LOCUS       XM_011243349            3059 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cryptochrome circadian regulator 1 (Cry1),
            transcript variant X2, mRNA.
ACCESSION   XM_011243349
VERSION     XM_011243349.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 12, 2024 this sequence was replaced by
            NM_001428427.1.
            
            On Aug 8, 2019 this sequence version replaced XM_011243349.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3059
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..3059
                     /gene="Cry1"
                     /gene_synonym="Phll1"
                     /note="cryptochrome circadian regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 46 ESTs, 530 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 22 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12952"
                     /db_xref="MGI:MGI:1270841"
     CDS             1104..2447
                     /gene="Cry1"
                     /gene_synonym="Phll1"
                     /codon_start=1
                     /product="cryptochrome-1 isoform X2"
                     /protein_id="XP_011241651.1"
                     /db_xref="GeneID:12952"
                     /db_xref="MGI:MGI:1270841"
                     /translation="MEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEELGFDTD
                     GLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLRFGCLS
                     CRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPICVQIP
                     WDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEG
                     MKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIRRYLPV
                     LRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIYQQLSR
                     YRGLGLLASVPSNSNGNGGLMGYAPGENVPSCSSSGNGGLMGYAPGENVPSCSGGNCS
                     QGSGILHYAHGDSQQTHSLKQGRSSAGTGLSSGKRPSQEEDAQSVGPKVQRQSSN"
ORIGIN      
        1 ggagtcaccc gggcagcctc gggaccggtg accggcaggc gagcgtcccg cggcctggag
       61 ctctagcccg cgctctccga gctcgctgcc cactccggga cgcacaggcc gcgtcgcgcg
      121 gaggccgcgt gagctcgtgt ccgttcgtgg aggccgcctc gggcgcgcca ccgtctcctc
      181 gcgggtcgcc tcggttgggc gaggtttccg tgacgagcct cccggggctg ctgcgaccag
      241 ctcgggccgt cgtggcggct cgggccccgc gcgctcgctt gcgctccggg ggtctcaggc
      301 cctggaaggt atgcgtgtcc tccggacgct gggcgcgggc tcctgaagga cgtcgcgcgt
      361 ggatcccggc gcctcggcag cctccattca tctgccagct gcgcgctcgc cacctccgcg
      421 ccccgcctcg gcgtcgcctc ctcccgtccc ctctctgcag ccctttcccc actcctcggg
      481 tgaggaggtt ttcttggaag cgcaggtgtc ggttatgagc ccggcttccc tcccttgaag
      541 ctctcggtag aggaagtcgg ggtgacccgc cgcgccccga gcatgggggt gaacgccgtg
      601 cactggttcc gaaagggact ccggctccac gacaaccccg ccctgaagga gtgcatccag
      661 ggcgccgaca ccatccgctg cgtctatatc ctcgacccct ggttcgccgg ctcttccaac
      721 gtgggcatca acaggtggcg gggttcctgc tgtttttcta acttaattta aagtcttctt
      781 tctaattttt gcttcagtgt cttgaggatc ttgatgccaa tctacgaaaa ttaaattctc
      841 gtctgtttgt gattcgggga cagccagctg atgtatttcc caggcttttc aaggaatgga
      901 acatcactaa actctcaatt gagtatgatt ctgagccttt tgggaaggaa cgagatgcag
      961 ctatcaagaa gctggctact gaggctggcg tggaagtcat cgtgcgcatt tcacatacac
     1021 tgtatgacct ggacaagatc atagaactca atggcggaca gccacctcta acatataaaa
     1081 ggtttcagac tctcgtcagc aagatggagc cactggagat gccagcagac accatcacat
     1141 cagatgtgat aggaaagtgc atgacccctc tgtctgatga ccatgatgag aaatatggcg
     1201 ttccttccct ggaagagctc ggctttgata cagatggcct gtcctctgca gtgtggccag
     1261 gaggagaaac tgaggcactt acacgtttgg aaaggcattt ggaaagaaag gcctgggtgg
     1321 caaactttga acgacctcga atgaatgcaa actccctgct tgcaagccca actggactca
     1381 gtccttatct ccgctttggt tgtttatcat gtcggctgtt ttatttcaaa ctaacagatc
     1441 tctacaaaaa ggtaaagaag aatagttccc ctcccctttc tctttatggg caactcctgt
     1501 ggcgtgaatt tttttataca gcagccacaa acaacccacg ctttgacaaa atggaaggga
     1561 accccatctg tgttcagatc ccttgggaca agaaccccga ggctctggcc aaatgggcag
     1621 aaggccggac aggcttcccg tggattgacg ccatcatgac tcagcttcgt caggagggct
     1681 ggatccacca tttagccaga cacgcggttg cctgtttcct gactcgtggt gacctgtgga
     1741 tcagctggga agaagggatg aaggtctttg aagagttact gcttgatgca gattggagca
     1801 taaatgctgg aagttggatg tggctgtcct gcagttcctt ttttcagcaa ttttttcact
     1861 gctactgccc tgtgggtttt ggtaggagga cagatcccaa tggagactat attaggcgtt
     1921 atttacctgt cctaagaggc ttccctgcaa aatatatcta cgatccttgg aatgcaccag
     1981 aaggcatcca gaaggttgcc aagtgtttga taggagttaa ttaccccaaa ccgatggtga
     2041 accatgctga ggcaagcaga ctgaatattg aaagaatgaa gcagatctat cagcagcttt
     2101 cccggtacag agggctaggt cttctcgcct cggtcccttc taactctaat gggaatggag
     2161 ggctcatggg ctatgctcct ggagagaatg tcccgagttg tagcagcagc gggaatggag
     2221 ggctcatggg ctatgctcct ggagagaacg tcccgagctg tagcggtgga aattgctctc
     2281 aaggaagtgg tattttacac tatgctcacg gggacagtca gcagactcac tcactcaagc
     2341 aagggagaag ctccgcgggc accggcctca gcagtgggaa gcgtcctagt caggaagagg
     2401 atgcccagag tgtcggcccc aaagtccagc ggcagagcag taactgatac gaaagcgtgt
     2461 gggaggagtc ctcgcaactg aagttggtgg gaaagtcagt acttttcatt taaattattt
     2521 aaaaatgtca ttcattcatg gaaaacagtt acatttcaaa cattatttct aataatattt
     2581 ctgtggtttt taacttttta atgaatgtca tataggacaa gtggtaattt gtatataaga
     2641 tcttggtaag agatttgctt aatgtaaata taagccacag ttagaataga ctcatcagta
     2701 tatttttgat aatttttcat gtatggtaaa agttaaagtt aacagatatt ctgatataaa
     2761 tctcaagagt tttgagagtc attgcaggaa aatgggaagt ttttaaactt tcttaaaaga
     2821 ctttgttaaa attttagggc acatttttcc agacatcagt gtttgatcta attttgcagt
     2881 ctttgataat aatgctttag agaatacatg taatcaagtg cataggcctc tgtcagcgag
     2941 ggccatctgt gttacagcct cctgacttgc gcagtgcatt gtgccgagct cctttgtctc
     3001 tccgcctctt tatttacatc taccgtgact ttgttattaa agtatatgca aatatggaa
//
