LOCUS       NM_053250               1014 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus cysteine-rich protein 3 (Crip3), transcript variant
            TLP-B, mRNA.
ACCESSION   NM_053250
VERSION     NM_053250.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1014)
  AUTHORS   Chung,Y.C., Tsai,Y.J., Shiu,T.Y., Sun,Y.Y., Wang,P.F. and Chen,C.L.
  TITLE     Screening large numbers of expression patterns of transcription
            factors in late stages of the mouse thymus
  JOURNAL   Gene Expr Patterns 11 (1-2), 84-92 (2011)
   PUBMED   20932939
REFERENCE   4  (bases 1 to 1014)
  AUTHORS   Casrouge,A., Veitia,R., Kirchner,J., Bevan,M.J. and
            Kanellopoulos,J.
  TITLE     The human and mouse orthologous LIM-only proteins respectively
            encoded in chromosome 6 and 17 show a different expression pattern
  JOURNAL   Microbes Infect 6 (12), 1063-1072 (2004)
   PUBMED   15380775
REFERENCE   5  (bases 1 to 1014)
  AUTHORS   Yu,T.S., Moctezuma-Anaya,M., Kubo,A., Keller,G. and Robertson,S.
  TITLE     The heart LIM protein gene (Hlp), expressed in the developing and
            adult heart, defines a new tissue-specific LIM-only protein family
  JOURNAL   Mech Dev 116 (1-2), 187-192 (2002)
   PUBMED   12128222
REFERENCE   6  (bases 1 to 1014)
  AUTHORS   Kirchner,J., Forbush,K.A. and Bevan,M.J.
  TITLE     Identification and characterization of thymus LIM protein: targeted
            disruption reduces thymus cellularity
  JOURNAL   Mol Cell Biol 21 (24), 8592-8604 (2001)
   PUBMED   11713292
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151275.3.
            
            On Mar 21, 2007 this sequence version replaced NM_053250.1.
            
            Transcript Variant: This variant (TLP-B) encodes the longer isoform
            (TLP-B).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF367971.1, AK080272.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-52                AC151275.3         81913-81964         c
            53-147              AC151275.3         81493-81587         c
            148-205             AC151275.3         81040-81097         c
            206-337             AC151275.3         80814-80945         c
            338-409             AC151275.3         80053-80124         c
            410-504             AC151275.3         79823-79917         c
            505-621             AC151275.3         79614-79730         c
            622-1014            AC151275.3         79135-79527         c
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..1014
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /note="cysteine-rich protein 3"
                     /db_xref="GeneID:114570"
                     /db_xref="MGI:MGI:2152434"
     exon            1..52
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            53..147
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            148..205
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            206..337
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            338..409
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            410..504
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            505..621
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     exon            622..1014
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /inference="alignment:Splign:2.1.0"
     regulatory      992..997
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /note="hexamer: AATAAA"
     polyA_site      1014
                     /gene="Crip3"
                     /gene_synonym="Tlmp; TLP; TLP-A; TLP-B"
                     /note="major polyA site"
ORIGIN      
        1 tgaagaacca tgagctggac ttgtccgcgt tgtcagcaac ccgtttactt tgctgagaag
       61 gtgagctcct taggcaagaa ctggcaccgt ttctgcctga aatgtgagcg ctgtcacagc
      121 atcttgtccc ctggcgggca tgcagagcac aacgggagac catactgcca caagccttgc
      181 tatggggctc tctttggacc tagaggggtc aacattggtg gtgtgggctg ctatctctac
      241 aacctcccaa ctccccctcc tgccagccgc atttccctca gccccagcaa ctttagcccc
      301 cccaggccaa ggactggcct ctcccgggcc aagaaaaggc ctccctactt gaagacattc
      361 actggtgaga cttcactgtg ccctggatgt ggggatcctg tcttttttgc tgagaaagtg
      421 atgtctttgg gcagaaattg gcaccgaccc tgcctgaggt gccaacgttg caggaagacc
      481 ctgactgctg ggagtcatgc ggagcatgat ggcatgcctt actgccacat cccctgctat
      541 ggatacctgt ttggccccaa aggtgggcaa tctgacccca gacactggac ctatgagaat
      601 gtgtggacaa cctcccttgt ggtgtgaaca ttggcgatgt gggctgctac atctatgacc
      661 cagtggacat aagatccaaa tgagccattc gcaggagtga ttaacctaac tcaggcttcc
      721 caccatctcc tccgaggtct tttggaatct ctggaattct ctagtccttt ggggaggaag
      781 aaggtgacac cctgggggcc tgggcctagg ctctgtggta gatctgagtc cagactgtct
      841 ctgccagttc tgtttcccca ttcctatctg gataccccag ccacccccac acacttagaa
      901 tggtggttgc ctgggttccc agttcctcct tccagcactg catgagcttc aaagtgtatt
      961 cgtcaaggtc actgcgttcc ctgacttctc taataaaatg ttgactgatt ccca
//
