LOCUS       NM_025511                448 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus cytochrome c oxidase assembly protein 20 (Cox20),
            mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_025511
VERSION     NM_025511.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 448)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY779933.1 and AK009178.1.
            
            On Jul 15, 2005 this sequence version replaced NM_025511.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU843553.1, BU534411.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6                 BY779933.1         1-6
            7-448               AK009178.1         1-442
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 83.16 cM"
     gene            1..448
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /note="cytochrome c oxidase assembly protein 20"
                     /db_xref="GeneID:66359"
                     /db_xref="MGI:MGI:1913609"
     exon            1..56
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /inference="alignment:Splign:2.1.0"
     exon            57..171
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /inference="alignment:Splign:2.1.0"
     exon            172..235
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /inference="alignment:Splign:2.1.0"
     exon            236..448
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      421..426
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /note="hexamer: ATTAAA"
     polyA_site      421
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /note="major polyA site"
     polyA_site      445
                     /gene="Cox20"
                     /gene_synonym="2310005N03Rik; Fam36a"
                     /note="major polyA site"
ORIGIN      
        1 ggagaggact ggtgcccatg gcggccgccc cggagcccca cgagacggag aaaaagccct
       61 tcaagctcct aggtatttta gatgttgaga acactccatg tgctcgagaa tctatactct
      121 atggctcatt aggatctatt gtgactggac ttggacattt cttggtgacc agtagaatta
      181 gaagatcatg tgatgttgga gtaggaggat ttatcctggt gactttagga tgctggttcc
      241 actgtaggta taatttcgct aagcagagga tccaggaaag aattgccaga gaaggaataa
      301 aaaataagat tttatatgaa agcacccacc ttgatcctga aagaaaaatg aagaccaaca
      361 acagcagcta agcaacttca atcagcttta aaacccaaac aacttgtaaa tcaaccatag
      421 attaaaaaac tcaaacgtgt gtaaactg
//
