LOCUS       NM_001243008           10845 bp    mRNA    linear   ROD 21-AUG-2024
DEFINITION  Mus musculus collagen, type VI, alpha 3 (Col6a3), transcript
            variant 1, mRNA.
ACCESSION   NM_001243008 XM_003085326 XM_003086176 XM_003086177 XM_003086178
            XM_003086179 XM_003086180
VERSION     NM_001243008.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 10845)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 10845)
  AUTHORS   Oh,J., Park,C., Kim,S., Kim,M., Kim,C.S., Jo,W., Park,S., Yi,G.S.
            and Park,J.
  TITLE     High levels of intracellular endotrophin in adipocytes mediate
            COPII vesicle supplies to autophagosome to impair autophagic flux
            and contribute to systemic insulin resistance in obesity
  JOURNAL   Metabolism 145, 155629 (2023)
   PUBMED   37302692
REFERENCE   3  (bases 1 to 10845)
  AUTHORS   Fidalgo,M.F., Fonseca,C.G., Caldas,P., Raposo,A.A., Balboni,T.,
            Henao-Misikova,L., Grosso,A.R., Vasconcelos,F.F. and Franco,C.A.
  TITLE     Aerocyte specification and lung adaptation to breathing is
            dependent on alternative splicing changes
  JOURNAL   Life Sci Alliance 5 (12), e202201554 (2022)
   PUBMED   36220570
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 10845)
  AUTHORS   Ahuja,N., Hiltabidle,M.S., Rajasekhar,H., Voss,S., Lu,S.Z.,
            Barlow,H.R., Cowdin,M.A., Daniel,E., Vaddaraju,V., Anandakumar,T.,
            Black,E., Cleaver,O. and Maynard,C.
  TITLE     Endothelial Cyp26b1 restrains murine heart valve growth during
            development
  JOURNAL   Dev Biol 486, 81-95 (2022)
   PUBMED   35364055
REFERENCE   5  (bases 1 to 10845)
  AUTHORS   Lam,D.D., Williams,R.H., Lujan,E., Tanabe,K., Huber,G., Saw,N.L.,
            Merl-Pham,J., Salminen,A.V., Lohse,D., Spendiff,S., Plastini,M.J.,
            Zech,M., Lochmuller,H., Geerlof,A., Hauck,S.M., Shamloo,M.,
            Wernig,M. and Winkelmann,J.
  TITLE     Collagen VI Regulates Motor Circuit Plasticity and Motor
            Performance by Cannabinoid Modulation
  JOURNAL   J Neurosci 42 (8), 1557-1573 (2022)
   PUBMED   34965974
REFERENCE   6  (bases 1 to 10845)
  AUTHORS   Dziadek,M., Darling,P., Zhang,R.Z., Pan,T.C., Tillet,E., Timpl,R.
            and Chu,M.L.
  TITLE     Expression of collagen alpha 1(VI), alpha 2(VI), and alpha 3(VI)
            chains in the pregnant mouse uterus
  JOURNAL   Biol Reprod 52 (4), 885-894 (1995)
   PUBMED   7780011
REFERENCE   7  (bases 1 to 10845)
  AUTHORS   Epstein,D.J., Bardeesy,N., Vidal,S., Malo,D., Weith,A., Vekemans,M.
            and Gros,P.
  TITLE     Characterization of a region-specific library of microclones in the
            vicinity of the Bcg and splotch loci on mouse chromosome 1
  JOURNAL   Genomics 19 (1), 163-166 (1994)
   PUBMED   8188220
REFERENCE   8  (bases 1 to 10845)
  AUTHORS   Vidal,S.M., Epstein,D.J., Malo,D., Weith,A., Vekemans,M. and
            Gros,P.
  TITLE     Identification and mapping of six microdissected genomic DNA probes
            to the proximal region of mouse chromosome 1
  JOURNAL   Genomics 14 (1), 32-37 (1992)
   PUBMED   1358796
REFERENCE   9  (bases 1 to 10845)
  AUTHORS   Schurr,E., Skamene,E., Morgan,K., Chu,M.L. and Gros,P.
  TITLE     Mapping of Col3a1 and Col6a3 to proximal murine chromosome 1
            identifies conserved linkage of structural protein genes between
            murine chromosome 1 and human chromosome 2q
  JOURNAL   Genomics 8 (3), 477-486 (1990)
   PUBMED   1981051
REFERENCE   10 (bases 1 to 10845)
  AUTHORS   Chu,M.L., Mann,K., Deutzmann,R., Pribula-Conway,D., Hsu-Chen,C.C.,
            Bernard,M.P. and Timpl,R.
  TITLE     Characterization of three constituent chains of collagen type VI by
            peptide sequences and cDNA clones
  JOURNAL   Eur J Biochem 168 (2), 309-317 (1987)
   PUBMED   3665927
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ098732.1, AF034136.1, AC158773.6, CN667533.1, AK076391.1,
            CF734596.1, BQ561449.1, BQ560536.1, AC110895.14, FQ976558.1,
            AA118378.1 and BX638221.1.
            
            On or before Jul 15, 2011 this sequence version replaced
            XM_003085326.1, XM_003086179.1, XM_003086177.1, XM_003086176.1,
            XM_003086178.1, XM_003086180.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-342               CJ098732.1         2-343
            343-570             AF034136.1         300-527
            571-690             AC158773.6         148323-148442       c
            691-1600            AF034136.1         648-1557
            1601-1713           CN667533.1         365-477
            1714-2148           AC158773.6         136144-136578       c
            2149-2611           AF034136.1         2106-2568
            2612-2748           AC158773.6         133408-133544       c
            2749-3321           AC158773.6         131452-132024       c
            3322-3924           AC158773.6         130319-130921       c
            3925-4018           AC158773.6         128176-128269       c
            4019-6836           AK076391.1         1-2818
            6837-6948           CF734596.1         387-498
            6949-7169           BQ561449.1         1-221               c
            7170-7175           BQ560536.1         17-22
            7176-7290           BQ560536.1         24-138
            7291-7291           AC158773.6         104465-104465       c
            7292-7482           BQ560536.1         140-330
            7483-7483           AC158773.6         102258-102258       c
            7484-7672           BQ560536.1         332-520
            7673-7913           AC158773.6         101828-102068       c
            7914-8010           AC158773.6         100181-100277       c
            8011-8709           AC158773.6         98949-99647         c
            8710-8812           AC158773.6         97634-97736         c
            8813-9064           AC110895.14        71-322
            9065-9343           FQ976558.1         1-279
            9344-9350           FQ976558.1         280-286
            9351-9430           FQ976558.1         287-366
            9431-9567           AC110895.14        691-827
            9568-9711           AC110895.14        2658-2801
            9712-10134          AA118378.1         1-423
            10135-10435         AC110895.14        8792-9092
            10436-10845         BX638221.1         1-410               c
FEATURES             Location/Qualifiers
     source          1..10845
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 45.53 cM"
     gene            1..10845
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /note="collagen, type VI, alpha 3"
                     /db_xref="GeneID:12835"
                     /db_xref="MGI:MGI:88461"
     exon            1..226
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            227..342
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     CDS             255..10109
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; type VI collagen alpha 3 subunit; collagen
                     alpha3(VI); collagen alpha 3 chain type VI; procollagen,
                     type VI, alpha 3"
                     /codon_start=1
                     /product="collagen alpha-3(VI) chain isoform 1 precursor"
                     /protein_id="NP_001229937.1"
                     /db_xref="GeneID:12835"
                     /db_xref="MGI:MGI:88461"
                     /translation="MRKHRHLPLVAVFSLLLSGIATTHAQQHGDVKNGAAADIVFLVD
                     SSWSAGKDRFLLVQEFLSDVVESLAVGDNDFHFALVRLNGNPHTEFLLNTYHSKQEVL
                     SHIVNMSYIGGSNQTGKGLEYVIHSHLTEASGSRAADGVPQVIIVLTDGQSEDGFALP
                     SAELKSADVNVFAVGVEGADERALGEVASEPLSMHVFNLENVTSLHGLVGNLVSCIHS
                     SVNPERAGDKESLKDITAQDSADIIFLIDGSQNTGNANFDVIRDFLVNVLERLSVGNQ
                     QVQVGVVQYSEEPITMFSLNSYPSKAAVLDAVKGLSLVGGESANIGQALDFVVENHFT
                     RAGGSRVEEGVPQVLVLISAGPSSDEIRDSVVALKQASVFSFGLGAQAASRAELQHIA
                     TDDSLVFTVPEFRSFGDLQEQILPYLVGVAQRHIVLQPPAIVTQVMEVNKRDIVFLVD
                     GSSSLGPSNFNAIRDFVTRVIQRLEIGQDLVQVSVAQYADTVKPEFYLNSYTNKRDAI
                     TAVRKMRALNGSALYTGSSLDFVRNNLFTSSAGHRAAEGVPKLLVLITGGKSLDEVSQ
                     PAQELKRGSIMALAVGSKAADEDELKEIAFDSSLVFIPAEFRPAPLQNMLPSLMAPLR
                     TLTGTTEVHVNKRDIIFLLDGSDNVGKNNFPYVRDFVTNLVNSLDVGSDNIRVGLVQF
                     SDTPVTEFSLDTYQTKSELLAHLRRLQLKGGSGLNAGSALSYIHANHFTEAGGSRTRE
                     HVPQLLLLLMAGPSEDAYLQAANALVRSGVLTFCVGTNRADKAELEHIAFNPSLVYLM
                     DDFRSLPSLPQQLIQPLTTYVSGGVQEVPLSQPESKRDILFLFDGSVNVLGQFPAVRD
                     FLYRIIEELDVKPDGTRVAIAQFSDDVRLESRFSEHQTKAEILNLVKKMKLKTGKALN
                     LGYALDYALRNIFVRSAGSRIEDNVQQFLVLLVAGRSSDAVAGPASSLKQRGVVPFIF
                     QAKNANPSELEQIVLSPAFILAAESLPKIGDLQSQIVSLLKAEQGSGPVSGEKDVVFL
                     IDGSEGVRSGFPLLKDFVQRVVESLDVGPDRVRVALVQYSDRTRPEFYLNSHMDQQGV
                     ISAIRRLTLLGGPTPNTGAALEFVLRNILTSSTGSRIAEGVPQLLIVLTAEPSGDDVR
                     GPSVVLKQGGAVPIGIGIGNADISEMQTISFIPDFAVAIPTFRELGTIQQVISERVIQ
                     LNREELSSLKPILTPSTGAGVGSKKDVVFLIDGSRNAGPEFQYIRTLIERIVEYLDIG
                     FDTTRVAVIQFSEDSKMEFPLNAHFSKDEVQNAVRRLRPKGGSQVYIGNALEYVLKNI
                     FQRPLGSRIEEGVPQFLVLISSGKSDDEVDDSAVELKQFGVAPLTIARHTDQEELVKI
                     SLSPEYVYSVSTFRELPRLEQKLLTPITTLTSQQIHQILASTRYPPSVVESDAADIVF
                     LIDSSDAVKPDGIAHIRDFVSRIVRRLNIGPSKVRIGVVQFSNDVFPEFYLKTHKSQS
                     SVLEAIRRLRFKGGSPLNTGRALEFVARNLFVKSAGSRIEDGVPQHLVLFLGGKSQDD
                     VARHAQVISSSGIVSLGIGDRNIDRTDLQTITNDPRLVFTVREFRELPNIEERVMLSF
                     GPSGATPQPPGVDLPSPSRPEKKKADIVFLLDGSINFRRDSFQEVLRFASEIVDTVYE
                     DGDSIRVGLVQYNSDPTDEFFLRDFSTKRQIIDAINKVVYKGGRHANTRVGIEHLLRN
                     HFVPEAGSRLDERVPQIAFVITGGKSVEDAQDVSLALTQKGVKVFAVGVRNIDSEEVG
                     KIASNSATAFRVGSVQELSELSETVLETLHDAMHETLCPGVTDVSKACNLEVILGFDG
                     SRDQNVFVSQKGLESKVDIILNRISQIQRISCSGNQLPTVRVSVMANTPSGPVEAFDF
                     AEYQPELFEKFRNMRSQRPYVLTADTLKLYQNKFRQSSPDTVKVVIHFTDGADGDMAD
                     LYRASEELRQAGAQALILVGLERVANLERLMHLEFGRGFMYDRPLRLNLLDLDYELAE
                     QLDNIAEKACCGVPCKCSGERGDRGPIGSIGPKGISGEDGYRGYPGDEGGPGERGPPG
                     VNGTQGFQGCPGQRGVKGSRGFPGEKGELGEIGLDGLDGEEGDKGLPGSSGEKGSPGR
                     RGDKGPKGDKGERGDVGIRGDPGDSGRDSQQRGPKGETGDIGPMGLPGRDGIPGSPGD
                     PGKDGGSGRRGPAGAKGNRGGPGQPGFEGEQGTRGSQGPPGPIGPPGLIGEQGIPGPR
                     GGGGTAGAPGERGRTGPLGRKGEPGEPGPKGSIGNRGPRGETGDDGRDGVGSEGRRGK
                     KGERGFPGYPGPKGTPGEPGADGPPGPKGIRGRRGNSGPPGATGQKGDPGYPGPSGHK
                     GNRGDSVDQCALIQSIRDKCPCCYGPLECPVFPTELAFALDTSEGVTQDTFSRMREVL
                     LGIVGDLTIAESNCPRGARVAVVTYNNEVTTEIRFADSKKKSALLDSIQNLQVALTSK
                     QQSLETAMSFVARNTFKRVRSGFLMRKVAVFFSNKPTRASPQLREAVLKLSDAGITPL
                     FLTSQEDRQLINALQINNTAVGHALVLPARRDLTDFLKNVLTCHVCLDICNIDPSCGF
                     GSWRPSFRDRRAAGSDVDIDLAFILDSSEATTLFQFNEMKKYIGYVIRQLDLSPDPKA
                     SQHFARVAVVQQSTYESVDNASVPPVKVEFSLTDYGAKEKLLDFLSRRMTQLQGTMGL
                     GNAIEYTIENIFESAPNPRDLKIMVLMLTGDMQRQQLEEAQRAILQAKCKGYFFVVLG
                     IGRKVNIKEVYSFASEPNDVFFKFVDKSTELNEEPLMRFGRLLPSFVSSENAFYLPPD
                     LRKQCDWFQGDQPVKNGVKFGHKQINPPHTANSSLTSKVVTTMKPVTTTKPTAIVNLP
                     PAKPAPARPAPAQPVLAKPDPAKPAQARPAPAKPASAKLVPPQPVHVQPAPAQTASVR
                     PAPAKPAPPQPAAAKPVPAKPAVPAQPAPPQPAAAKPVPAKPAVPAQPAPPQPAAAKP
                     VPAKPAVPAQPAAAQPMPAQPVLTKSAAVKPASANKPVAAKPVATNTATATARPALAA
                     KPAAAKPAATRPLAAAIRPVATKPEAPRQQAKPAATKPATTKPLARVSREVQVSEVTE
                     NSARLHWERPEPSSSFFYDLTVTSAHDQSLVLRQNLTVTDRVIGGLLAGQLYHVVVVS
                     YLQSQVRAIYQGSFNTKKTQPPPLQAAHRASSSTINLMVNTEPLFLTKTDICKLSRDA
                     GTCVDFKLLWHYDLESKSCKRFWYGGCGGNENRFHSQEECEKMCSPELTV"
     exon            343..960
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1563
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            1564..2148
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2149..2748
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            2749..3321
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            3322..3924
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            3925..4530
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            4531..5145
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            5146..5745
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            5746..6083
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6084..6162
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6163..6308
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6309..6401
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6402..6455
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6456..6527
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6528..6554
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6555..6599
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6600..6653
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6654..6716
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6717..6782
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6783..6836
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6837..6872
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6873..6935
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6936..6998
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            6999..7061
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7062..7124
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7125..7175
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7176..7211
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7212..7274
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7275..7337
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7338..7370
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7371..7407
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7408..7419
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7420..7913
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            7914..8010
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            8011..8709
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            8710..8812
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            8813..9567
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            9568..9831
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            9832..9930
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            9931..10095
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     exon            10096..10841
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      10816..10821
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /note="hexamer: AATAAA"
     polyA_site      10841
                     /gene="Col6a3"
                     /gene_synonym="Col6a-3"
                     /note="major polyA site"
ORIGIN      
        1 agtttggagt tcagcctttc cccaaaggct gctcagttct ctaggctcca gcttccagcg
       61 aggattgcaa gaggagactg tgtcttctga tcctggatcc tctgttcctt ggtggagaag
      121 ggttgcagga agaaaaggag acttagcaag agagaacact atgcatcctg gtgaagcgtg
      181 attgagttta gaagcccagg gacacgcgtc ttcaggtccg ctcagggttc acacttggtg
      241 cttagacatt caaaatgagg aaacaccggc atctgcccct agtggctgtc tttagccttc
      301 tcctctcagg cattgccacg actcatgccc aacagcatgg agatgtcaaa aacggtgcgg
      361 cggctgacat agtgtttcta gtggattcct cttggagtgc tgggaaggac cgtttcctgc
      421 ttgttcaaga gtttctgtct gatgttgtag agtctttagc tgtgggagac aatgattttc
      481 actttgctct ggtccggctc aacggaaacc cacataccga gttcctgtta aatacatacc
      541 actctaaaca agaagtcctt tctcatattg tgaacatgtc ttacattggg ggaagcaacc
      601 aaactggaaa aggattagaa tacgtaattc acagccacct cactgaggct tccggaagcc
      661 gggctgctga cggagtccct caggttatca tagtattaac tgatggacaa tcggaggatg
      721 gcttcgctct gccctcagcg gaacttaagt ctgcggacgt taatgtgttt gcagtcggag
      781 ttgagggtgc agatgaaaga gccctaggag aagtagcaag cgaaccactc agtatgcatg
      841 ttttcaacct agagaacgtt acctcactgc atggcctagt agggaactta gtgtcctgta
      901 tacactcctc tgtgaatcca gaaagggctg gggacaagga aagccttaaa gacatcacag
      961 cacaagactc agctgacatt attttcctta ttgatggatc acagaacacc ggaaatgcca
     1021 atttcgatgt cattcgagac ttccttgtaa atgtccttga gagactctca gttggaaacc
     1081 agcaggtcca agtgggggtg gtacagtata gcgaggagcc cataaccatg ttctccttga
     1141 atagctaccc ctccaaggct gcagttctgg atgccgtgaa agggctcagc ttggttgggg
     1201 gggagtcggc caatataggc caggctcttg actttgtagt ggagaatcac ttcactcggg
     1261 caggtggcag ccgcgtggag gaaggggtcc cccaggtgct ggtcctcata agtgctgggc
     1321 cttctagtga tgagattcga gattcggtgg tagctctgaa gcaggctagt gtgttctcgt
     1381 ttggcctcgg agcccaggca gcctccaggg cagagcttca gcacatagct accgatgaca
     1441 gcttggtgtt tactgtcccg gaattccgta gctttgggga tctccaggag caaatactgc
     1501 cgtaccttgt tggtgtggcc caaaggcaca ttgtcttgca accaccagct attgtcacac
     1561 aagtcatgga agtcaacaag agggacatag tcttcctggt ggatggttcc tccagcctgg
     1621 ggccatccaa cttcaatgcc atccgagact tcgttaccag agtcatccag aggttggaaa
     1681 ttggacagga cctggttcag gtatcagtgg ctcagtatgc agacactgtc aagcctgagt
     1741 tctatttaaa ttcctatacc aacaaaaggg atgccataac tgctgtacgg aagatgaggg
     1801 ccctgaatgg ctcagccctg tacacgggat cttctctgga ctttgttcga aacaacctct
     1861 tcactagctc agccggccat agggccgctg agggggttcc taagctcctg gtgctgatca
     1921 caggcggtaa gtccctcgat gaagtcagcc agcctgccca ggagctgaag agaggcagca
     1981 tcatggcctt ggccgttggc agcaaggccg ccgatgagga tgagctgaaa gagatcgctt
     2041 tcgactcctc cctggtcttc attcccgctg agttccgccc tgctcccttg caaaacatgc
     2101 tgcccagcct gatggcacct ctcaggactc tcactggaac cacggaagtt cacgtaaaca
     2161 aacgggatat catcttcctt ttggatggct ccgacaacgt tgggaaaaac aatttccctt
     2221 atgtgcgtga ctttgtaacc aacctagtta acagcctcga tgttggaagt gacaatatcc
     2281 gtgttggctt ggtgcagttt agtgacactc cggtcacgga gttctctcta gacacttacc
     2341 agaccaagtc cgagctgctc gctcacctga ggcgcttgca gctcaagggg ggctccggct
     2401 tgaacgcagg ctctgccttg agctatatcc atgccaatca cttcacggag gcaggaggca
     2461 gcaggactcg tgaacacgtg cctcagctgc tgctcctgct catggccggg ccctctgagg
     2521 atgcctattt gcaagctgcc aatgccctgg tgcgctcagg cgtgctgacc ttctgtgtgg
     2581 ggaccaatcg ggcggataag gctgagttag agcatattgc ttttaatccc agcctggtat
     2641 acctcatgga cgatttccgc tccctgccat ctttgcctca acagctgatt cagcccctaa
     2701 ccacatatgt tagtggaggt gtacaggaag ttccactatc ccagccagag agcaagcggg
     2761 acattctttt cctctttgac ggctcagtca atgtcttggg tcagttccct gctgtcagag
     2821 actttctcta caggatcatt gaggaacttg atgtgaagcc ggatgggacc cgggtagcaa
     2881 tagctcagtt cagtgatgac gtcaggctgg agtcccgctt cagtgagcac cagacgaaag
     2941 ctgaaatcct taatctcgtg aagaagatga agctaaaaac aggcaaagcc ctcaacctgg
     3001 gctacgccct ggactacgcg cttaggaaca tctttgtgag gtcggctggc agccgcatcg
     3061 aggataacgt gcagcagttc ctggtgctgc tggttgctgg aaggtcgtca gatgctgtgg
     3121 ccgggcctgc aagctccctg aagcagagag gagtggtacc tttcatcttt caagccaaga
     3181 acgccaaccc cagtgagctg gagcagattg tgctgtcgcc tgcattcatc ctggctgcag
     3241 agtcactccc taagatcgga gacctccaat cacagattgt gagccttctg aaagcagaac
     3301 agggttcagg ccctgtatca ggtgaaaagg atgtggtgtt tctcattgat ggctctgagg
     3361 gtgtccgcag tggcttcccc ctgctaaagg actttgtgca gagggttgtg gagagcttgg
     3421 atgtgggtcc cgaccgtgtg cgtgtggcac tggtgcagta cagtgaccgg accaggccgg
     3481 agttctacct gaattcccac atggaccagc agggtgtcat cagcgccatc cgcaggctga
     3541 cactgctggg cggcccaacc cccaacacag gggcggcact ggagttcgtg ttaaggaaca
     3601 ttctgaccag ttctactggg agcaggatag cagaaggtgt tcctcagctc ctgattgtcc
     3661 tcacagcaga gccatcaggg gatgacgtgc gaggcccttc agtagtcctg aagcagggcg
     3721 gggctgtgcc cattggcatt ggcattggga atgctgacat ctctgaaatg cagaccatct
     3781 ccttcatccc tgactttgct gtggccatcc ccaccttccg ggagcttggg acgatacagc
     3841 aggtcatctc tgagagggtg atccagctta atcgtgagga gctgagctcg ttgaaaccca
     3901 ttttgacgcc ctcaacaggt gcaggtgttg gcagcaagaa agatgtggtc tttctcatcg
     3961 atggatcccg aaatgctggc cctgagttcc agtacatccg taccctgatt gagaggatag
     4021 tcgagtacct ggacataggc tttgacacca cccgggtagc cgtcatccag ttcagtgagg
     4081 actccaagat ggagtttcct ctgaatgccc acttcagcaa ggatgaagta cagaacgctg
     4141 tgcgcaggct gcggcccaag ggtgggagtc aggtctacat cggaaatgcc ctggagtacg
     4201 tgctgaagaa catcttccag aggccactgg ggagccggat agaagagggc gttccgcagt
     4261 tcctagtcct catttcgtct ggaaagtctg atgatgaggt ggacgactca gccgtggaac
     4321 tcaagcagtt cggtgtggcc cctctcacca tagccagaca cacagaccaa gaggagctgg
     4381 tgaagatctc cctaagtcct gagtacgtgt actccgtgag caccttcagg gagctgccca
     4441 gactggagca gaagctgctg acgcccatca ccactctaac ctcacagcag atccatcaga
     4501 tcctggccag tacccgatat cccccttcag tggttgaaag cgatgcggct gacatcgtct
     4561 ttctgattga cagctctgat gccgtcaagc ccgatggcat cgctcatatc cgagactttg
     4621 tcagcaggat cgttcgcaga ctcaacattg gtcccagtaa agtgaggatt ggggtcgtgc
     4681 agtttagcaa tgatgtcttc cctgagttct acctgaagac ccacaagtcc cagagcagtg
     4741 tgcttgaagc catacggcgt ctgaggttca aaggagggtc tcccctaaac actggcagag
     4801 ccctggagtt tgtggcaaga aacctcttcg tgaagtctgc tgggagccgg atagaagatg
     4861 gggtccctca acacctggtc ttattcctgg gtgggaagtc tcaggacgat gtggccaggc
     4921 atgcccaagt cataagctca tcggggattg tgagcttagg aataggagat cggaacattg
     4981 ataggacgga cttgcaaacc atcaccaatg accccaggct ggtcttcaca gttcgggaat
     5041 tcagagagct gcccaacata gaagagaggg tcatgctttc ctttggaccc tctggggcta
     5101 ctcctcagcc tcctggggta gatttacctt ctccttcccg gccagagaag aagaaggccg
     5161 acattgtgtt cctgctggat ggttccatca attttaggag ggacagtttc caggaagtgc
     5221 tccgttttgc atctgaaatc gtggacacgg tctatgaaga cggagattcc atcagagtgg
     5281 gactggtcca gtacaactca gaccccacgg atgaattctt cctgagggac ttttctacca
     5341 aaaggcagat tatcgatgcc atcaacaaag tcgtctataa aggagggagg catgccaaca
     5401 ccagggtggg catcgagcac ctgctgcgga atcactttgt gccggaggct ggtagccgcc
     5461 tggatgagcg ggttcctcag atcgccttcg tgatcaccgg agggaagtca gtggaggatg
     5521 ctcaggatgt gagcctggct ctcacccaga aaggtgtcaa ggtgtttgcc gttggcgtga
     5581 ggaacatcga ctctgaggag gtgggcaaga tagcctccaa cagtgccaca gccttccggg
     5641 tgggcagcgt gcaggaactg tccgaactga gtgagacagt gctcgagact ctgcatgatg
     5701 caatgcatga gaccctctgc cctggtgtga ccgatgtctc caaagcctgc aatctggaag
     5761 tcattctggg gtttgatgga tctcgagatc agaatgtgtt tgtgagtcag aagggccttg
     5821 agtccaaggt ggacatcatc ttgaacagaa tcagccagat acaaaggatc agctgcagtg
     5881 gcaaccagct gcccactgtg agggtatccg tgatggcgaa cacgccctct gggccagtgg
     5941 aggcctttga ctttgccgag tatcagccgg agctgtttga gaagtttcgc aacatgcgca
     6001 gtcagcgccc atacgtcctc acagctgaca cgctgaagtt gtaccagaac aagttcaggc
     6061 agtcgtcgcc tgatactgtg aaggtagtca ttcacttcac ggatggagca gatggagaca
     6121 tggctgactt atacagagca tctgaggaac tccggcaagc aggtgcccaa gccctgatcc
     6181 tggtgggtct tgaacgtgtg gctaacctgg agcggctgat gcatctggag ttcgggcggg
     6241 gcttcatgta tgacaggccc ctgaggctca acctgcttga cttagactat gaactggcag
     6301 agcagcttga caatattgct gagaaagctt gctgtggggt tccatgcaag tgctctggag
     6361 agaggggaga cagagggccc attggcagca ttgggccaaa gggtatctcc ggggaagatg
     6421 gctaccgagg ctacccggga gacgaaggcg gacctggtga gcgaggtcca cctggtgtga
     6481 atggcacaca aggtttccag ggctgtccag gccagagggg agtgaagggt tctcgaggat
     6541 tcccaggaga gaagggtgaa ttgggagaaa tcggcttgga tggtctggat ggtgaagagg
     6601 gagacaaggg gctgcctggt tcttctggag aaaaggggag tcctggaaga aggggtgaca
     6661 aaggacccaa aggagacaaa ggcgagagag gagatgtcgg gattcgaggt gacccgggtg
     6721 actcaggacg ggacagccag cagagaggac ccaaaggaga gacgggagac atcggcccca
     6781 tgggtctccc aggcagagat ggcatccctg gcagcccagg agaccctggg aaggacggtg
     6841 gctctggccg aaggggccct gcaggagcta agggcaacag aggtggtcct ggccagccag
     6901 gcttcgaagg cgagcagggt accagaggct cacagggccc acctggtccc attggtcccc
     6961 caggcctgat tggggaacaa ggaattcccg gacctcgagg aggcggaggt acggctgggg
     7021 ctcctggaga acgtggcaga actggtcctc tggggaggaa gggtgagcca ggagagccag
     7081 ggccgaaggg aagcatcggg aaccgtggac cccgaggaga gacgggagat gacgggagag
     7141 atggggttgg cagtgaagga cgcagaggca aaaaaggaga aagaggcttc cctgggtatc
     7201 cgggaccaaa gggcacccct ggtgagccag gggcagatgg accaccagga cccaaaggca
     7261 tcagaggtcg aaggggaaat tcaggacctc caggggcaac tggacaaaag ggagaccctg
     7321 gttacccagg accatctggt cacaagggca accgaggcga ctccgttgat caatgcgccc
     7381 tcatccagag catcagagac aaatgccctt gctgctacgg gcccctggag tgccctgtat
     7441 tcccaacaga actcgccttt gccctggata cctctgaggg ggtgactcag gacaccttca
     7501 gccggatgcg agaggtgctt ctgggcattg tgggcgatct gaccattgca gagagcaact
     7561 gtccgcgggg tgcccgcgtg gctgtggtca cctataacaa tgaggtgact acagagatcc
     7621 ggtttgctga ctccaagaag aagtctgccc tcttagacag tattcagaac ctccaagtgg
     7681 ccttgacctc taagcagcag agcctggaga ccgcaatgtc attcgtggcc aggaatacat
     7741 tcaaacgtgt gaggagtggc ttcctgatga ggaaagtggc tgttttcttc agcaacaagc
     7801 ccaccagggc atccccccag ctccgagagg ccgtactcaa gctttccgat gcggggatca
     7861 cacccttgtt ccttacaagc caggaggacc gacagctcat caacgctttg cagatcaata
     7921 acacagcagt gggacatgcc ctggttctgc ctgcaaggag ggatctcaca gacttcctga
     7981 agaatgtcct tacctgccat gtttgcttgg acatttgcaa tatcgaccca tcctgtggct
     8041 tcggcagctg gaggccttcc ttcagggacc ggagggcagc aggcagtgat gtggacatag
     8101 acctggcttt catcttggac agctcagagg ctaccacact gttccagttc aatgagatga
     8161 agaaatacat aggctatgtg atcagacagc tggacctgag cccagacccg aaggcttccc
     8221 aacactttgc cagggtggct gttgtgcagc agtcaaccta cgagtctgtg gacaatgcca
     8281 gtgtgccgcc tgtgaaggtg gaattctcac tgacagacta tggtgccaag gaaaagctgt
     8341 tggatttcct tagccggagg atgacccaac ttcagggaac catgggcctg ggcaatgcca
     8401 ttgaatacac tatagagaac atctttgaaa gtgctccaaa cccacgggac ctcaaaatta
     8461 tggtgctgat gttgactggt gacatgcaga ggcagcagct ggaggaggcc cagagagcca
     8521 tcctccaggc caagtgcaag ggttacttct ttgtggttct gggcattggc aggaaggtga
     8581 atatcaagga ggtctacagc tttgccagtg agcccaatga tgtcttcttc aaatttgtgg
     8641 acaaatcaac tgagctcaac gaggagcctc tgatgcgctt tgggaggctg ctcccatcct
     8701 ttgtcagcag tgaaaatgca ttttacctgc ctccagatct caggaaacag tgtgattggt
     8761 tccaagggga ccaaccagtg aagaatggcg tgaagtttgg tcacaaacag ataaaccctc
     8821 cacatactgc taattcaagt cttacatcca aagttgtgac cacaatgaag ccagtgacaa
     8881 cgaccaaacc aacagcaatt gtaaacctgc cacctgctaa gccagcccca gcgaggccag
     8941 cccctgctca gccagttctt gctaagccag accccgcaaa accagcccaa gcaaggccag
     9001 cccctgctaa gccagcttct gctaagttgg tgcctcctca gccagtccat gttcagccag
     9061 cccctgccca gacagcttct gtaagaccag cccccgctaa gccagcccct cctcagccag
     9121 ctgctgctaa gccagtccct gctaagccag cagtccctgc tcagccagcc cctcctcagc
     9181 cagctgctgc taagccagtc cctgctaagc cagcagtccc tgctcagcca gcccctcctc
     9241 agccagctgc tgctaagcca gtccctgcta agccagcagt ccctgctcag ccagccgctg
     9301 ctcaaccaat gcctgctcag ccagtcctta ctaaatcagc cgctgtgaaa ccagcctctg
     9361 ccaacaagcc tgtggcagcc aaacctgtgg ccacgaacac agccacagcc acagccagac
     9421 ctgcattagc agcgaagcct gctgcagcga agcctgcagc aacgagaccc cttgctgctg
     9481 ccataaggcc agttgctacc aagccagagg cccccaggca acaggccaaa ccagctgcca
     9541 ccaagccagc cactactaag cccttggcga gagtgtcccg agaagtccag gtctctgaag
     9601 tcacggagaa cagtgccaga ctccactggg agcggcccga gccttccagc tccttttttt
     9661 atgacctcac tgtaacctcg gcccacgacc agtccttggt tctgagacaa aacctcactg
     9721 tcactgaccg tgtcatcgga ggcctactgg ctggacagct gtaccatgtc gtagtggtct
     9781 cctacctgca gtctcaggtc agggccatct accaaggaag tttcaatacg aagaaaaccc
     9841 agcctccacc tcttcaggca gcacaccgag catccagttc aaccatcaac ctcatggtga
     9901 acacagaacc attgtttctc actaaaacag atatatgtaa gctgtccaga gatgctggga
     9961 cttgtgtgga cttcaagtta ctatggcact atgacctaga gagcaaaagt tgcaagagat
    10021 tctggtatgg aggttgtgga ggcaacgaga acagattcca ctcccaggaa gaatgtgaaa
    10081 agatgtgtag tcctgagtta acagtttgac aagagcctaa gcatggcctt caggcaacac
    10141 gtacctctgg gagaaggagg aggcagccat ttctaactcg tttctataga agccctgggt
    10201 agatgcctca gcacggtgcc ttttcatgct ttgattgaca ctcaacctcg ggaggaaacc
    10261 ctctgcacgt gacctgtcaa tatggtgcta aatgtgtcta tggaccctgc tctccgtctc
    10321 caggcagttc taccgtatac ttggaccctt gggttatagc tagccactgc tggtgtttat
    10381 gtgaacattc ctataaattc aatttccctc tggagttcca cgctacgcct gtgccaggca
    10441 aaccctgtgc ctagaacata gcctggacgt cacagctact ctgtacattt ctgcttggtt
    10501 cattcctctg tagttgcacg gcttagatgg agaaacaaga gtctaacctt ctcatggtcc
    10561 cagttttctg gattagactt cgatcaatat tcttctaaat cctctgacaa atgatctaat
    10621 tagaagaaat cagacctctt tcctgtgtgc attgctggga caaatgcctc cattagaaaa
    10681 ttcaaagaaa gtcataatcg agaatctctt tggtggtcct ctaaggcggg ttgtttttca
    10741 atgttgttgt cttggagctt ggaggtgaaa ttcaatgttt aaaattttta ggaaatttat
    10801 acaaagaaac ttttaaataa agtatattga atgtgccatg aaaaa
//
