LOCUS       XM_011238500            5455 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus carbamoyl-phosphate synthetase 1 (Cps1),
            transcript variant X2, mRNA.
ACCESSION   XM_011238500
VERSION     XM_011238500.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5455
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..5455
                     /gene="Cps1"
                     /gene_synonym="4732433M03Rik; CPS; D1Ucla3"
                     /note="carbamoyl-phosphate synthetase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 23 ESTs, 371 long SRA reads, 15 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:227231"
                     /db_xref="MGI:MGI:891996"
     CDS             36..4538
                     /gene="Cps1"
                     /gene_synonym="4732433M03Rik; CPS; D1Ucla3"
                     /codon_start=1
                     /product="carbamoyl-phosphate synthase [ammonia],
                     mitochondrial isoform X1"
                     /protein_id="XP_011236802.1"
                     /db_xref="GeneID:227231"
                     /db_xref="MGI:MGI:891996"
                     /translation="MTRILTACKVVKTLKSGFGFANVTTKRQWDFSRPGIRLLSVKAK
                     TAHIVLEDGTKMKGYSFGHPSSVAGEVVFNTGLGGYPEALTDPAYKGQILTMANPIIG
                     NGGAPDTTARDELGLNKYMESDGIKVAGLLVLNYSNDYNHWLATKSLGQWLQEEKVPA
                     IYGVDTRMLTKIIRDKGTMLGKIEFEGQSVDFVDPNKQNLIAEVSTKDVKVFGKGNPT
                     KVVAVDCGIKNNVIRLLVKRGAEVHLVPWNHDFTQMEYDGLLIAGGPGNPALAQPLIQ
                     NVKKILESDRKEPLFGISTGNIITGLAAGAKSYKMSMANRGQNQPVLNITNRQAFITA
                     QNHGYALDNTLPAGWKPLFVNVNDQTNEGIMHESKPFFAVQFHPEVSPGPTDTEYLFD
                     SFFSLIKKGKGTTITSVLPKPALVASRVEVSKVLILGSGGLSIGQAGEFDYSGSQAVK
                     AMKEENVKTVLMNPNIASVQTNEVGLKQADAVYFLPITPQFVTEVIKAERPDGLILGM
                     GGQTALNCGVELFKRGVLKEYGVKVLGTSVESIMATEDRQLFSDKLNEINEKIAPSFA
                     VESMEDALKAADTIGYPVMIRSAYALGGLGSGICPNKETLIDLGTKAFAMTNQILVER
                     SVTGWKEIEYEVVRDADDNCVTVCNMENVDAMGVHTGDSVVVAPAQTLSNAEFQMLRR
                     TSVNVVRHLGIVGECNIQFALHPTSMEYCIIEVNARLSRSSALASKATGYPLAFIAAK
                     IALGIPLPEIKNVVSGKTSACFEPSLDYMVTKIPRWDLDRFHGTSSRIGSSMKSVGEV
                     MAIGRTFEESFQKALRMCHPSVDGFTPRLPMNKEWPANLDLKKELSEPSSTRIYAIAK
                     ALENNMSLDEIVRLTSIDKWFLYKMRDILNMDKTLKGLNSDSVTEETLRKAKEIGFSD
                     KQISKCLGLTEAQTRELRLKKNIHPWVKQIDTLAAEYPSVTNYLYVTYNGQEHDIKFD
                     EHGIMVLGCGPYHIGSSVEFDWCAVSSIRTLRQLGKKTVVVNCNPETVSTDFDECDKL
                     YFEELSLERILDIYHQEACNGCIISVGGQIPNNLAVPLYKNGVKIMGTSPLQIDRAED
                     RSIFSAVLDELKVAQAPWKAVNTLNEALEFANSVGYPCLLRPSYVLSGSAMNVVFSED
                     EMKRFLEEATRVSQEHPVVLTKFVEGAREVEMDAVGKEGRVISHAISEHVEDAGVHSG
                     DATLMLPTQTISQGAIEKVKDATRKIAKAFAISGPFNVQFLVKGNDVLVIECNLRASR
                     SFPFVSKTLGVDFIDVATKVMIGESIDEKRLPTLEQPIIPSDYVAIKAPMFSWPRLRD
                     ADPILRCEMASTGEVACFGEGIHTAFLKAMLSTGFKIPQKGILIGIQQSFRPRFLGVA
                     EQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVI
                     NLPNNNTKFVHDNYVIRRTAVDSGIALLTNFQVTKLFAEAVQKSRTVDSKSLFHYRQY
                     SAGKAA"
ORIGIN      
        1 agatctggag atacacatca caaaacatct tcaaaatgac gaggattttg acagcttgca
       61 aagtggtgaa gaccctgaag agtggctttg gttttgccaa tgtgactacg aagcgacagt
      121 gggacttctc cagacctggc atcaggctcc tttctgtgaa ggcaaagaca gcacacattg
      181 ttctggaaga tggaactaag atgaaaggct actcctttgg ccatccctcc tctgttgctg
      241 gtgaagtggt ttttaatact ggcttaggag ggtacccgga agcacttact gatcccgcct
      301 acaaggggca gatcctcacc atggccaacc ctatcattgg gaacggtggg gctcccgaca
      361 ccactgcccg agacgaactg ggactgaata agtacatgga gtctgatggg atcaaggtgg
      421 caggtctgct ggttctgaat tacagtaatg actataacca ctggctggct accaagagtc
      481 tgggtcaatg gctgcaggag gaaaaggtcc ctgcaattta tggagtggat acaagaatgc
      541 tgactaaaat aattcgggat aagggtacca tgcttgggaa gattgaattt gaaggccagt
      601 ctgtggattt tgtggatccc aataagcaga atttgattgc tgaggtttca accaaggatg
      661 tcaaggtgtt tggcaaagga aaccccacga aagtggtagc tgtggactgt gggataaaaa
      721 acaatgtcat ccgcctgcta gttaagcgag gagctgaagt gcatttggtt ccctggaatc
      781 acgacttcac ccagatggag tatgatggac ttttgattgc tgggggacct gggaatccag
      841 ctcttgcaca gccactaatt cagaatgtga aaaagatttt ggagagtgac cgcaaagagc
      901 cattgtttgg aatcagtaca ggaaacataa taacaggatt ggctgctggt gccaaatcct
      961 acaagatgtc catggccaac agaggacaga accaacctgt tttgaatatc acaaacagac
     1021 aggctttcat aactgctcag aatcatggct atgctctgga caacacactc cctgctggct
     1081 ggaaaccact gtttgtgaat gtcaatgatc aaacaaacga ggggattatg catgagagca
     1141 aacctttctt cgctgtgcag ttccacccag aggtcagccc ggggccaaca gacactgagt
     1201 acctatttga ttccttcttc tccctgataa agaagggcaa aggcaccacc attacctcag
     1261 ttctgcccaa gccagcgttg gtggcatctc gtgtcgaggt ttccaaggtc ctcatcctgg
     1321 gatcaggagg tctgtccatt ggtcaggcag gtgaatttga ttactcggga tctcaagctg
     1381 tgaaagccat gaaggaagaa aatgtcaaaa cagtcctgat gaacccgaac atcgcatccg
     1441 tgcagaccaa cgaggtggga ttgaagcagg cagatgcagt ctactttctc cctattaccc
     1501 cccagtttgt cacagaagtt atcaaggctg aacggcctga tgggctgatt ctgggcatgg
     1561 gtggccagac agctctgaac tgtggagtgg aactattcaa gaggggtgtg ctcaaggaat
     1621 atggggtgaa ggtcttgggc acatcagttg agtccattat ggccacagaa gacaggcagc
     1681 tgttctcaga caagctgaat gagatcaacg agaagatcgc acccagtttt gcagtggaat
     1741 caatggagga tgccttgaag gcagcagaca ccattggcta ccctgtgatg attcggtctg
     1801 catatgctct gggtggctta ggctctggca tctgtcccaa taaggagacc ttaatagacc
     1861 ttggcacaaa agcatttgct atgaccaacc agatcctggt ggagcggtca gtgacaggtt
     1921 ggaaagaaat agaatatgaa gttgtccgag atgcagatga taactgtgtc acagtctgta
     1981 acatggaaaa tgttgacgcc atgggtgttc acacaggtga ctcggttgtc gtggccccag
     2041 cccagacact ctccaatgca gagttccaga tgttgagacg cacttcagtc aatgttgttc
     2101 gtcacttggg cattgtgggc gaatgcaaca ttcagtttgc tcttcacccc acttccatgg
     2161 aatactgtat cattgaagtg aatgccaggc tgtcccggag ttctgccctg gcctccaagg
     2221 ccactggcta cccactggca ttcattgcag caaagattgc tctaggaatc ccacttccag
     2281 aaatcaagaa tgttgtatct gggaagacct cagcctgctt cgaacctagc ctggattaca
     2341 tggtgaccaa gattcctcgc tgggatcttg accgtttcca tggaacatcc agccgaattg
     2401 gtagctcaat gaaaagtgtg ggcgaggtca tggccattgg tcgcaccttt gaggaaagtt
     2461 tccagaaggc tctgaggatg tgccatccat ctgtggatgg gttcactccc cggctcccaa
     2521 tgaataagga atggccagca aacctggatc tgaagaaaga gctgtctgag ccctccagca
     2581 cccgcatcta cgccattgct aaggccttgg agaacaacat gtccctcgac gaaattgtga
     2641 ggctcacgtc catcgacaag tggtttctgt acaagatgcg tgacatttta aacatggata
     2701 agacactgaa agggcttaac agtgactctg ttacagaaga aactctgaga aaggccaagg
     2761 agattgggtt ctcagacaag cagatttcaa aatgtttggg actgactgaa gcccagacaa
     2821 gagagctgag gttaaagaaa aacatccacc cttgggttaa acagattgat acattggctg
     2881 cagaataccc atcagtaaca aactacctgt atgttaccta caacggccag gagcacgata
     2941 tcaaatttga tgaacatgga ataatggttc tgggctgtgg tccataccac attggcagca
     3001 gtgtggaatt tgattggtgt gctgtctcca gtatccgtac actgcgccaa cttggcaaga
     3061 agacagtggt ggtgaattgt aacccagaga ctgtgagcac tgattttgat gagtgtgaca
     3121 aactctactt tgaagagctg tctttggaga gaatcctaga catctaccac caggaggcat
     3181 gtaatggctg catcatatca gttggcggcc agattccaaa caacttggcg gtcccgctgt
     3241 acaagaatgg tgtcaagatc atgggtacaa gccctctgca gatcgacagg gctgaggatc
     3301 gctccatctt ctcagctgtc ttagatgagc taaaggtggc ccaggctcca tggaaagctg
     3361 tgaacacttt gaatgaagca ctggaatttg caaactctgt gggctacccc tgcttactga
     3421 gaccttccta tgttttgagt gggtctgcca tgaacgtggt attctctgag gatgagatga
     3481 aaaggtttct tgaggaggcc actcgagtct ctcaggaaca cccggtggtg ctgaccaagt
     3541 ttgtggaggg ggcccgggaa gtagagatgg acgctgttgg caaagaagga cgggtcatct
     3601 cccatgccat ctctgaacat gttgaagatg caggtgtcca ctcaggagat gccaccctga
     3661 tgctacctac acagaccatc agccaaggag ccattgaaaa ggtgaaggat gccacacgaa
     3721 agattgcaaa agcctttgcc atctctgggc cattcaatgt ccagtttctt gtcaaaggaa
     3781 atgatgtctt ggtgattgag tgcaatctga gagcatcaag atccttcccc tttgtctcca
     3841 agactcttgg ggtggacttc attgacgtgg ctacaaaggt gatgatcggg gagagcattg
     3901 atgagaagcg acttcccacg ctggagcagc ccatcattcc ctctgactat gttgccatta
     3961 aggctccaat gttttcctgg ccccgactga gagatgctga ccctattctg agatgtgaga
     4021 tggcttctac tggagaggtg gcgtgcttcg gcgagggcat tcataccgcc ttcctaaagg
     4081 ccatgctgtc tacagggttt aagatacctc agaagggcat tctgattgga atccagcaat
     4141 cattccgtcc aagattcctt ggtgttgctg agcagttgca caatgaaggt ttcaagcttt
     4201 ttgccacaga agctacatca gactggctca atgccaacaa tgtccctgcc acccctgtgg
     4261 cttggccatc tcaggaagga cagaatccca gcctctcttc catcagaaag ttgataagag
     4321 atggaagcat tgacctagtg attaacctcc ccaataacaa caccaaattt gtccatgata
     4381 attacgtgat tcggaggaca gctgtggaca gtggaattgc tctcctcacc aatttccagg
     4441 tgaccaaact ttttgctgaa gctgtgcaga aatctcgcac tgtggactcc aagagtctgt
     4501 tccactacag gcagtacagt gctggaaagg ccgcctaaag cagtatgctg gtctggtgaa
     4561 ttcatcctcg agtcagctcg agtcatgctg caccaaaggg actggtccca gcctatctcc
     4621 aggaatggat ggtgttgcca aactttattt tggtttcctt tgttcttagt agtctgtatc
     4681 tttaaccact agattgttgt cagtcactgt ttcaaaacta taggttcttc ccaagtcatt
     4741 tgttcttcac aaggaattca accattcaca cattatcttt tgtagactga cttaacattt
     4801 catggtgctg gtttataacg attgaagtag aaaaagctgc tgccctatct cctgaattct
     4861 atactctaaa catactcttg ttttaaagta acttcagtca cacccaaagt ccacaaacag
     4921 gacagattac catgaaattt tgttaaaata aaatatggat ttaatttatg aatggcatca
     4981 tgatgcttgt gtattgttat ttttttttgg caatgattct cacttatata gtcaacctag
     5041 aaatagcatt ttttcttccc atgattcaca aagtgagatt ggatttcttt gatagatcct
     5101 tgcttcaggt tttagaagat gtcagcagat gacagaggac acagaagtgg ttattttctt
     5161 gatattcatg ttggatttta atataagtca agtgaaatgt ataggctgat tcaccttctg
     5221 ctccaatttg gaaaccctgt agaagttcct gttccttttg taggatggat tctggcagta
     5281 gcctgactct caccttgcat tctgtatacc acacatatta cacatagggc ctccattcct
     5341 ttacatgcaa catttttttt tctttctttc aagatagcat ttgttgcttt taagtgtttt
     5401 ggttattaca atactttaat tgtgaacttt taaataaaat actattaagt gaaaa
//
