LOCUS       NM_001346699            2811 bp    mRNA    linear   ROD 28-JAN-2025
DEFINITION  Mus musculus collagen, type XXVI, alpha 1 (Col26a1), transcript
            variant 2, mRNA.
ACCESSION   NM_001346699 XM_006504361
VERSION     NM_001346699.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2811)
  AUTHORS   Zhu,Z., Zou,Q., Wang,C., Li,D., Yang,Y., Xiao,Y., Jin,Y., Yan,J.,
            Luo,L., Sun,Y. and Liang,X.
  TITLE     Isl Identifies the Extraembryonic Mesodermal/Allantois Progenitors
            and is Required for Placenta Morphogenesis and Vasculature
            Formation
  JOURNAL   Adv Sci (Weinh) 11 (32), e2400238 (2024)
   PUBMED   38923264
REFERENCE   2  (bases 1 to 2811)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   3  (bases 1 to 2811)
  AUTHORS   Lipp,S.N., Jacobson,K.R., Schwaderer,A.L., Hains,D.S. and Calve,S.
  TITLE     FOXD1 is required for 3D patterning of the kidney interstitial
            matrix
  JOURNAL   Dev Dyn 252 (4), 463-482 (2023)
   PUBMED   36335435
REFERENCE   4  (bases 1 to 2811)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2811)
  AUTHORS   Koppes,E., Shaffer,B., Sadovsky,E., Himes,K., Barak,Y., Sadovsky,Y.
            and Chaillet,J.R.
  TITLE     Klf14 is an imprinted transcription factor that regulates placental
            growth
  JOURNAL   Placenta 88, 61-67 (2019)
   PUBMED   31675530
REFERENCE   6  (bases 1 to 2811)
  AUTHORS   Braghetta,P., Ferrari,A., De Gemmis,P., Zanetti,M., Volpin,D.,
            Bonaldo,P. and Bressan,G.M.
  TITLE     Overlapping, complementary and site-specific expression pattern of
            genes of the EMILIN/Multimerin family
  JOURNAL   Matrix Biol 22 (7), 549-556 (2004)
   PUBMED   14996434
REFERENCE   7  (bases 1 to 2811)
  AUTHORS   Sato,K., Yomogida,K., Wada,T., Yorihuzi,T., Nishimune,Y.,
            Hosokawa,N. and Nagata,K.
  TITLE     Type XXVI collagen, a new member of the collagen family, is
            specifically expressed in the testis and ovary
  JOURNAL   J Biol Chem 277 (40), 37678-37684 (2002)
   PUBMED   12145293
REFERENCE   8  (bases 1 to 2811)
  AUTHORS   Leimeister,C., Steidl,C., Schumacher,N., Erhard,S. and Gessler,M.
  TITLE     Developmental expression and biochemical characterization of Emu
            family members
  JOURNAL   Dev Biol 249 (2), 204-218 (2002)
   PUBMED   12221002
REFERENCE   9  (bases 1 to 2811)
  AUTHORS   Kagami,Y. and Furuichi,T.
  TITLE     Investigation of differentially expressed genes during the
            development of mouse cerebellum
  JOURNAL   Brain Res Gene Expr Patterns 1 (1), 39-59 (2001)
   PUBMED   15018818
REFERENCE   10 (bases 1 to 2811)
  AUTHORS   Sutton,V.R., Mickelson,C.A., Tobias,G.H., Hogarth,P.M. and
            McKenzie,I.F.
  TITLE     Identification of two forms of the Ly-6.2 antigen showing
            differential expression
  JOURNAL   Immunogenetics 21 (6), 539-547 (1985)
   PUBMED   3874158
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC147987.5, AK076445.1, AC140232.2 and AK143515.1.
            
            On Oct 26, 2016 this sequence version replaced XM_006504361.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK143515.1, AK076445.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-88                AC147987.5         73050-73137         c
            89-691              AK076445.1         2-604
            692-754             AC140232.2         62599-62661         c
            755-929             AK076445.1         668-842
            930-930             AC140232.2         59236-59236         c
            931-1009            AK076445.1         843-921
            1010-2811           AK143515.1         961-2762
FEATURES             Location/Qualifiers
     source          1..2811
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 76.03 cM"
     gene            1..2811
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /note="collagen, type XXVI, alpha 1"
                     /db_xref="GeneID:140709"
                     /db_xref="MGI:MGI:2155345"
     exon            1..366
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            367..489
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            490..587
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            588..649
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            650..806
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            807..905
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1058
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1142
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1195
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            1196..1231
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1279
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..1364
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     exon            1365..2811
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2789..2794
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /note="hexamer: AATAAA"
     polyA_site      2807
                     /gene="Col26a1"
                     /gene_synonym="9430032K24Rik; Col26a; Emid2; Emu2"
                     /note="major polyA site"
ORIGIN      
        1 ctcgccgaat ttgaaaaggc ggccctggag aggcgtgggc gccccccccc cccaagacga
       61 cttccacctc cgaccctgac ttcacgccat caccggctag ctccctgcgc tccagcctgg
      121 ggcaacaggg tcagtccagc ggtctggggc actcctgatc ggctcccggc tcccgggacc
      181 ctaggtcccc gcgggagagc ggtgcaaaat gaagctggtt ttgctgttac catgggcgtg
      241 ctgctgcttg tgcgggtcgg cgctggccac cggctttctc tacccgttcc cggcagcagc
      301 cttgcagcag cacggctacc cggagcaggg cgccggctcc cccggcaacg gctactcgag
      361 tcgccggcac tggtgccatc acacggtgac aaggacagtg tcctgccagg tgcagaatgg
      421 ctccgagacg gtggtccagc gagtctacca gagctgccgg tggcctgggc cctgtgccaa
      481 cctcgtgagg actctcatta gaccgaccta ccgggtttcc taccgcacgg tgactgcgct
      541 ggagtggagg tgttgcccag gattcaccgg aagcaactgc gaggaagaat gtatgaactg
      601 tacccggctt agcgacatga gtgaacggct gaccacgctg gaggccaagg tcctcttgct
      661 ggaagcagct gagcagcctt caggtccaga caatgacctg ccacccccgc agagcacccc
      721 accaacctgg aacgaggact tcctgccaga cgccattccc atcgcacatc cagggccccg
      781 gaggagaaga cccacaggtc cagctggacc tccaggacag atgggaccac ctggacctgc
      841 aggacctcca ggttccaaag gtgaacaggg ccagacagga gagaagggcc cagtgggacc
      901 tccaggtctc ttgggaccac cggggccacg cgggctccct ggagagatgg ggcgccctgg
      961 tccaccaggc cctcctggcc cagcaggaag tcctggcctc ttgccaaaca ctccccaagg
     1021 cgtcctgtat tccctgcaga caccaacaga caaggagaat ggagactccc agctgaaccc
     1081 tgctgttgta gacacagtgc tgactggcat cccaggtccc cggggtcccc caggcccccc
     1141 tggtccccca ggaccacacg gccccccagg acccccagga gcacctggat cccagggcct
     1201 ggtggatgag cgggttgtgg caaggccatc tggtgagccc agtgtgaagg aagaagagga
     1261 caaagccagc gctgcagagg gagaaggtgt gcagcagctt cgcgaggccc tgaagatcct
     1321 ggcagagagg gtccttatcc ttgagcatat gattggagtc catgatcccc tggcctctcc
     1381 tgagggtggc tctgggcagg atgcagccct gagagccaat ctcaagatga agcgaggagg
     1441 tcctcgacct gacggcatcc tggctgccct gctgggcccc gaccctgcac aaaagagcgc
     1501 agaccaggct ggcgacagga agtaagagtc cctctgtcca gtgcgagccc agtgttacag
     1561 ctgaacagcg ggtgcatcct gaagactccc catgtgggac tgggcatcaa gcagggacca
     1621 ttgtggagga cattgggagc ctggggtccc tggggagaga tggtgcttcc aagggcaggg
     1681 cccagtgctg actagcaccc cgacagagct cttcttttgc ccctgccccc tacctcccac
     1741 tcccgctgga gacggggtct gggtaagctg ggtgagctgg gtgggctagg tggaggtggg
     1801 agaataatca caaccctcaa tggctgagcc cctgctctgt cagggccagg gccagctcag
     1861 gcactttccc tatattgtct catttaatcc ttaaaaggta ggtctgtgct ccccactcag
     1921 cctggggacc gatgtgcaca tggtacacat gacccggatt ctggatgtgg gggcctgggg
     1981 ggtaggtttt aacccagacc tcactgttgt tgaagccatg accctgaggt gtgtggccca
     2041 gaggattcct gaggcagctg ggctgccggg aggcagggcc acctggaaag acatcagggc
     2101 actacaaaat tttgggcctg cctctcttcc tctggtcttc cttagggctg cgggtagggg
     2161 tcagcttcca agaggggagt ttgggactgt gagggaggag ggtctctgag aatgagaaag
     2221 gcgaagagct ttggcgatgc cccctaatgt ctcccagtct tgctgagcct actggtcctt
     2281 atctgccctc ccccatggag aaggaaggac catttaatga gaccatccat ccagaatggg
     2341 acctacaacc tccatcatgg ccactctttc atgaatatct atatcctaat ttgatggaca
     2401 acacaaatcc gtgtccactt aacagagtca gactgcctgt attctaggct tgctaggggc
     2461 cgtggccaca caccttgagg ctggggtcca ggcaggttac acagaagaac tgccccacag
     2521 ccctgaaggc ttctctggct ggtgcttggt ctcttatgac gccctccccc catcctggtg
     2581 ctcctataac tgggccaatg gccctgacac tcagagaaca gaaaacacca ccctcgggta
     2641 tgtctccctg cccagcagga gtgaccatcc ctaaagttct tggtgcttat gcaaggctgt
     2701 gacctgaccc cactgggccc tgtaggctct ctctgagtta ttctctgtct ccaccaggag
     2761 gtgatcagag acctgtgatg ttatttcaaa taaaggtgct ctctccactg t
//
