LOCUS       NM_001033471            1596 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus CPX chromosome region, candidate 1 (Cpxcr1), mRNA.
ACCESSION   NM_001033471 XM_356353 XM_910235
VERSION     NM_001033471.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1596)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK133001.1, BX005471.10 and AV270501.2.
            
            On Oct 31, 2007 this sequence version replaced NM_001033471.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133001.1, BB615712.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-638               AK133001.1         3-640
            639-640             BX005471.10        114647-114648
            641-1240            AK133001.1         643-1242
            1241-1281           AV270501.2         260-300
            1282-1596           AK133001.1         1284-1598
FEATURES             Location/Qualifiers
     source          1..1596
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 49.48 cM"
     gene            1..1596
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /note="CPX chromosome region, candidate 1"
                     /db_xref="GeneID:382239"
                     /db_xref="MGI:MGI:2685989"
     exon            1..93
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /inference="alignment:Splign:2.1.0"
     exon            94..198
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /inference="alignment:Splign:2.1.0"
     exon            199..1596
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..1175
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /codon_start=1
                     /product="CPX chromosomal region candidate gene 1 protein
                     homolog"
                     /protein_id="NP_001028643.2"
                     /db_xref="CCDS:CCDS30367.1"
                     /db_xref="GeneID:382239"
                     /db_xref="MGI:MGI:2685989"
                     /translation="MTSSNQGNDPSENTLKNAENETPNACEDEKEHPLPDTNISQVET
                     NLSGMEPSSISSQEDMDFQTVQNSQPEAEMTQNDPPDEELIEDSLPLQIPIPKKLTIP
                     RLILCRIIYLSIPQPQPQLHEKKTLSDKMMFHLGEVEMTENDCFHTPILDKMIHPCFL
                     RWRVPFFTTNEISRMIIHLLCSRNFSQAECHQHNASVKQKYVAILDHQNIMNLQRNIV
                     FGRPLRVYYYHPLFERLTQRKASKLYQHKNGNHLFVRPRFYMPQLQTQNTVQKNVFKH
                     SWRAHHKLRLVIITDNNNWKYLCPICGCGFNNFYDFKHHSCSFSGN"
     regulatory      1571..1576
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /note="hexamer: AATAAA"
     polyA_site      1592
                     /gene="Cpxcr1"
                     /gene_synonym="Gm1143"
                     /note="major polyA site"
ORIGIN      
        1 agtgtaaagg gatgaatatc aggagagcag accaggactc ctgaagtcca tcttgtagaa
       61 aaagactctt aacaatcaga atggagagaa agggttctac taaacaagat ctatagaaaa
      121 ccaaggaagt gaagttcttt cccagttgcc ggagctcatc ctcattaaaa catataaagt
      181 cattctgtta tcaaactgca tctagaatga cttcttctaa tcaaggaaat gatccatctg
      241 aaaatactct caaaaatgca gaaaacgaaa caccaaatgc ctgtgaggat gagaaagaac
      301 acccacttcc tgataccaac atttctcagg tggaaactaa tctatccggc atggagccaa
      361 gctcaataag ttctcaggag gatatggatt tccagacagt acaaaacagc caacctgaag
      421 cagagatgac tcaaaatgat cccccagatg aagaattaat agaagactct cttccacttc
      481 agatacccat tcctaaaaag ttgaccattc caaggttaat attatgtaga attatctatc
      541 tgagtatacc acaaccacaa ccacaactcc atgaaaagaa gaccttatct gataaaatga
      601 tgttccatct aggggaagtg gagatgacag aaaatgattg cttccacacc cccatacttg
      661 acaagatgat ccatccctgt tttcttaggt ggcgagtccc attctttact actaatgaga
      721 taagtaggat gattattcac ctgctgtgca gcagaaattt ctctcaggca gaatgtcacc
      781 aacataatgc atctgtaaaa caaaaatatg tagccatcct tgatcaccaa aatatcatga
      841 atctccaaag gaacatagtc tttggaaggc ctttgagagt atactactat catccactct
      901 ttgaaagact gactcaaaga aaagcttcta agttatatca acacaagaat ggaaaccatc
      961 tttttgtgag gccaagattc tacatgccac agctccaaac ccagaatact gtccagaaaa
     1021 atgtttttaa acattcttgg agagctcatc ataagctgag gctagtaatc ataacagaca
     1081 acaataactg gaaatatctg tgtcccattt gtggttgtgg tttcaacaac ttttatgatt
     1141 ttaaacatca ttcttgcagc ttttctggca attaagttaa agcagtgtaa aggtttataa
     1201 tttgaaattc taaaactata caatagcaat aactcatctg aaacaatatc tcatgatcag
     1261 taaatttagt atgataacat tacactgcaa aatttaatac aaaaaatatg tacttcaata
     1321 agaaacattt tcaggaagag atttaagcat catatagatc attgaaatat caaggtattt
     1381 atctgtattg tgtcatcaac tgaaccaaga tgatgtttgc aactccctta acatcaattt
     1441 ctgctgagta ttgtttctgg acacaaatta aaacagatcc tgataaagaa aacagagagc
     1501 tagagaaagg tacaataggg gtttctagag actctgctca acaaaaaatc tgaagtttcc
     1561 tccaaattta aataaaatca tactaaatgt tactgt
//
