LOCUS       XM_006534955            1267 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus COP9 signalosome subunit 4 (Cops4),
            transcript variant X5, mRNA.
ACCESSION   XM_006534955
VERSION     XM_006534955.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Nov 18, 2023 this sequence was replaced by
            NM_001425474.1.
            
            On Sep 21, 2020 this sequence version replaced XM_006534955.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..1267
                     /gene="Cops4"
                     /gene_synonym="D5Ertd774e; SGN4"
                     /note="COP9 signalosome subunit 4; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 9 ESTs, 1073 long SRA reads, 1 Protein, and 94%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:26891"
                     /db_xref="MGI:MGI:1349414"
     CDS             209..1267
                     /gene="Cops4"
                     /gene_synonym="D5Ertd774e; SGN4"
                     /codon_start=1
                     /product="COP9 signalosome complex subunit 4 isoform X4"
                     /protein_id="XP_006535018.1"
                     /db_xref="GeneID:26891"
                     /db_xref="MGI:MGI:1349414"
                     /translation="MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGTEQLEA
                     LKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQ
                     VASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDD
                     PVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVH
                     ESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGN
                     QLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAK
                     HEKPCQHGTSRSSHFVSK"
ORIGIN      
        1 ctgggcggtc ctcaaaccgg aggagaggag tctggtgtca ctcaactcgg agggcggagc
       61 taattcctgc tcccctatcc ggcgctctgg cccacagaga cgctgctcta tggcacctcg
      121 cgtcccctct gcccgcctcc tggaggacca cgctcgtttt cttcttggca gcgagaggtc
      181 ccgcagccgt ggctgagctg gaggaaagat ggcggctgcc gtgcgacagg atttggccca
      241 gctcatgaat tcaagcggct ctcataaaga tctggcgggc aaatatcgtc agattctgga
      301 aaaagccatt cagttatctg ggacagaaca actagaagca ttgaaagctt ttgtggaagc
      361 gatggtgaat gagaatgtca gcctcgtgat ctcacggcaa ctgctaacag atttctgcac
      421 acacctccct aacctgccag acagcacagc caaggaggtc taccatttca ccttggagaa
      481 gatccagcct cgggtcattt cctttgaaga gcaggttgct tccataagac agcatctggc
      541 atctatttat gagaaggagg aagactggag aaatgcagcc caagtgttgg tggggattcc
      601 tctggaaaca ggacaaaaac agtacaacgt agattataag ctggagactt acctgaagat
      661 tgcaaggcta tacctggagg atgacgatcc cgtccaggcc gaggcttaca taaaccgagc
      721 gtccttactt cagaacgaat ccacaaatga acagttacag atacactata aggtttgcta
      781 tgcgcgtgtc cttgattaca gaaggaaatt cattgaggcc gcccagaggt acaatgagct
      841 ctcttacaag acaatagtcc atgaaagtga gagactagag gccttaaagc atgcactgca
      901 ctgcaccatc ttagcatcgg caggacagca gcgctctcgg atgctggcta ctctttttaa
      961 ggatgaaagg tgccagcaac tagctgcata tgggatccta gagaagatgt acctagacag
     1021 aatcatcaga gggaaccagc ttcaagaatt tgctgctatg ctgatgccac accaaaaagc
     1081 aacgacagct gatggttcca gcatcttgga cagagctgtt attgagcata atttgttgtc
     1141 agcaagcaaa ttatataaca atatcacctt tgaagaactt ggagctcttt tagagatccc
     1201 tgcagctaag cacgagaagc cctgccaaca tgggacaagc agatccagtc actttgtttc
     1261 caagtaa
//
