LOCUS       NM_172302               3582 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus cleavage and polyadenylation specific factor 7
            (Cpsf7), transcript variant 1, mRNA.
ACCESSION   NM_172302
VERSION     NM_172302.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3582)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3582)
  AUTHORS   Li,N., Cai,Y., Zou,M., Zhou,J., Zhang,L., Zhou,L., Xiang,W., Cui,Y.
            and Li,H.
  TITLE     CFIm-mediated alternative polyadenylation safeguards the
            development of mammalian pre-implantation embryos
  JOURNAL   Stem Cell Reports 18 (1), 81-96 (2023)
   PUBMED   36563685
REFERENCE   3  (bases 1 to 3582)
  AUTHORS   Corbo,J.C. and Cepko,C.L.
  TITLE     A hybrid photoreceptor expressing both rod and cone genes in a
            mouse model of enhanced S-cone syndrome
  JOURNAL   PLoS Genet 1 (2), e11 (2005)
   PUBMED   16110338
  REMARK    Erratum:[PLoS Genet. 2008 Jan;4(1):e18]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125093.4.
            
            On Jan 13, 2022 this sequence version replaced NM_172302.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK088603.1, SRR9219380.2915.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                AC125093.4         86493-86554         c
            63-171              AC125093.4         85760-85868         c
            172-390             AC125093.4         79821-80039         c
            391-494             AC125093.4         78897-79000         c
            495-667             AC125093.4         78355-78527         c
            668-1082            AC125093.4         76302-76716         c
            1083-1201           AC125093.4         74903-75021         c
            1202-1370           AC125093.4         72032-72200         c
            1371-1538           AC125093.4         70972-71139         c
            1539-3582           AC125093.4         64085-66128         c
FEATURES             Location/Qualifiers
     source          1..3582
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 6.6 cM"
     gene            1..3582
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /note="cleavage and polyadenylation specific factor 7"
                     /db_xref="GeneID:269061"
                     /db_xref="MGI:MGI:1917826"
     exon            1..62
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            63..171
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            172..390
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            391..494
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            495..667
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            668..1082
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1201
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1202..1370
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1538
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1539..3582
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3480..3485
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3509
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /note="major polyA site"
     regulatory      3555..3560
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3582
                     /gene="Cpsf7"
                     /gene_synonym="5730453I16Rik; C330017N18Rik"
ORIGIN      
        1 ggagagcggt tcgcgcgctt cgggcctagt cgggactctc cgcggccgcc gccatattcc
       61 cgtggcatct ttcttacttt gtcggttctc cgggctcgag agcgtatttc cggagccatg
      121 tcagaaggag tggatttgat tgatatatac gctgatgaag agttcaatca ggactcggag
      181 ttcaacaata cagatcagat tgacctatat gatgatgtgt tgacggctgc ctcacagccc
      241 tcagatgaca gaagcagtag cacggaacca ccccctcctg ttcgccagga gccagctccc
      301 aaaccaaaca acaagacccc tgcaattctg tatacataca gtggcctgcg gagtcggcga
      361 gcagctgtct atgtaggcag cttctcctgg tggaccacag accagcagct gatccaggtt
      421 atccgctcta taggagtcta tgatgtggtg gagttgaaat ttgcagagaa tcgtgcaaat
      481 ggccagtcta aaggatatgc tgaggtggtg gtagcctctg aaaattctgt ccacaaactg
      541 ctggaactct taccaggaaa agttcttaat ggagaaaaag tagatgtgag gccggccacc
      601 cggcagaact tgtcacagtt tgaggctcag gctcggaaac gtgagtgcgt ccgagtccca
      661 agagggggaa tacctccacg ggcccactcc cgagactcta gtgattctgc tgatggacgg
      721 gcaaccccct ctgagaatct tgtaccctca tctgctcgtg tggataagcc ccccagcgtg
      781 ttgccctact ttaaccgtcc tccttcagcc cttcccctaa tgggtctgcc cccaccccca
      841 attccacccc caccacctct ctcctcaagc tttggtgtcc ctcctcctcc tcctggtatc
      901 cactaccagc atctcatgcc ccctcctcct cgattacctc ctcatctggc tgtacctccc
      961 ccgggggcca tcccaccagc ccttcacctc aacccagcct tcttcccccc accaaatgct
     1021 acagtggggc ctccaccaga tacttacatg aaggcctcta caccctataa ccaccatggc
     1081 agccgagatt caggccctcc accttctaca gtgagtgaag ctgaatttga agagataatg
     1141 aagcgaaaca gagcaatttc cagcagtgcc atttccaaag cagtgtctgg agctagtgca
     1201 ggggattaca gtgacgccat tgagacacta ctcacagcca ttgcagttat caaacagtcc
     1261 cgagtcgcca atgatgagcg ttgccgggtc ctcatctcct ctcttaagga ctgtcttcat
     1321 ggcatagagg ccaagtcata cagtgtgggt gccagtggga gctcttctag gaaaagacat
     1381 cggtccaggg agaggtcacc cagccggtcc cgggagagta gcaggaggca ccgagacttg
     1441 cttcataacg aagaccggca tgatgattat ttccaagaga ggaaccggga acatgagaga
     1501 caccgggata gagaacggga ccggcaccac tgagaaagga gtctgggtgg aagcaaattg
     1561 tttttaatgg acttgcatct cctcaccttg atcaggacta aaggacggag gccactccac
     1621 cccttcccct tcttccaaat ccctaacttc ctccaggcaa aaccctctgc cctgcaggat
     1681 tgaagatggc ttggcagccc tcccagtccc acacctcctg tttgccaggg gggaagaacc
     1741 taaagacttg ctggggtagg aaatgagggc agacaggaag agagcaacat gtccagccca
     1801 tagactccac agagaatggt gctttgtcca aggaaacctg agtttctgat tgcccaggag
     1861 cagtcagtag tgaggatact gagaaaactt ccttcccaga gaaaatggat cctctatgtg
     1921 ggattgtagg aaagtgactg ggtgtgccaa aaatgcccag ggttctgccc tcaatactat
     1981 atttgatggg gccaagaggg tccaaaccct gctaacatac cactttattc aactccttta
     2041 ctttcctagc cggttgagga gggaccatga gaacagaaat taccttgtga caagacaagt
     2101 gttctcagtt ttctcctcac atattgacgg tttatttccc tggcctccta gaaggctgaa
     2161 tccttttgac tccttgctgt ctgactcctc agtggacttg ttcctccaaa gcagaacccg
     2221 ggaggttgct atctgccaga agcctaggcc agccagatac caccatttgc tgcttcaggc
     2281 ttgcctgcct gttgtgataa ccagctctta ggtatttcct ttccctgagg ctttccattt
     2341 aacatggaat ccttctcccc aagaaggctt cttccttgtt ttagaggaag gtactgcctt
     2401 tttggactta gggatgtcat gggacctcag taacgaggac ccctaattta taaagtacca
     2461 gaaatgtggg gaagaaagca atttgagcag tatgtagcct actcacatgg gctctttttc
     2521 aggtttgatg taagcatagg cttgcatatt cccaaggtac atactttgac ttaaatgtgg
     2581 gataactcag cactaatggg caggtaaagt cacaactgtg gttattttgg ttttgttttg
     2641 gtttttggtt tttttatcct tttactccaa tactccccct gtcactttgc ctggaggtgc
     2701 ttcaagcctt taacaaggag cagagaagaa ttggagccag actttagtga actcagctca
     2761 gagttgtaag gaccagcaca ctggtggcca ttttctgcac aagcaaatgg aattgctttt
     2821 tttcagcatc ccaattgtta taggttgctc ctgatagagg tagccacagt cctggagtac
     2881 catagggtga tgttccttct gcatgcatct gcagggcctg tgagatctgg tgtaaaaaga
     2941 gacatgacat gtggagatgg gacttagtgt gtgaggcata gggtcattgg agattcttca
     3001 gactcggggg agactgaatt ggatgcctct ctcatcccag cacacttcta atagacccct
     3061 tcagtcacgg agggagtgcc ccaaggttgg acaggcacat tccccttgga cagagactgc
     3121 aagttgtggc ttattttcct gttccctaaa ccgatcccta ttccatcaac atggcaccct
     3181 gcctcattgg ctaagtgtta agtgatgggc ttattcttga aagcagcttg gggtgtcttt
     3241 ttaaaatgta gaaaaaaatg taaagtgaca gttaaggaaa aacaacatat taaaatatca
     3301 gaaaaactgt ttacccagag aattattttc tccccacttt tatttttact cagtgacata
     3361 atttttagtt ttattcctca tagcaaaagg aaaaaaaaaa tcccaatcct caaaaggtca
     3421 aggccccgtc ccctgttgtc ggtgatttgt ttgtctttct gataggttga aaattgtgta
     3481 ataaacttga tgacgatgtc aatcttttat actgcattgt atttttttcc ttttgtaaca
     3541 aaatattttt aaataataaa tggggtgtga gctgtttacg ga
//
