LOCUS       NM_001384090             417 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus cystatin A family member 2 (Csta2), transcript variant
            1, mRNA.
ACCESSION   NM_001384090 XM_006522699
VERSION     NM_001384090.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT033776.8.
            
            On May 28, 2020 this sequence version replaced XM_006522699.3.
            
            Transcript Variant: Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BY392927.1, SRR7652917.174039.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-114               CT033776.8         32979-33092
            115-216             CT033776.8         35522-35623
            217-417             CT033776.8         37224-37424
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 25.44 cM"
     gene            1..417
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /note="cystatin A family member 2"
                     /db_xref="GeneID:76770"
                     /db_xref="MGI:MGI:1924020"
     exon            1..114
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..342
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /codon_start=1
                     /product="Cystatin-A-like"
                     /protein_id="NP_001371019.1"
                     /db_xref="GeneID:76770"
                     /db_xref="MGI:MGI:1924020"
                     /translation="MMPGGLSRARSATPEIQEIANKVKSLLEEKTNEKYEVFKAVEYK
                     SQVVAGQNYFIKMDVGGGCFLHIKVFTGISGENVLELSGYQTNKTRKDELSYF"
     exon            115..216
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            217..417
                     /gene="Csta2"
                     /gene_synonym="2010005H15Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatcatttct tctaagtgtc ctatcgagca aagaagcaac tcatcagaat gatgcctgga
       61 ggcttgtcac gggccagatc tgccacacca gaaatccagg agattgctaa taaggtcaag
      121 tcactgcttg aagagaaaac caatgagaaa tatgaagtgt tcaaagctgt tgagtataaa
      181 tctcaagtcg tcgctggaca aaattacttc attaagatgg atgttggtgg tggttgtttc
      241 ctccacataa aagtcttcac agggatttct ggagaaaatg tcttggaact tagtggttac
      301 cagactaaca aaaccaggaa agatgagctg tcctacttct aagcagcaaa ttctaaagtg
      361 tcctgactct tctccttgta aacagatttg gccatcaata aagaatcaat cttgaaa
//
