LOCUS       XM_011243348            3192 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cryptochrome circadian regulator 1 (Cry1),
            transcript variant X1, mRNA.
ACCESSION   XM_011243348
VERSION     XM_011243348.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 12, 2024 this sequence was replaced by
            NM_001428425.1.
            
            On Aug 8, 2019 this sequence version replaced XM_011243348.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3192
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..3192
                     /gene="Cry1"
                     /gene_synonym="Phll1"
                     /note="cryptochrome circadian regulator 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 24 ESTs, 524 long SRA reads, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:12952"
                     /db_xref="MGI:MGI:1270841"
     CDS             874..2580
                     /gene="Cry1"
                     /gene_synonym="Phll1"
                     /codon_start=1
                     /product="cryptochrome-1 isoform X1"
                     /protein_id="XP_011241650.1"
                     /db_xref="GeneID:12952"
                     /db_xref="MGI:MGI:1270841"
                     /translation="MQLSKGRTFQGKVLRFLLQCLEDLDANLRKLNSRLFVIRGQPAD
                     VFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVIVRISHTLYDLDKIIE
                     LNGGQPPLTYKRFQTLVSKMEPLEMPADTITSDVIGKCMTPLSDDHDEKYGVPSLEEL
                     GFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFERPRMNANSLLASPTGLSPYLR
                     FGCLSCRLFYFKLTDLYKKVKKNSSPPLSLYGQLLWREFFYTAATNNPRFDKMEGNPI
                     CVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWI
                     SWEEGMKVFEELLLDADWSINAGSWMWLSCSSFFQQFFHCYCPVGFGRRTDPNGDYIR
                     RYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKPMVNHAEASRLNIERMKQIY
                     QQLSRYRGLGLLASVPSNSNGNGGLMGYAPGENVPSCSSSGNGGLMGYAPGENVPSCS
                     GGNCSQGSGILHYAHGDSQQTHSLKQGRSSAGTGLSSGKRPSQEEDAQSVGPKVQRQS
                     SN"
ORIGIN      
        1 tcgatgcgtt agtgtcagat ctgagatttg gttttagtcc agggaccgaa ttgcctacat
       61 cgttaaagaa ttgtagatgt ggtcaatatt aaatagtaca gacttagtag tagagattat
      121 tgacgaccct gaaacacttt agcttttacc ggtaagttat gtgtctgtgt tgatgggaac
      181 gccttccctg atttgcgaga aataactagg aggagaatta aacactccca gatcataatg
      241 gccttgatat cttaggcctc cgaaagggtt gtaatcttta atgttgacgt gtgtgtctag
      301 gtaactcata gtgtggagaa aaaccattca tttattatag cgggctccgg atccagcttt
      361 cttccccctt gaggttagag gaggaaaagc aagggaaaga attagctggt ttcccaactc
      421 tctctctcaa ctcctccttg tggttgacaa gacaaagcac agtttttctt tcgaggcaaa
      481 gtataatcct tctagggaat tgcgactgga agaaatcctc cggacatttt gtgagctgtg
      541 cctgggaaaa caggatagac gattgtgtgg cggaatgaaa cgaaagcatt agttcagcag
      601 ataatattga tagcttatgt gccagccgtg tctttggata tgagggatag agctgtgaac
      661 gagaagtctg ccctcttcag gcatatgtcc aagaaaaaaa tacgtatgta gtccttttgg
      721 agatgagacg tgttgcaaag aaaagacgag gtaaacagga atagggatgg ggacacaatt
      781 taaaacaatg ttaattagct ggggatgtag ctcactggaa gttaccacag ctaggatgtg
      841 tggagaaagt ggtcgccgat ttgaagacat gggatgcagc tgtctaaggg aagaacattc
      901 cagggaaagg tcctgagatt tttgcttcag tgtcttgagg atcttgatgc caatctacga
      961 aaattaaatt ctcgtctgtt tgtgattcgg ggacagccag ctgatgtatt tcccaggctt
     1021 ttcaaggaat ggaacatcac taaactctca attgagtatg attctgagcc ttttgggaag
     1081 gaacgagatg cagctatcaa gaagctggct actgaggctg gcgtggaagt catcgtgcgc
     1141 atttcacata cactgtatga cctggacaag atcatagaac tcaatggcgg acagccacct
     1201 ctaacatata aaaggtttca gactctcgtc agcaagatgg agccactgga gatgccagca
     1261 gacaccatca catcagatgt gataggaaag tgcatgaccc ctctgtctga tgaccatgat
     1321 gagaaatatg gcgttccttc cctggaagag ctcggctttg atacagatgg cctgtcctct
     1381 gcagtgtggc caggaggaga aactgaggca cttacacgtt tggaaaggca tttggaaaga
     1441 aaggcctggg tggcaaactt tgaacgacct cgaatgaatg caaactccct gcttgcaagc
     1501 ccaactggac tcagtcctta tctccgcttt ggttgtttat catgtcggct gttttatttc
     1561 aaactaacag atctctacaa aaaggtaaag aagaatagtt cccctcccct ttctctttat
     1621 gggcaactcc tgtggcgtga atttttttat acagcagcca caaacaaccc acgctttgac
     1681 aaaatggaag ggaaccccat ctgtgttcag atcccttggg acaagaaccc cgaggctctg
     1741 gccaaatggg cagaaggccg gacaggcttc ccgtggattg acgccatcat gactcagctt
     1801 cgtcaggagg gctggatcca ccatttagcc agacacgcgg ttgcctgttt cctgactcgt
     1861 ggtgacctgt ggatcagctg ggaagaaggg atgaaggtct ttgaagagtt actgcttgat
     1921 gcagattgga gcataaatgc tggaagttgg atgtggctgt cctgcagttc cttttttcag
     1981 caattttttc actgctactg ccctgtgggt tttggtagga ggacagatcc caatggagac
     2041 tatattaggc gttatttacc tgtcctaaga ggcttccctg caaaatatat ctacgatcct
     2101 tggaatgcac cagaaggcat ccagaaggtt gccaagtgtt tgataggagt taattacccc
     2161 aaaccgatgg tgaaccatgc tgaggcaagc agactgaata ttgaaagaat gaagcagatc
     2221 tatcagcagc tttcccggta cagagggcta ggtcttctcg cctcggtccc ttctaactct
     2281 aatgggaatg gagggctcat gggctatgct cctggagaga atgtcccgag ttgtagcagc
     2341 agcgggaatg gagggctcat gggctatgct cctggagaga acgtcccgag ctgtagcggt
     2401 ggaaattgct ctcaaggaag tggtatttta cactatgctc acggggacag tcagcagact
     2461 cactcactca agcaagggag aagctccgcg ggcaccggcc tcagcagtgg gaagcgtcct
     2521 agtcaggaag aggatgccca gagtgtcggc cccaaagtcc agcggcagag cagtaactga
     2581 tacgaaagcg tgtgggagga gtcctcgcaa ctgaagttgg tgggaaagtc agtacttttc
     2641 atttaaatta tttaaaaatg tcattcattc atggaaaaca gttacatttc aaacattatt
     2701 tctaataata tttctgtggt ttttaacttt ttaatgaatg tcatatagga caagtggtaa
     2761 tttgtatata agatcttggt aagagatttg cttaatgtaa atataagcca cagttagaat
     2821 agactcatca gtatattttt gataattttt catgtatggt aaaagttaaa gttaacagat
     2881 attctgatat aaatctcaag agttttgaga gtcattgcag gaaaatggga agtttttaaa
     2941 ctttcttaaa agactttgtt aaaattttag ggcacatttt tccagacatc agtgtttgat
     3001 ctaattttgc agtctttgat aataatgctt tagagaatac atgtaatcaa gtgcataggc
     3061 ctctgtcagc gagggccatc tgtgttacag cctcctgact tgcgcagtgc attgtgccga
     3121 gctcctttgt ctctccgcct ctttatttac atctaccgtg actttgttat taaagtatat
     3181 gcaaatatgg aa
//
