LOCUS       NM_173861               2778 bp    mRNA    linear   ROD 31-JUL-2024
DEFINITION  Mus musculus casein kinase 2, alpha prime interacting protein
            (Csnk2a2ip), transcript variant 1, mRNA.
ACCESSION   NM_173861 XM_001002590 XM_006522096
VERSION     NM_173861.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Bai,X., Silvius,D., Chan,E.D., Escalier,D. and Xu,S.X.
  TITLE     Identification and characterization of a novel testis-specific gene
            CKT2, which encodes a substrate for protein kinase CK2
  JOURNAL   Nucleic Acids Res 37 (8), 2699-2711 (2009)
   PUBMED   19273531
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154294.2 and AC166327.1.
            
            On or before Feb 20, 2019 this sequence version replaced
            XM_006522096.1, NM_173861.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.200931.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               AC154294.2         148123-148304       c
            183-287             AC154294.2         51295-51399         c
            288-2778            AC166327.1         184397-186887       c
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 36.99 cM"
     gene            1..2778
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /note="casein kinase 2, alpha prime interacting protein"
                     /db_xref="GeneID:224291"
                     /db_xref="MGI:MGI:2676295"
     exon            1..182
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /inference="alignment:Splign:2.1.0"
     exon            183..287
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /inference="alignment:Splign:2.1.0"
     exon            288..2778
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /inference="alignment:Splign:2.1.0"
     CDS             589..2751
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /note="CK2 target protein 2"
                     /codon_start=1
                     /product="casein kinase II subunit alpha'-interacting
                     protein"
                     /protein_id="NP_776286.2"
                     /db_xref="CCDS:CCDS37374.2"
                     /db_xref="GeneID:224291"
                     /db_xref="MGI:MGI:2676295"
                     /translation="MVPLGYNNKYFGYVQDCQQQATDNSPIHYYTGDKQNQSYSQSMC
                     KEQSQNTVTVSPASFNKKAQSTQGSYNRAMKSSSSLYSTCSTTPSKDSLLKNSSYPSW
                     KSLDSSLSHHKSETTSLTSFTSTSSLEPSKISSRSRLLLPKTQTSSSIDLCWKSPSLE
                     SNQRVSTSSSTSVQHHEAPSLNIIWTTPSLESNQSEHDSQLCKSKSQKDSSLDRLWSS
                     LLESSQKALSSPSFTNRLQRNSFPPTSSSLEFSRVARNSPLPDCSKPLKIPVSNSNNN
                     VFSLPLSPAKSRKSTPSPHSFLPSRRLSTCQPKPKIVARCDPSTRAINTAVCHPKVQN
                     TASLSDKQRPRQLPSIHPKPNPSGQRVSSPKPCIKNKIASVPCSRLPNKSSVERSVKT
                     EPENEISWALDYSHPCIIKGGSVPVDVVNKIINSISKSTIQKDLSRQILFRRMRGKPN
                     PRPGPRLSSTYSVCLECASAIKSQCNHLSGKRDPRCATLFVIPTPESSTDGKVDVKII
                     LILSLPEKPSSTCFQLPMKDSKSENNLEALDDNLDVLEKITQFFPASESDFIQGLKTK
                     RKCLAVSSESKDLSQEPQSIDWLLYVKNSNGIQLETQVQGPSSSSSSSCSSVSSSSSA
                     SSIGRPSPPTPWVDPTPVPVSGYVLAKVRSYHRLPPGTSWLEFIRGSSSDTIKLRQSP
                     PVKAKPVRSHNSKCLKKGKRETSALLRYFQTKFQNEKS"
     regulatory      2751..2756
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /note="hexamer: ATTAAA"
     polyA_site      2778
                     /gene="Csnk2a2ip"
                     /gene_synonym="Ckt2; Csnka2ip"
                     /note="major polyA site"
ORIGIN      
        1 acaccctcaa ctaccatcag ggagggtagg acaggaagac tcccttggca tcaagtacaa
       61 aagcaatggg gtagtgggga ccccagacac aagcatcacc atcagtgaac attaaaggaa
      121 gatcctgggg tcactcacag ctaaagggat gaaaagaacc attcagcagc tacaacgtgg
      181 tgaaagacag cacttgcctc ctactatcaa gaaatcaaac tccaacaaca aagcacatct
      241 cccagcagcc atctggaatt ggtcctcgct gtgctgtgag cttatttgaa ttattccttg
      301 aagagagaca gagagagaaa ccgcccccca ccctggaact cttggaaatt aaatagaaga
      361 cagagaaaag cttacatggt aacatcatac cattgcccct ccagtttcat ttacagctta
      421 attgtgacac attctacaac atttgccatt aacacaaaca taaccacata gaaattagga
      481 ctactagtgc ttaaagtgcc aattgtccat ggattctcgt tctaaagact gctactaaaa
      541 caccgtgtaa gccaactgct tctccaaaga tccctacttc agtggaagat ggtgccatta
      601 ggctataata ataaatactt tggttatgtt caagactgtc agcaacaagc tacagacaat
      661 tcgcctatac attattacac aggtgataaa caaaatcaat cttacagcca atccatgtgc
      721 aaagaacaat cccaaaatac agtcacagtg tcaccagcaa gctttaacaa gaaggcccag
      781 agcactcaag gctcctataa cagagctatg aaatcatcgt catcattata ttccacatgc
      841 tcaacgacac cttcaaaaga ctccctcttg aaaaattcat catatccctc ttggaaatcc
      901 ttggactcct ctttgtctca ccacaagtct gagacgacat ccttaactag ctttaccagt
      961 acttcatctt tggaacctag caaaataagt tcgagatcaa ggttactcct cccgaagacg
     1021 cagacatcat caagtattga cctttgctgg aaatcacctt cactggagtc taatcaaaga
     1081 gtctcaacat catcttcaac ttccgtgcaa catcacgaag caccttccct gaatatcatc
     1141 tggactacac cttccttgga atctaatcaa agcgaacatg actcacaatt atgtaaatct
     1201 aagtcacaga aggattcctc attagaccgc ctttggtcat ctttattaga atccagtcaa
     1261 aaagccctga gttcgccatc attcaccaac agacttcaaa gaaacagctt tcctccaact
     1321 tcatcttctc ttgaattcag tcgagtggct cgtaattcac cactacccga ctgtagcaag
     1381 cctctgaaaa ttcctgtatc aaactctaat aacaatgttt ttagtttacc attgtcccca
     1441 gcaaaatcga gaaaatcaac tccatcacca cattcttttc tgccatctcg gcgtttatca
     1501 acgtgccagc ctaaacctaa aatagtggct agatgtgatc ctagcacgcg ggccatcaac
     1561 acagctgttt gccaccccaa ggtccagaat actgcttcac tcagtgacaa acaaagacct
     1621 cgtcagctac catcaattca tcctaaacca aatccctcag gtcaaagagt atcaagtcct
     1681 aagccctgta tcaagaacaa aattgcttca gttccgtgtt ccagactgcc aaataaaagt
     1741 agcgttgaaa gaagtgtgaa gaccgagcca gagaatgaaa tctcgtgggc cttagattat
     1801 agtcatccct gcattattaa aggcggtagt gttcctgttg atgttgtcaa taaaattatc
     1861 aattccatct ccaagtctac aatccagaag gatctctcta ggcaaattct ctttcgaaga
     1921 atgagaggaa agccaaaccc tcgtcctggt ccccgccttt catcaacata ttctgtttgt
     1981 ttagagtgtg cttccgccat aaaatcccag tgtaaccatc tttcaggaaa gagagatcct
     2041 cgatgcgcaa ccctctttgt cataccaaca cccgagagca gcaccgatgg gaaagtagat
     2101 gtgaaaataa tccttatcct ttctctacca gagaagcctt cctcaacctg tttccaactt
     2161 cctatgaaag acagtaaatc tgaaaataat ttagaagccc tcgatgacaa tctggacgta
     2221 ttagagaaga ttacacagtt tttccctgca tccgaatctg attttatcca ggggctcaag
     2281 acaaagcgaa agtgtttggc tgtatcctcc gagagcaaag atttaagcca agagccccag
     2341 tctattgact ggctgctgta tgttaaaaat agtaatggta ttcagctcga aacccaggtt
     2401 caaggcccat cctcctcctc ttcttcctcc tgctcctctg tttcctcctc ctcctctgct
     2461 tcatctattg gccgtccctc tccacccact ccttgggtag atcccactcc ggttccggtt
     2521 tcaggatatg ttcttgcaaa ggtgagaagt tatcacaggt tacctccagg gacctcctgg
     2581 cttgagttca taaggggttc aagttctgac accatcaaac taagacaatc accaccagtc
     2641 aaagccaagc ctgtgaggtc tcacaactcg aaatgcttga aaaaggggaa aagggaaacc
     2701 agtgcgctgc tcagatattt ccaaacaaag tttcaaaatg agaaatcctg attaaatcaa
     2761 ctttctgtct ctttgaaa
//
