LOCUS       NM_001417696            2697 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus calcineurin-like phosphoesterase domain containing 1
            (Cpped1), transcript variant 2, mRNA.
ACCESSION   NM_001417696 XM_006522013
VERSION     NM_001417696.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154508.2 and AC154509.2.
            
            On Mar 9, 2023 this sequence version replaced XM_006522013.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR14777535.3069192.1,
                                           SRR14777534.1307064.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849379, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-81                AC154508.2         47803-47883
            82-153              AC154508.2         62195-62266
            154-372             AC154508.2         69353-69571
            373-795             AC154509.2         149655-150077       c
            796-2697            AC154509.2         125162-127063       c
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 6.61 cM"
     gene            1..2697
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /note="calcineurin-like phosphoesterase domain containing
                     1"
                     /db_xref="GeneID:223978"
                     /db_xref="MGI:MGI:2443300"
     exon            1..81
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..1022
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /EC_number="3.1.3.16"
                     /note="isoform 2 is encoded by transcript variant 2;
                     calcineurin-like phosphoesterase domain-containing protein
                     1; Vcalcineurin-like phosphoesterase domain containing 1;
                     serine/threonine-protein phosphatase CPPED1"
                     /codon_start=1
                     /product="serine/threonine-protein phosphatase CPPED1
                     isoform 2"
                     /protein_id="NP_001404625.1"
                     /db_xref="GeneID:223978"
                     /db_xref="MGI:MGI:2443300"
                     /translation="MSAMEAADVFHRARGRTLDAFSSGKLFGDKKCLYGNQQLWGSQE
                     PLPEKEREWKGPFYFVQGADTQFGLMKAWSTGNCDAGGDEWGQEIRLTEQAVEAINKL
                     NPKPKFFVLCGDLVHAMPGTPWRQEQTRDLQRVLKAVDQDIPLVMVSGNHDLGNAPTA
                     ETVEEFCQTWGDDYFSFWVGGVLFLVLNSQFLYDASRCPALKQAQDHWLDQQLNIAEQ
                     KQCQHAIVFQHIPLFLQSIDEDDDYFNLTKTVRKELAEKLTRAGIRAVFSGHYHRNAG
                     GTYQNLDMVVSSAIGCQLGKDTHGLRVVAITAEKIVHRYYSLDELSQGGVEEDLKELL
                     KE"
     exon            82..153
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            154..372
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            373..795
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            796..2697
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2661..2666
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2697
                     /gene="Cpped1"
                     /gene_synonym="C530044N13Rik"
                     /note="major polyA site"
ORIGIN      
        1 agtcgctcgc catgtccgct atggaggcgg cggatgtttt ccacagagcc cggggcagga
       61 ccctggacgc gttttcctca ggaaaacttt ttggagacaa aaaatgtcta tatggaaatc
      121 aacaactttg gggcagccag gagccccttc cagaaaagga acgggaatgg aaaggtccat
      181 tctacttcgt ccaaggcgca gacactcagt ttggactgat gaaggcctgg tccaccggga
      241 actgtgacgc tggcggtgac gagtgggggc aggagatccg tctcacggag caagctgttg
      301 aggccatcaa caagctgaac cctaaaccca aattctttgt tctgtgtggt gacctcgttc
      361 atgccatgcc aggaactcca tggcggcaag aacagaccag ggacctgcag cgagtactga
      421 aagccgtcga ccaggacatc ccactggtga tggtcagcgg caaccatgac ttgggcaatg
      481 cccccacagc cgagactgtg gaggagttct gccagacatg gggagacgac tacttcagct
      541 tttgggtcgg gggcgtcctg ttcctggtgc tcaactccca gttcttgtac gatgcctcca
      601 ggtgccccgc actgaagcag gcccaggatc actggctgga ccaacagctg aacattgcag
      661 agcagaaaca gtgccagcac gccattgtct tccagcatat cccgctattc ctgcagagta
      721 ttgatgaaga tgacgactac ttcaacctca ctaagaccgt ccgtaaggaa ctggccgaaa
      781 agctcaccag agcaggtatc agagctgtgt tctccgggca ctaccacagg aatgccgggg
      841 gaacctacca gaatcttgac atggtagttt catctgctat cgggtgccag ctgggcaaag
      901 acacccacgg gctccgtgtg gtggccatca ctgcggagaa gattgttcat cgttactaca
      961 gtttagatga gctgagccag ggtggggtcg aggaggacct gaaggagctg ctgaaggagt
     1021 gactggctcc cacagagtcc acccagcctt cacaccatca ccttccattt tgccagaata
     1081 atctcagccc cttatagaaa tgtctgagca gaaaggcggg cttgtaaaca gatgtgcttt
     1141 cacatcagtc aaactgctgg gtcctaccct tatttcaaaa gagaactgcc tttccttgat
     1201 aagacagcta cgggtgtttt ctaattgtgg tgtgagactt cccacgtgat gtttgggtga
     1261 attcttctca ttgtgcagct tttaactctg cccttgaatc tactgtttct gacttcaata
     1321 accacctact gccctcaatc ccaactcagt acccaagagt gatcttaata attcctccaa
     1381 catcccccca ccccaccccc agtcccaggg ccacataggt ttgtcgtcat tgtaacagat
     1441 agcgtcatag ccatcattga ctgcaacttt caggactctc attactgctg atgctatgaa
     1501 caccgtgcag ggagtccacg ccaggctgtt tgcctttctg atgacaaacg tcacctcaga
     1561 catgtgcaga ctctgttcca gaagaccaga atggaagcag caacttgaag accctgtaca
     1621 gcccacatgt ttccctgtgt gtattctccc gatgcaggcg gcccaccccg ttgtcagcta
     1681 tgacgtggcg ggaaagctgg tcttgacaca gacctctccc aagaagaaca cagaactgtg
     1741 tcattgggta taatttacat tataccatgt tatttgccac ttacataaca ctattcctgg
     1801 acagaaaaga gtgtgagttt cttaaaatcc ttttcatcat ggaattcgct cttctgcctc
     1861 ccctgggagc tctgacctct gtggaatttg ctctgtgtgc cagccatcct ggtgcctaag
     1921 taaccagggc cactacatcc tgccaaggaa gttttacagt atcctgcagc gacactatag
     1981 aatctgaaac caactttaaa aacccactgg ttataaatga accgcaaagc ccactaaatt
     2041 agaaaacttt cttgttaaaa ggttttagtc aatgtagcaa aaccatgaga aattaaataa
     2101 aaagataatt ggatatgtaa attcataagg aacaaaagat acaagaagtt aattatttta
     2161 tatattagtg acacaccaga gcccattatt aggaagcaca agaaaagtaa tttttcaaac
     2221 cagagtgatc ttgcagtgct tggctgtgtt cctatttgtt tttgtttctt acagcagagt
     2281 ataagagatc aggagaggtc cctggtccta aaatgtatag gcttgattca atgacaagag
     2341 aaagattagt catagtgggc tgaaggcatg ccccttgtcc aagctgcata aggaaaacgc
     2401 agccttagaa tggggacaag gatatgggat agagcaaagg aaacgaagta agtgcttgtc
     2461 ctcaaaacac atacgtttcc gagctgactc agaaacctag catgtgctaa ggatggcctg
     2521 gcgttgccag ttttcaacag aacagcggta tccctgtggg gcctgctgat gtggggagca
     2581 aaagtgtgta atctatgtaa ctcagatagc aagacactat tctgttctct cctaggcctt
     2641 ttcttaaaaa ataaaaataa aataaaaata aaaaacaata aagacttccc acatgcc
//
