LOCUS       NM_001161854            4127 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus cold shock domain containing E1, RNA binding (Csde1),
            transcript variant 2, mRNA.
ACCESSION   NM_001161854
VERSION     NM_001161854.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4127)
  AUTHORS   Laddach,A., Chng,S.H., Lasrado,R., Progatzky,F., Shapiro,M.,
            Erickson,A., Sampedro Castaneda,M., Artemov,A.V.,
            Bon-Frauches,A.C., Amaniti,E.M., Kleinjung,J., Boeing,S.,
            Ultanir,S., Adameyko,I. and Pachnis,V.
  TITLE     A branching model of lineage differentiation underpinning the
            neurogenic potential of enteric glia
  JOURNAL   Nat Commun 14 (1), 5904 (2023)
   PUBMED   37737269
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4127)
  AUTHORS   Lv,J., Zhou,Y., Zhou,N., Wang,Z., Chen,J., Chen,H., Wang,D.,
            Zhou,L., Wei,K., Zhang,H., Tang,K., Ma,J., Liu,Y., Wan,Y.,
            Zhang,Y., Zhang,H. and Huang,B.
  TITLE     Epigenetic modification of CSDE1 locus dictates immune recognition
            of nascent tumorigenic cells
  JOURNAL   Sci Transl Med 15 (681), eabq6024 (2023)
   PUBMED   36724242
  REMARK    GeneRIF: Epigenetic modification of CSDE1 locus dictates immune
            recognition of nascent tumorigenic cells.
REFERENCE   3  (bases 1 to 4127)
  AUTHORS   MacPherson,M.J., Erickson,S.L., Kopp,D., Wen,P., Aghanoori,M.R.,
            Kedia,S., Burns,K.M.L., Vitobello,A., Tran Mau-Them,F., Thomas,Q.,
            Gold,N.B., Brucker,W., Amlie-Wolf,L., Gripp,K.W., Bodamer,O.,
            Faivre,L., Muona,M., Menzies,L., Baptista,J., Guegan,K., Male,A.,
            Wei,X.C., He,G., Long,Q., Innes,A.M. and Yang,G.
  TITLE     Nucleocytoplasmic transport of the RNA-binding protein CELF2
            regulates neural stem cell fates
  JOURNAL   Cell Rep 35 (10), 109226 (2021)
   PUBMED   34107259
REFERENCE   4  (bases 1 to 4127)
  AUTHORS   Kakumani,P.K., Harvey,L.M., Houle,F., Guitart,T., Gebauer,F. and
            Simard,M.J.
  TITLE     CSDE1 controls gene expression through the miRNA-mediated decay
            machinery
  JOURNAL   Life Sci Alliance 3 (4), e201900632 (2020)
   PUBMED   32161113
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4127)
  AUTHORS   Moore,K.S., Yagci,N., van Alphen,F., Meijer,A.B., 't Hoen,P.A.C.
            and von Lindern,M.
  TITLE     Strap associates with Csde1 and affects expression of select
            Csde1-bound transcripts
  JOURNAL   PLoS One 13 (8), e0201690 (2018)
   PUBMED   30138317
  REMARK    GeneRIF: Strap associates with Csde1 and affects expression of
            select Csde1-bound transcripts
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4127)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Aizawa,H., Yuasa,S.,
            Nakajima,D., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: II. The complete nucleotide sequences of 400 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (1), 35-48 (2003)
   PUBMED   12693553
REFERENCE   7  (bases 1 to 4127)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   8  (bases 1 to 4127)
  AUTHORS   Boussadia,O., Amiot,F., Cases,S., Triqueneaux,G.,
            Jacquemin-Sablon,H. and Dautry,F.
  TITLE     Transcription of unr (upstream of N-ras) down-modulates N-ras
            expression in vivo
  JOURNAL   FEBS Lett 420 (1), 20-24 (1997)
   PUBMED   9450542
REFERENCE   9  (bases 1 to 4127)
  AUTHORS   Lopez-Fernandez,L.A., Lopez-Alanon,D.M. and del Mazo,J.
  TITLE     Different developmental pattern of N-ras and unr gene expression in
            mouse gametogenic and somatic tissues
  JOURNAL   Biochim Biophys Acta 1263 (1), 10-16 (1995)
   PUBMED   7632727
REFERENCE   10 (bases 1 to 4127)
  AUTHORS   Jeffers,M., Paciucci,R. and Pellicer,A.
  TITLE     Characterization of unr; a gene closely linked to N-ras
  JOURNAL   Nucleic Acids Res 18 (16), 4891-4899 (1990)
   PUBMED   2204029
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163297.4, AK151970.1 and AA178550.1.
            
            On Jul 17, 2015 this sequence version replaced NM_001161854.1.
            
            Transcript Variant: This variant (2) lacks an alternate exon in the
            coding region compared to variant 1. The resulting protein (isoform
            2) is shorter and has the same N- and C-termini compared to isoform
            1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK151970.1, AK151723.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-61                AC163297.4         136909-136969
            62-4097             AK151970.1         2-4037
            4098-4127           AA178550.1         358-387
FEATURES             Location/Qualifiers
     source          1..4127
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 45.25 cM"
     gene            1..4127
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /note="cold shock domain containing E1, RNA binding"
                     /db_xref="GeneID:229663"
                     /db_xref="MGI:MGI:92356"
     exon            1..124
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            125..548
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            549..747
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            748..857
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            858..955
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1037
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1166
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1167..1292
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1505
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..1646
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1811
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1812..1919
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..2095
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            2096..2208
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            2209..2328
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            2329..2507
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            2508..2671
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            2672..2804
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     exon            2805..4105
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3705..3710
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /note="hexamer: AATAAA"
     polyA_site      3726
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
     regulatory      4076..4081
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /note="hexamer: AATAAA"
     polyA_site      4105
                     /gene="Csde1"
                     /gene_synonym="D3Jfr1; mKIAA0885; unr"
                     /note="major polyA site"
ORIGIN      
        1 tccccccacc ttcccgtgca cgcgctcgga gcctgcaact ctcgcgagag aagcgagatt
       61 tattcctacg taccgggccg tgctgcttat ggcggcgctg gagagggggc gctgagctgt
      121 tgggtatgaa gtgtaacaga acagacttta ccacctgaaa ctgctgcttc aagttcagat
      181 caggcaagga acagacccgc aacaaccaac aacaccaaag aagagtacac aagttgaaga
      241 cacaacactt gatctgaaac aagaagtttg tgcctactca acagctttga aagagcactt
      301 cccaacgctg ctagtagtct ttgttttctt cagtgctgta ctgtgagatt gcccggtgca
      361 gcagcagttg tattctttat tagcttggta gatcatttcc tctcgctctc cttttttttt
      421 tctttttttc tttttctttt ttttttcttt ttttaaatac tagcaacttt catcctttgg
      481 aacttgtgct gaaaaaagaa gagtcagcaa atactactga aagtgcaata tttgattatc
      541 actgcgagat gagctttgat ccaaaccttc tccacaacaa tggacacaat gggtacccca
      601 atggtacttc agcagcactt cgtgaaactg gggttattga aaaactcttg acctcttacg
      661 gattcattca gtgttcagaa cggcaagcta gacttttctt ccactgttca caatataatg
      721 gcaacctcca agacttaaaa gtaggagatg atgttgaatt tgaagtatca tctgaccgga
      781 ggactgggaa acctattgct attaaattgg tgaagataaa accagaaata catcctgaag
      841 aacgaatgaa cggacaagaa gtattttatc tgacttacac ctctgaagat gtggaaggga
      901 atgttcagct ggaaactgga gataaaatta actttgtaat tgataacaat aaacacactg
      961 gtgctgtaag tgctcgtaat attatgctgt tgaaaaagaa gcaggctcgc tgtcaaggag
     1021 tagtttgtgc catgaaggag gcgtttggct ttatcgaaag aggtgatgtt gtaaaagaga
     1081 tattctttca ctatagtgaa tttaaaggtg acctagaaac cctacagcct ggagatgacg
     1141 tggaattcac aatcaaggac agaaatggta aagaagttgc aacagatgtc agactattgc
     1201 ctcaaggaac agtcattttt gaagatatca gcattgaaca ttttgaagga actgtaacca
     1261 aagttatccc aaaagtaccc agtaaaaacc agaatgaccc attgccagga cgaatcaaag
     1321 ttgactttgt gattcctaaa gaacttccct ttggagacaa agacacaaaa tccaaagtga
     1381 ccctgctgga aggtgaccat gttaggttta atatttcaac agaccgacgt gacaaattgg
     1441 aacgagcaac caacatagag gttctatcaa atacatttca gttcactaat gaagccagag
     1501 agatgggtgt gattgctgcc atgagagatg gttttggttt catcaagtgt gtggatcgtg
     1561 atgctcgtat gttcttccac ttcagtgaga ttctagatgg gaaccagctc cacattgcag
     1621 atgaagtaga gtttactgtg gttcctgata tgctctctgc ccaaagaaat catgctatta
     1681 ggattaaaaa acttcccaag ggcacggttt cattccattc ccattcagat catcgttttc
     1741 tgggcaccgt agaaaaagaa gccacttttt ccaatcctaa aactacaagc ccaaataaag
     1801 gcaaagacaa ggaggcagaa gatggcatta tagcttatga cgactgtggg gtgaaactga
     1861 cgattgcttt tcaagccaag gatgtggaag gatctacttc tcctcaaata ggagataagg
     1921 ttgaatttag tattagtgac aaacagaggc ctggacagca gattgcaact tgcgtgagac
     1981 ttttaggtcg taattctaac tccaaacgtc tcttgggtta tgtggcaact ctgaaagata
     2041 attttggatt tatagaaaca gctaatcatg ataaggaaat atttttccac tatagtgagt
     2101 tctctggtga tgttgatagc ctggaactgg gagacatggt tgaatacagc ttgtccaaag
     2161 gcaaaggcaa taaagtcagt gctgagaaag taaacaaagc ccactcagtg aatggcatta
     2221 ctgaggaagc taatcccacc atctactctg gtaaagtcat tcgccctctg agaggtgttg
     2281 atccaacaca gattgagtac caaggaatga ttgagattgt ggaggagggg gatatgaaag
     2341 gtgaagtgta tccttttggc atagttggga tggccaacaa aggggattgc ctacagaaag
     2401 gggagagtgt caagttccag ttgtgtgtac ttggccaaaa tgcacaaact atggcctaca
     2461 acatcacacc ccttcgtagg gctactgtgg agtgtgtgaa agatcagttt ggctttatta
     2521 actatgaagt aggagatagc aagaagctct ttttccatgt gaaagaagtt caggatggcg
     2581 ttgagctaca ggcaggagat gaggtggaat tctcagtgat ccttaatcag cgcactggga
     2641 agtgcagtgc ctgtaatgtc tggcgagtct gtgaaggccc caaagctgtt gcagctcctc
     2701 gacctgaccg gttggtcaat cgcctaaaga acatcaccct ggatgatgcc agtgctccac
     2761 gtctaatggt tcttcgtcag ccaaggggac cagataactc aatgggattt ggtgcagaaa
     2821 gaaagatccg tcaagctggt gtcattgact aaccacgtcc acaaagcaca tcattaattc
     2881 actatggtcg agttgggggg attctggtga agggttctga atatctttct cttcatccct
     2941 cccaaaatct ggaatactta ttctattgag ctattacacc agttttaaca ccttcctcgt
     3001 gttatgttta aagaaaaaaa taaataaatt taagaaacca ttttaaaatt atgcacagtt
     3061 gcagcctgga aaacttaaag gtggcgcctt atagtgtcaa tttaggagct ttatttggtg
     3121 catttaacgc aactggtaat tgcaaattcc acttggcctg tgtaagtgaa caatgcagac
     3181 tgttactttg ttggccctat gaaattctgc actctagtca gtatatactc taccttcatg
     3241 acttaacact cagctgcatt cttttcctat tttttccctg ttcattatgc tttaattctg
     3301 aggaccatat gaaggtagaa tatattacct ttaaaaattg caaaaattta tatagcaaac
     3361 gatattctta agttgatggc caaatgttaa aatgttattt tcatatcatt tataatcttg
     3421 tcacaatcca cttaacgaag tttgattaca tttcagtgaa aattatcttc ccgagtagtt
     3481 tttttttttt tttcttcctg ggatgggggg ggtaaataac tttactacaa ttagtatgtg
     3541 tggtgcagaa tttcatgcaa atgaagtgtg ccagcagtgt gataatttaa acatatttaa
     3601 acaaaagacg aatgcacaaa attgctgctg cttagatcac tgcagcttct aggacccagt
     3661 ttcttttact gatttaaaaa caaaatgaac aaaaaaataa taataataaa aaagttgtgc
     3721 ctgaaatgaa tcctgttttt tttaataaat agccccgtgg ttccagtgcc ctgttcaata
     3781 caggcacttg atccttggtg tagcttctgt tcaactttgt atcacgggaa cggattggcc
     3841 tgatttctcg gccttcatct tgaattggcc ccaaacaggg tccctggcaa gtggagtgaa
     3901 ggctttttgt ctaacaatga caagggtcag ctcaggggtt gtcggggagg gcgctttcat
     3961 cttccccgtt gtcatttgag gttttgaact ctgggtaaag aggccgttta tctttgtaaa
     4021 cacaaaacat ttttgctttc tccggtttta tgttaatggc gaaagaatgg aagcgaataa
     4081 agttttactg atttttgaga cactaaaaaa aaaaaaaaaa aaaaaaa
//
