LOCUS       NM_019817               1695 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus coatomer protein complex, subunit zeta 1 (Copz1),
            transcript variant 2, mRNA.
ACCESSION   NM_019817
VERSION     NM_019817.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1695)
  AUTHORS   Slater,L.H., Hett,E.C., Clatworthy,A.E., Mark,K.G. and Hung,D.T.
  TITLE     CCT chaperonin complex is required for efficient delivery of
            anthrax toxin into the cytosol of host cells
  JOURNAL   Proc Natl Acad Sci U S A 110 (24), 9932-9937 (2013)
   PUBMED   23716698
REFERENCE   2  (bases 1 to 1695)
  AUTHORS   Moelleken,J., Malsam,J., Betts,M.J., Movafeghi,A., Reckmann,I.,
            Meissner,I., Hellwig,A., Russell,R.B., Sollner,T., Brugger,B. and
            Wieland,F.T.
  TITLE     Differential localization of coatomer complex isoforms within the
            Golgi apparatus
  JOURNAL   Proc Natl Acad Sci U S A 104 (11), 4425-4430 (2007)
   PUBMED   17360540
  REMARK    GeneRIF: analysis of differential localization of coatomer complex
            isoforms within the Golgi apparatus
REFERENCE   3  (bases 1 to 1695)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC164069.9.
            
            On Nov 4, 2017 this sequence version replaced NM_019817.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085314.1, AB037370.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-54                AC164069.9         70557-70610         c
            55-123              AC164069.9         54329-54397         c
            124-205             AC164069.9         52742-52823         c
            206-297             AC164069.9         52078-52169         c
            298-353             AC164069.9         48721-48776         c
            354-431             AC164069.9         46888-46965         c
            432-483             AC164069.9         46713-46764         c
            484-522             AC164069.9         45573-45611         c
            523-1695            AC164069.9         43633-44805         c
FEATURES             Location/Qualifiers
     source          1..1695
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 58.74 cM"
     gene            1..1695
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /note="coatomer protein complex, subunit zeta 1"
                     /db_xref="GeneID:56447"
                     /db_xref="MGI:MGI:1929063"
     exon            1..54
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            55..123
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            124..205
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            206..297
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            298..353
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            354..431
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            432..483
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            484..522
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     exon            523..1695
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1674..1679
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /note="hexamer: AATAAA"
     polyA_site      1695
                     /gene="Copz1"
                     /gene_synonym="5930435A22Rik; D4Ertd360e"
                     /note="major polyA site"
ORIGIN      
        1 ttgtgcgact ccacgtcggc agcagctacg ggcaagatgg aggcgctgat tttggagccc
       61 tccctgtaca ctgtcaaggc catcctgatt ctggacaatg atggagaccg actcttcgcc
      121 aagtactatg acgacaccta ccccagtgtc aaggagcaaa aggcctttga gaagaacatt
      181 ttcaacaaga cccatcggac ggatagtgaa atcgctctgt tggaaggatt gacagtggtc
      241 tataaaagta gcatcgatct ctatttctat gtgattggca gctcctatga aaatgagctg
      301 atgcttatgg ctgttctgaa ctgcctcttc gattccctga gccagatgct gaggaaaaat
      361 gtagaaaagc gagctttgct ggagaacatg gagggcctct tcttggctgt ggatgaaatt
      421 gtagatggag gggtgatcct agagagcgac ccccagcaag tggtgcaccg ggtggctttg
      481 aggggtgaag acgtccccct tacagagcag accgtgtctc aggtgctgca gtcagccaaa
      541 gaacagatca agtggtccct ccttcggtga aagtgttctg agcccagttc cttgcccctc
      601 aaaacccaca tctgctgtga cttcttatcc aggcccccaa cttatgtcct tagggtcatc
      661 ttggagaacc acaatggatt cttctgtctc tatactttct ggggttcttt cccctccctc
      721 tcatgagagt aaagtcccca gcagatttga gtgagtcagg ggaaacaccc tcttcctact
      781 tacacttgtc tcgcccaccc cccattctct ccttggtttc ttggcccttt actgtggctg
      841 tacttcagat catcaaagca agagaaagaa tgtgctgagt gttttcttcc ctgtgcctta
      901 agggccctca tcccagcagc ccatatagcc agcaaatgga ggactcctaa cttcagcaca
      961 agtgggtttg gagtggcaga ggccatactt tctttgcctc agcttctctc cttcctgctg
     1021 ccctatcctc tgccttagaa gaaatgggaa cagcttgtag ggaagggaca agctgcagag
     1081 gaacagtgat ttaaaggccc ttggagctag tcccctcagc ctcaactttg atctggcctt
     1141 tagcctcaaa gctgctgtac ctgcacatgg tcctgagaac atctctctag gcctgtacca
     1201 cacctctctg cctgtagaac ctgtgagatc attgcctgtg gcctctgtca ccctggagca
     1261 aagccagacc ttggaaccca aactacttta gtccctagaa aagtttctgc tcagaactga
     1321 ggatggaaag agccgtaatg acgttggcct tgccgtgttc cttctcctca gcgccacact
     1381 cacatatttc tctgctttgg ttctacaatc tgttgttgag ttccccctct ctgcatcagt
     1441 cttccctgga aatggaggac ctggtgcagt acctttcctc tgaggcttgg attcccgttc
     1501 ttgggtgtaa tgttgctccc tgatcccata tccctgtgaa aatgacttag gaaaaaacgt
     1561 ttctgagcaa gcattctggc ccatgcactg gctgaagtgg gcagactgga ggcggcctct
     1621 gcaagaaatg gagtcaggcg aagtccacct tgtacgctgc tgtgcggctt aggaataaag
     1681 tgaatctctt ccaaa
//
