LOCUS       NM_001163456            1341 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus cytochrome c oxidase assembly protein 18 (Cox18),
            transcript variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001163456
VERSION     NM_001163456.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1341)
  AUTHORS   Evsikov AV, Graber JH, Brockman JM, Hampl A, Holbrook AE, Singh P,
            Eppig JJ, Solter D and Knowles BB.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 1341)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162171.7, BC038311.1, CX225681.1, DV661727.1 and BE690958.1.
            
            [WARNING] On Nov 28, 2023 this sequence was replaced by
            NM_001163456.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC038311.1, SRR13861889.96716.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: reported by MitoCarta
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-230               AC162171.7         82141-82370
            231-513             BC038311.1         1-283
            514-733             CX225681.1         441-660
            734-1122            DV661727.1         342-730
            1123-1341           BE690958.1         1-219               c
FEATURES             Location/Qualifiers
     source          1..1341
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 44.32 cM"
     gene            1..1341
                     /gene="Cox18"
                     /note="cytochrome c oxidase assembly protein 18"
                     /db_xref="GeneID:231430"
                     /db_xref="MGI:MGI:2448532"
     exon            1..381
                     /gene="Cox18"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1056
                     /gene="Cox18"
                     /note="isoform 1 is encoded by transcript variant 1;
                     mitochondrial inner membrane protein COX18; COX18
                     cytochrome c oxidase assembly homolog; cytochrome c
                     oxidase assembly protein COX18, mitochondrial"
                     /codon_start=1
                     /product="cytochrome c oxidase assembly protein COX18,
                     mitochondrial isoform 1"
                     /protein_id="NP_001156928.1"
                     /db_xref="CCDS:CCDS51543.1"
                     /db_xref="GeneID:231430"
                     /db_xref="MGI:MGI:2448532"
                     /translation="MLCRSCAGWLRSLPTLRLPAPGSPPAWSSARLPALPVWAAASVS
                     AASPGGWYEALAASAPVRTAEEVLLGAQEATGLPWWSNIILSTVALRGAVTLPLAAYQ
                     HYILAKVENLQPEIKDIAKRLNQEVAVCARQFGWSKRVARLTYLKNMRRLISELYVRD
                     NCHPFKATVLVWVQLPMWVFISVALRNLSTGATHSDAGISVQEQLAAGGTLWFPDLTA
                     VDSTWILPVSVGVVNLLIVEIFALQKIGTSRFQMYVTNFVRAVSVLMIPVAATVPSAL
                     VLYWLCSSLMGLAQNLLLRSPGFRQLCRIPPSKSDSETPYRDLSAAFCAKFLSRKR"
     exon            382..482
                     /gene="Cox18"
                     /inference="alignment:Splign:2.1.0"
     exon            483..646
                     /gene="Cox18"
                     /inference="alignment:Splign:2.1.0"
     exon            647..771
                     /gene="Cox18"
                     /inference="alignment:Splign:2.1.0"
     exon            772..879
                     /gene="Cox18"
                     /inference="alignment:Splign:2.1.0"
     exon            880..1331
                     /gene="Cox18"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcatgcgcgc aacctcctgg tgctagtgct ctagttggcc gcccgctccg tgtaaccatg
       61 ctgtgccggt cgtgtgccgg gtggctcagg tcgctgccca ccctgcggct cccggcaccg
      121 ggatcaccgc ccgcctggag cagcgcgcgg ctcccagccc ttccggtatg ggcagccgct
      181 tcggtgtctg cggcctctcc aggtggctgg tatgaggccc tggcagcgtc ggcgccggtg
      241 cgcaccgcgg aggaagtgct gctgggcgcg caggaggcta ccggcctccc ctggtggagc
      301 aacatcatac tcagcaccgt tgccctgcgc ggtgctgtca ctctgcccct ggccgcctat
      361 cagcactaca tcctggctaa ggtggaaaac ttgcaaccag aaataaaaga catcgccaag
      421 cgccttaacc aagaagttgc agtctgtgcc cgtcagtttg gatggtccaa gagagtggct
      481 agactcacct atctgaagaa catgcggaga cttatctcag agctgtatgt ccgtgacaac
      541 tgccaccctt tcaaagccac ggtgctggtc tgggtccagc ttccaatgtg ggttttcatc
      601 tctgtcgccc tccggaacct cagcactggg gccacacatt cagacgcagg catttctgtt
      661 caggaacagt tagctgctgg cgggacgctg tggtttcctg acctcaccgc agtggattcc
      721 acctggattc tgcctgtctc tgttggtgtt gtcaacctac tgatagtgga gatttttgct
      781 ctacaaaaaa ttgggacgtc tcgttttcaa atgtatgtta caaattttgt ccgagctgta
      841 tccgtgttga tgattccagt tgctgcaaca gtaccctcgg cgcttgttct ctactggctg
      901 tgctccagcc tcatgggcct cgcacagaac ctgctgctgc gctcccctgg gttccgccag
      961 ctctgccgga taccaccaag caagtccgac tcagagaccc cgtaccgaga cctctctgct
     1021 gccttttgcg ccaagttcct ttcaagaaaa cgatgagagt ccactcccaa cacccttgaa
     1081 ataattacaa atgtcactgt cagtttcatg cattgaattt ggaagtctat atttaaatat
     1141 catgaagcac tgtgggaaat tcagatgtat ttgacgttta gtaattaaaa actaaatatt
     1201 caattgtaag agtataaaaa taacatagga tgcctggcct tattcataaa aatcatagtt
     1261 ttgctgagaa caggattagg tcctgtgtga tctctaccca actgtccaca aataaagttt
     1321 tgtaagttaa aaaaaaaaaa a
//
