LOCUS       NM_025417                824 bp    mRNA    linear   ROD 05-FEB-2024
DEFINITION  Mus musculus COMM domain containing 4 (Commd4), mRNA.
ACCESSION   NM_025417
VERSION     NM_025417.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK004174.1.
            
            On Apr 5, 2007 this sequence version replaced NM_025417.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK004174.1, BU520523.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-824               AK004174.1         2-825
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 30.89 cM"
     gene            1..824
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /note="COMM domain containing 4"
                     /db_xref="GeneID:66199"
                     /db_xref="MGI:MGI:1913449"
     exon            1..28
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..625
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /codon_start=1
                     /product="COMM domain-containing protein 4"
                     /protein_id="NP_079693.1"
                     /db_xref="CCDS:CCDS40647.1"
                     /db_xref="GeneID:66199"
                     /db_xref="MGI:MGI:1913449"
                     /translation="MRFRFCGDLDCPDWVLAEISTLAKISSVKLRLLCSQVLKELLGQ
                     GIDYEKILKLTADAKFESGDVKATVAVLSFILSSAAKHSVDSDSLSSELQQLGLPKEH
                     ATSLCRCYEEKQSPLQEHLRACSLRVNRLASVGWRVDYTLSSSLLHSVEEPMVHLQLQ
                     VVPAPGTQAQPVSMSLSADKFQVLLAELKQAQTMMTALG"
     exon            29..100
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            101..166
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            167..206
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            207..326
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            327..407
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            408..584
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            585..824
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      824
                     /gene="Commd4"
                     /gene_synonym="1110039H05Rik"
                     /note="putative"
ORIGIN      
        1 gctctggatt ggatctcctg acatcatgag gttccggttc tgtggcgatc tggactgtcc
       61 cgactgggtc ctggcagaga tcagcacact ggccaaaatt tcctctgtga agctgcgact
      121 gctgtgtagc caggtgctaa aggagcttct gggtcagggg attgattatg agaagatctt
      181 gaagcttact gctgatgcca agtttgagtc tggagacgtg aaggccacgg tcgcggtgct
      241 gagtttcatc ctgtccagtg cagccaagca tagtgtcgac agtgattcct tgtccagtga
      301 gctgcagcag ctggggctgc ccaaagagca tgccaccagc ctgtgccgct gttacgaaga
      361 gaagcagagc cccctgcagg agcaccttcg ggcctgtagc ctacgtgtga acaggctggc
      421 cagcgtgggc tggcgggtag actacaccct gagctccagc ctgcttcatt ctgtggagga
      481 gcccatggta catctgcagc tacaggttgt gcctgctcca ggtacccagg cccaacctgt
      541 ttccatgtcc ctctcggcag acaagttcca ggttctcctg gcagaactga agcaagccca
      601 gaccatgatg actgctttgg gctgagaaga gtgttcccag cctctgtgag gcctctctgc
      661 ctgcactgag tggctgccct ccacacgcct cttactaggg tggccctggc ctcttagtcc
      721 tggttagggc tactggggat cgtccccaaa attgccttct ttcttttgaa agaaagtact
      781 tgccaaccat ttttataggc aagaagaata aacaagtgta cagc
//
