LOCUS       NM_001163425             458 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus COP9 signalosome subunit 9 (Cops9), transcript variant
            1, mRNA.
ACCESSION   NM_001163425 XM_888711 XM_908107
VERSION     NM_001163425.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC049759.1 and AA764377.1.
            
            On or before Jul 22, 2009 this sequence version replaced
            XM_908107.3, XM_888711.3.
            
            Transcript Variant: This variant (1) encodes the functional
            protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049759.1, BU843368.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-426               BC049759.1         1-426
            427-458             AA764377.1         244-275
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 46.55 cM"
     gene            1..458
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /note="COP9 signalosome subunit 9"
                     /db_xref="GeneID:66915"
                     /db_xref="MGI:MGI:1914165"
     exon            1..106
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..217
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /note="myeloma-overexpressed gene 2 protein homolog;
                     myeloma overexpressed 2"
                     /codon_start=1
                     /product="COP9 signalosome complex subunit 9"
                     /protein_id="NP_001156897.1"
                     /db_xref="CCDS:CCDS48325.1"
                     /db_xref="GeneID:66915"
                     /db_xref="MGI:MGI:1914165"
                     /translation="MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHADFF
                     NDFEDLFDDDDVQ"
     exon            107..179
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /inference="alignment:Splign:2.1.0"
     exon            180..438
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      404..409
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /note="hexamer: AATAAA"
     polyA_site      426
                     /gene="Cops9"
                     /gene_synonym="1110002M09Rik; Myeov2"
                     /note="major polyA site"
ORIGIN      
        1 agaaggggct ggccggaagt gagcgcaacg ccgccttgtc gagatgaaac ccgcagtgga
       61 tgagatgttc cccgagggcg cggggcccta tgtggacctg gatgaggctg gaggtagcac
      121 cgggcttttg atggacctgg cagccaatga gaaggccgtt catgcagact tttttaatga
      181 ttttgaagac ctttttgatg atgatgatgt ccagtgaggc cgcccggtcc tatgtgctcc
      241 atgtctgtga tgtgtctgga gtctctcggg acacgaccag ctgattgtag acaccgtgtt
      301 gatatcacta gaaatgaaga ccttgtcaac caatagagga actgtctgaa ccaactgggt
      361 actgatgtct ctgggaatgc cagcccgtgt ccttgtttaa gttaataaag aacactgtaa
      421 cacgcagggt gattttaaaa aaaaaaaaaa aaaaaaaa
//
