      301 ctgacaagaa ccatctgtat gaaatttgag aaaagcctag acacctgccc cttacctgaa
      361 ctgcaaaata tcctcatctg ttccttcagc atcagcagcc caggctcaaa acagttcaac
      421 ctgttgaaaa tgacttgttc tgaggggctt ctctgactgg gacccaccac aaggatctac
      481 ttacagcact gatccagtcc tgctccttgc tctgaggata ctgccattca taggaatcag
      541 caattacagg cttaagaagc tgtgcaagtg tctgcagttt catgtcctgg aattttagaa
      601 atgccccttt gtacagattc atcacataga attagatcat taaacaccag catgtaat
//
