LOCUS       NM_028518               4189 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus collagen, type XX, alpha 1 (Col20a1), mRNA.
ACCESSION   NM_028518 XM_001473208 XM_914804
VERSION     NM_028518.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4189)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4189)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   3  (bases 1 to 4189)
  AUTHORS   Harrow,J.L., Steward,C.A., Frankish,A., Gilbert,J.G.,
            Gonzalez,J.M., Loveland,J.E., Mudge,J., Sheppard,D., Thomas,M.,
            Trevanion,S. and Wilming,L.G.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
REFERENCE   4  (bases 1 to 4189)
  AUTHORS   Tripathi,P., Wang,Y., Casey,A.M. and Chen,F.
  TITLE     Absence of canonical Smad signaling in ureteral and bladder
            mesenchyme causes ureteropelvic junction obstruction
  JOURNAL   J Am Soc Nephrol 23 (4), 618-628 (2012)
   PUBMED   22282597
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX649560.7 and AL450341.10.
            
            On or before Sep 20, 2009 this sequence version replaced
            XM_914804.1, XM_001473208.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849381,
                              SAMN00849382 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-79                BX649560.7         42244-42322
            80-190              BX649560.7         44729-44839
            191-334             BX649560.7         48143-48286
            335-490             BX649560.7         48562-48717
            491-649             BX649560.7         49909-50067
            650-769             BX649560.7         50586-50705
            770-934             BX649560.7         51169-51333
            935-1087            BX649560.7         52064-52216
            1088-1257           BX649560.7         52391-52560
            1258-1387           BX649560.7         52975-53104
            1388-1533           BX649560.7         54063-54208
            1534-1657           BX649560.7         54294-54417
            1658-1794           BX649560.7         54827-54963
            1795-1924           BX649560.7         55396-55525
            1925-2067           BX649560.7         55742-55884
            2068-2200           BX649560.7         56074-56206
            2201-2349           BX649560.7         56602-56750
            2350-2479           BX649560.7         56923-57052
            2480-2518           BX649560.7         58038-58076
            2519-2657           AL450341.10        2482-2620
            2658-2800           AL450341.10        5842-5984
            2801-2910           AL450341.10        6263-6372
            2911-3069           AL450341.10        6704-6862
            3070-3147           AL450341.10        6933-7010
            3148-3234           AL450341.10        7657-7743
            3235-3288           AL450341.10        8514-8567
            3289-3384           AL450341.10        12204-12299
            3385-3438           AL450341.10        12373-12426
            3439-3492           AL450341.10        12527-12580
            3493-3546           AL450341.10        13007-13060
            3547-3618           AL450341.10        13925-13996
            3619-3654           AL450341.10        14564-14599
            3655-3721           AL450341.10        14680-14746
            3722-3889           AL450341.10        14827-14994
            3890-3967           AL450341.10        15392-15469
            3968-4189           AL450341.10        16456-16677
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 103.53 cM"
     gene            1..4189
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /note="collagen, type XX, alpha 1"
                     /db_xref="GeneID:73368"
                     /db_xref="MGI:MGI:1920618"
     CDS             1..3963
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /note="collagen alpha-1(XX) chain"
                     /codon_start=1
                     /product="collagen alpha-1(XX) chain precursor"
                     /protein_id="NP_082794.1"
                     /db_xref="CCDS:CCDS50844.1"
                     /db_xref="GeneID:73368"
                     /db_xref="MGI:MGI:1920618"
                     /translation="MSLQGSYQHFCLWMFLGTTLALGQGQVSSRLRLAVLPEDQLQMK
                     WREAEGSGLGFLVQVTPMAGDLEQELILTTKTPKATVGGLNPSKSYTLQIFELTDSGP
                     ILLARREFVIEDLKSQSLGRGSRRLAGATLEPTSLPLRGPDSEKTSEPSIAFTLSRDL
                     PILDHPQFQCTPPTPADIIFLVDGSWSIGHNHFQQVKDFLASIITQFAIGPDKVQVGL
                     TQYSGDPQTEWDLNSFQTKEQVLAAVHHLRYKGGNTFTGLALTHVLEQNLKPAAGVRP
                     EAAKVLILVTDGKSQDDVRTAARILKDQDIDVFVVGVKNVDEAELKLLASQPLDITVH
                     NVLDFPQLDTLAPLLSRLICQKIQGRGPVKPAAGTRVLDPLPTPTRLILTHATSSSIH
                     LSWTPALYPPLKYLIVWQPSRGGAPKEVVVEGPVSSMELGNLTSSTEYLVSVLPVYES
                     GVGKSLQGRATTAPLPPPGPLTLAAVTPRTLHVTWPPSAGVTQYLVQYLLATSTGEEQ
                     KREVHVGQPEVLLDGLEPGQDYDVSVQSLRGPEASEVQSIRARTSALGPPRHLTFSDV
                     RYNSTCVSWEAQRPVRLVKVSYISSDGSHSGQTQVPGNLTSATLGPLSSSTMYTVRVT
                     CFYLGGGSSVLTGHVTTQKAPSPGQLSVMELPGDAVKLSWLATALSGVLVYQIKWMPL
                     GEGKAREISVPGTLGTATLPGLMKHVEYEITILAYYRDGTRSDPVSLRYTPSAASRSP
                     PSSLALSSETPNSLQVNWTPPSGHVLHYRLNYTLASGSGPEKSISVPGTRSHAVLRDL
                     MSATKYRVLVSAVYRAGESMAVSATYRTAACPALHPDSSLSGFDLMVAFGLVAKEYAS
                     IRGVAMEPSALGVVPTFTLFKDAQLMRRVSDIYPATLPPEHTIVFLVRLLPETPREAF
                     ALWQMMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEVTFDLQDAKKIFFGSFHKVH
                     IAVGHSKVRLYVDCRKVAERPIGDAGSPPTGGFITLGRLAKARGPRSSSATFQLQMLQ
                     IVCSDTWADKDRCCEIPALRDGETCPAFPSACAYSSETPGPPGPQGPPGLPGRNGPPG
                     QQGHPGPKGEPGPPGQTGPEGPGGQQGSPGTQGRAVQGPMGPPGAKGEKGDQGLSGLQ
                     GLSGQQGIPGKTGLQGPKGMRGLEGPAGLPGPPGPRGFQGLAGARGTNGERGAPGAVG
                     PTGLPGSKGERGEKGEPQSLATIFQLVSQACESAIRTHVLKLNSFLHENARPPMPFMA
                     ETAKLGRPRSIDPGLHNEALLPGDWGHILRPEDQGEPVTISHTSNPRLQEVQTPESLE
                     "
     exon            1..79
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            80..190
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            191..334
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            335..490
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            491..649
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            650..769
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            770..934
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1087
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1088..1257
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1387
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1388..1533
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..1657
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1658..1794
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1795..1924
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1925..2067
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2200
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2349
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2479
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2480..2518
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2519..2657
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2658..2800
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2801..2910
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2911..3069
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3070..3147
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3148..3234
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3235..3288
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3289..3384
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3385..3438
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3439..3492
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3493..3546
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3547..3618
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3619..3654
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3655..3721
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3722..3889
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3890..3967
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3968..4189
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4167..4172
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /note="hexamer: GATAAA"
     polyA_site      4189
                     /gene="Col20a1"
                     /gene_synonym="1700051I12Rik"
                     /note="major polyA site"
ORIGIN      
        1 atgagcctcc aaggctccta ccaacacttc tgcctctgga tgttcttggg caccacgttg
       61 gcactggggc agggacaagt aagtagccgc ctgaggctgg cagtactgcc tgaggaccag
      121 ctgcagatga agtggaggga agcagaggga agtggccttg gcttcttggt gcaggtgaca
      181 cctatggcag gggacttgga gcaggagctg atactgacca ccaagacccc caaggccact
      241 gtgggtggcc tgaacccttc caagagctac accttgcaga tctttgagct cactgactcg
      301 gggcctatcc tgctggcacg aagggagttt gtgattgagg atctgaagag ccaatctttg
      361 ggcagaggca gccggaggct ggctggagcc accctggagc ctacctcctt gcctctgagg
      421 ggcccagact ctgagaaaac atctgagccc agcattgcct ttaccttaag cagggacctg
      481 cccattcttg atcaccccca gttccaatgt acacccccaa cacctgctga tataatcttc
      541 ctggtggacg ggtcctggag catcggccac aaccacttcc agcaggtgaa agacttcctg
      601 gccagcatca tcacacaatt tgcaatagga ccagataaag tccaagtagg tctgacacag
      661 tacagtggag acccccagac cgagtgggac ctgaactcct tccaaaccaa ggagcaagtg
      721 ctagcagctg tacaccacct ccgctacaag ggaggaaaca cattcacagg ccttgctcta
      781 acccatgtgc tggagcagaa cctgaagcca gcagccggtg tccgtccaga ggcagccaaa
      841 gtgttgattc tggtgacaga tggcaagtcc caggatgatg tgcgcacagc tgccaggatc
      901 cttaaggatc aggacattga tgtctttgtt gtgggtgtga agaatgtcga tgaggctgag
      961 ctgaagctcc tggcgtccca gccactggac atcactgtcc acaacgtgct ggacttccct
     1021 cagctggaca ccctagctcc tctgctcagc cgactcattt gccaaaaaat tcagggcaga
     1081 ggcccagtca aaccagcagc aggtactcgg gtcctggacc ccctccccac gcccaccaga
     1141 ctgatcctga cccacgccac ctcatccagt atccacctgt cttggactcc agccttatac
     1201 ccacccctca agtatctaat tgtatggcag ccttctaggg gtggtgcccc caaggaggtg
     1261 gtggtggagg ggcctgtctc atccatggag cttggaaacc tgacctccag cacagaatac
     1321 ttggtctctg tgcttcctgt ctatgagagt ggggttggca agagcctgca aggccgggca
     1381 accacagcac ccctgcctcc acctgggcca ctgaccctag ctgcagtgac acccagaact
     1441 ctccacgtca cctggccgcc ctctgctggg gtcactcagt acttggtgca gtacttgctg
     1501 gctacctcca ctggggagga gcaaaagaga gaggtacatg tgggacagcc tgaggtactg
     1561 ctggatggtc tggagcctgg ccaggactat gatgtctcag tgcagagcct tcggggacca
     1621 gaggccagcg aggtccagag catccgtgcc aggacctctg ccctggggcc cccaagacac
     1681 ctgactttct cagatgttcg ctacaactca acctgtgtgt cctgggaagc ccagaggcct
     1741 gtgcgcctgg tcaaggtcag ctacatctct agtgatggca gccactctgg gcagactcag
     1801 gttcctggga accttacttc agctactctg ggcccacttt cttcctctac catgtacacc
     1861 gtcagagtca cctgttttta ccttgggggt ggttcctccg tgctgactgg ccatgtaacc
     1921 acacagaaag ctcctagccc tggccagctg tctgtgatgg agctcccggg agatgcagta
     1981 aagctgtcat ggctggccac tgccttgtct ggtgtacttg tttatcagat caagtggatg
     2041 cccttgggag aagggaaggc ccgtgagatc tctgtcccag ggacccttgg cacagccacc
     2101 ttgcctggcc tgatgaaaca tgtggaatat gagatcacca tccttgccta ctacagggac
     2161 ggcactcgca gcgaccccgt gtccctccgc tacaccccct ctgcagcaag cagaagcccc
     2221 ccatccagcc tggccttgtc ctcggagacc cccaacagcc tgcaggtcaa ctggacacca
     2281 ccaagtggcc atgtcctcca ttaccggctc aactacacac tggcctcagg ctctggacca
     2341 gagaaatcga tctctgtacc aggcaccagg agccatgccg tgcttcgtga tctgatgtct
     2401 gccacgaagt acagggtcct ggtctcagct gtctacagag caggggagag catggcagtg
     2461 tctgccacat accgcacagc agcctgccca gccctgcacc cggacagttc cctctcaggg
     2521 tttgacctga tggtggcctt tggcctcgtg gcaaaggagt atgcctctat tcgaggagtt
     2581 gccatggagc cctcagcctt gggtgtggtc ccaaccttca ctctcttcaa ggatgctcaa
     2641 ctgatgcgtc gggtcagtga catctaccca gcaaccctgc caccagaaca caccattgtc
     2701 ttccttgtgc gtctactccc tgagacaccc cgggaagcct ttgcactgtg gcagatgatg
     2761 gctgaagatt tccagcccat cctcggggtt ctgctggatg ctggcagaaa gtctctgact
     2821 tacttcaacc atgattcccg ggcagccttg caggaggtca cctttgacct gcaggatgca
     2881 aagaagatct tctttggaag cttccacaag gtacatatag ctgtaggcca ctctaaggtc
     2941 agactctatg tggactgtcg gaaggtggcc gagcgtccca ttggggatgc tggcagccca
     3001 cccacaggtg gtttcatcac actagggagg ctagccaagg ccagagggcc acggagcagc
     3061 tcagccacat tccagctcca gatgttgcaa atcgtgtgca gtgatacctg ggcagacaag
     3121 gacaggtgtt gtgagattcc tgcactgagg gatggagaga cgtgcccggc cttcccttca
     3181 gcctgtgcct actcatctga gacccctggg ccaccagggc cccaaggccc tccgggtctc
     3241 cctggaagga acggccctcc aggacagcag gggcacccag ggcccaaggg ggagccgggc
     3301 ccacctggac aaacaggacc tgaaggccct ggaggtcagc aggggtcacc agggacccag
     3361 ggccgcgcag tccagggacc catggggcca ccaggagcca aaggagagaa gggggatcag
     3421 ggactttcag gcttgcaggg cctctctggc cagcaaggca tccctgggaa aactggccta
     3481 cagggaccaa agggcatgag aggactggag ggacctgctg gcctgccagg accacctggc
     3541 cccagggggt tccagggctt ggcaggggcc aggggcacca atggggagcg aggagcccca
     3601 ggagctgtgg gtcccacagg tctaccaggg tccaaaggtg aacgaggaga gaagggagag
     3661 ccacagtccc ttgccaccat cttccagctg gtgagccagg cctgcgagtc agccatacgg
     3721 acacatgtgc tgaagctgaa ttccttcctc catgagaatg cccgtccccc aatgcccttc
     3781 atggcagaga cagctaagct aggcagaccc agatctatag atcctggatt acacaacgag
     3841 gctctacttc ctggagactg gggacatatc ctccgccctg aggaccaagg tgagcctgtg
     3901 actatcagcc acacaagcaa ccctagactg caggaggtgc agaccccaga atccctggag
     3961 tgagcaggat cttccctccg ccacttcaaa ttgccctggc cttccccagc accatcatcc
     4021 ataattttgt ctcagcacta agaacaactg tgtgctggag gggcagagaa ggaaacccag
     4081 aggaagaccc cgaggtggca ggagctggaa gggaggaggg cggtgctcct ccttcaagcc
     4141 ccttctttgt agcacttcta ggttcagata aacttctgct tgcttgtca
//
