LOCUS       NM_145473               2507 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus cold shock domain containing C2, RNA binding (Csdc2),
            mRNA.
ACCESSION   NM_145473
VERSION     NM_145473.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Mayer,C., Hafemeister,C., Bandler,R.C., Machold,R., Batista
            Brito,R., Jaglin,X., Allaway,K., Butler,A., Fishell,G. and
            Satija,R.
  TITLE     Developmental diversification of cortical inhibitory interneurons
  JOURNAL   Nature 555 (7697), 457-462 (2018)
   PUBMED   29513653
REFERENCE   2  (bases 1 to 2507)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   3  (bases 1 to 2507)
  AUTHORS   Oeschger,F.M., Wang,W.Z., Lee,S., Garcia-Moreno,F., Goffinet,A.M.,
            Arbones,M.L., Rakic,S. and Molnar,Z.
  TITLE     Gene expression analysis of the embryonic subplate
  JOURNAL   Cereb Cortex 22 (6), 1343-1359 (2012)
   PUBMED   21862448
REFERENCE   4  (bases 1 to 2507)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 2507)
  AUTHORS   Muhlfriedel,S., Kirsch,F., Gruss,P., Chowdhury,K. and Stoykova,A.
  TITLE     Novel genes differentially expressed in cortical regions during
            late neurogenesis
  JOURNAL   Eur J Neurosci 26 (1), 33-50 (2007)
   PUBMED   17614941
REFERENCE   6  (bases 1 to 2507)
  AUTHORS   Castiglia,D., Scaturro,M., Nastasi,T., Cestelli,A. and Di Liegro,I.
  TITLE     PIPPin, a putative RNA-binding protein specifically expressed in
            the rat brain
  JOURNAL   Biochem Biophys Res Commun 218 (1), 390-394 (1996)
   PUBMED   8573167
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC102103.10, BB871178.1, AK132493.1, AK028916.1 and CO041050.1.
            
            On Nov 25, 2009 this sequence version replaced NM_145473.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132493.1, AK028916.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                AC102103.10        191807-191816
            11-103              BB871178.1         1-93
            104-1748            AK132493.1         2-1646
            1749-2477           AK028916.1         1614-2342
            2478-2507           CO041050.1         1-30                c
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 38.28 cM"
     gene            1..2507
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /note="cold shock domain containing C2, RNA binding"
                     /db_xref="GeneID:105859"
                     /db_xref="MGI:MGI:2146027"
     exon            1..229
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /inference="alignment:Splign:2.1.0"
     exon            230..531
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /inference="alignment:Splign:2.1.0"
     CDS             353..817
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /note="RNA-binding protein PIPPin"
                     /codon_start=1
                     /product="cold shock domain-containing protein C2"
                     /protein_id="NP_663448.2"
                     /db_xref="CCDS:CCDS27677.1"
                     /db_xref="GeneID:105859"
                     /db_xref="MGI:MGI:2146027"
                     /translation="MTSESTLPPVVPPLHSPKSPVWPTFPFHREGSRIWERGGGIAPR
                     DLPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDI
                     EGEYVPVEGDEVTYKICPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS"
     exon            532..654
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /inference="alignment:Splign:2.1.0"
     exon            655..2490
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2458..2463
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /note="hexamer: AATAAA"
     polyA_site      2490
                     /gene="Csdc2"
                     /gene_synonym="Pippin"
                     /note="major polyA site"
ORIGIN      
        1 agcacatcct gacgtcagca ggagggcgtg tgtgagtgag tgagtgagtg agtgaggggc
       61 ccgaggtgcc tcctgcacac cacacacaca cacacacaca cacacacaca cacacgccac
      121 ggagagtgca ttatccagac gtgacccctg cgagccagct ccacagtcca gagagatcgg
      181 gtgctgccca ctacaggaga cagtgcctgg acccagctgc cacggcgaga cggagtccat
      241 agctggcgag gccggtgagc agggcgaggc caggccctgc ccgaaaggac cccagagtcc
      301 ttcaccggcc cccgagctcc agagcccatc aggctctcct gctggctcca ccatgacatc
      361 agagtctaca ttaccgccag tggtgccacc cctccactcc cccaaatccc ccgtctggcc
      421 cacgttcccc ttccacaggg agggcagtag gatctgggaa cgtggtggtg gcattgctcc
      481 tcgggacctg cccagccctc tgcctaccaa gcggaccagg acatactcag cgacagctcg
      541 agcctcggcc ggccccgtgt tcaagggcgt ctgtaagcag ttctcccgct cccagggcca
      601 cggcttcatc acgcctgaga atggctccga ggacatcttc gtgcatgttt ctgacatcga
      661 gggggagtac gtgcctgtgg aaggagacga ggtgacctac aagatttgtc ccatcccccc
      721 caagaaccag aagtttcagg ctgtggaggt ggtgctcacc cagttggctc cccacacccc
      781 ccacgagaca tggtctggcc aggttgtggg atcctaggca ggtgggggta tccccacgag
      841 gaggcaggca gcagccagcc tgtgccccca ctgtgctgct gacccagccc ttgggtgtgc
      901 ttgtttgtcc gcctgtctgt ctgtgcttgt ggctgtgaat gtgtgcttcc acctgtgacc
      961 cgtgacttgt atgatccggc ctagggttgg acggagtgca gctaccaagg cgtgtttctc
     1021 cttcctccca actctgccac gtacacacac cttctcgccc tcttgcccac tatctataca
     1081 ctgagtctct gtgggtctgt gtcatgttct tgagaaccca gggggacccc tctcctgtga
     1141 gcctgttcct tactgctgtc tccggtaccc aggcctgtct gcttgtgttc ctgtctcctg
     1201 tgctggacct gggttatgta ccacagcctg ggcccttcct ctcacaagcc aggcctctga
     1261 gtactttgta ggggtctcct ttagggagga agagggcaaa acgtggaggt tcctggccaa
     1321 tccctgccat aacctgccca gttcatcttc ctgtccccgc ctgtttggtg ccctgagaac
     1381 atggctgcaa gcaggaggga actttagcac tcctgttatg taggccagtc ctctctcctc
     1441 agctgtcaga tgatctttga accccacgga gctgaggaag ccaagctcac tcactccctg
     1501 aggtgaggcg gggatagggt ttccctccag cttgctcttc tacccgggat gctcaaacct
     1561 cacgaatgct ctggcccatt gctggccatg acagcagctg aggatgcagc gatggactga
     1621 catgtcacct caggcaaggc caggtccagg cacccaaagg atcggtcctc agccagggag
     1681 accactggct ttgcccctcc caccccccat gagatcctct tcccagagct atgcaatggc
     1741 tctcataagc ccctgacagg tcagcagctg aggtggctct tatctctctt gtccccaagt
     1801 gtgactgtcc ctcttccctg gagtcccttt ggagctgtgt cccttctaga gagccagtta
     1861 cttaaccaga ggataagtga ggtcacaggc tcaggaaggg cctggcacaa tagtgacctt
     1921 tatgagaccc agcccagaag taaaatgtga gcacagatag ccagggtgaa ggggtcagtg
     1981 gttgcgaggt agccttgtag gcattccagg accacagggt agtcatttgg ggcatttgca
     2041 ccccaacttg tcctagtacc ctttgcacac ggcccagcag cctagagctg ctaacaagtg
     2101 ctggccagtc ctccatcctg ggaaggacct gtctgatacc ccactgtgag ctaggcttct
     2161 ccagcaaagc ctatccctgg agaccagtcc tcagcaacct tgaggaccag agttcaaatc
     2221 tccagcaagc ctgtaaccca gaactgtgtt aataaagaca caggcggatc ctttgacaag
     2281 gaaccccagg gccatcagcc ctctgttgtg agcaggtcct tagcagtcat caccttgagg
     2341 ctccccgaat gatagggaca acagacctcc tccctactct tgggccctgc agcgccaagt
     2401 cagaaacttc cccactcaga ccccagccac ggattcccca tccctcctga cactggcaat
     2461 aaactcaact gtgacccacc ctgcccctga aaaaaaaaaa aaaaaaa
//
