LOCUS       NM_001404352            5225 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus collagen, type XVI, alpha 1 (Col16a1), transcript
            variant 2, mRNA.
ACCESSION   NM_001404352 XM_011240386
VERSION     NM_001404352.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5225)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5225)
  AUTHORS   Zhou,C., Chen,D., Ren,J., Huang,D., Li,R., Luo,H., Guan,C., Cao,Y.
            and Wang,W.
  TITLE     FGF8 and BMP2 mediated dynamic regulation of dental mesenchyme
            proliferation and differentiation via Lhx8/Suv39h1 complex
  JOURNAL   J Cell Mol Med 25 (6), 3051-3062 (2021)
   PUBMED   33580754
REFERENCE   3  (bases 1 to 5225)
  AUTHORS   Shpargel,K.B., Mangini,C.L., Xie,G., Ge,K. and Magnuson,T.
  TITLE     The KMT2D Kabuki syndrome histone methylase controls neural crest
            cell differentiation and facial morphology
  JOURNAL   Development 147 (21) (2020)
   PUBMED   32541010
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 5225)
  AUTHORS   Naba,A., Clauser,K.R., Mani,D.R., Carr,S.A. and Hynes,R.O.
  TITLE     Quantitative proteomic profiling of the extracellular matrix of
            pancreatic islets during the angiogenic switch and insulinoma
            progression
  JOURNAL   Sci Rep 7, 40495 (2017)
   PUBMED   28071719
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5225)
  AUTHORS   Maga,A.M., Navarro,N., Cunningham,M.L. and Cox,T.C.
  TITLE     Quantitative trait loci affecting the 3D skull shape and size in
            mouse and prioritization of candidate genes in-silico
  JOURNAL   Front Physiol 6, 92 (2015)
   PUBMED   25859222
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 5225)
  AUTHORS   Hubert,T., Grimal,S., Ratzinger,S., Mechaly,I., Grassel,S. and
            Fichard-Carroll,A.
  TITLE     Collagen XVI is a neural component of the developing and
            regenerating dorsal root ganglia extracellular matrix
  JOURNAL   Matrix Biol 26 (3), 206-210 (2007)
   PUBMED   17169544
  REMARK    GeneRIF: Data show tha collagen XVI is a neural component of the
            developing and regenerating dorsal root ganglia extracellular
            matrix.
REFERENCE   7  (bases 1 to 5225)
  AUTHORS   Eble,J.A., Kassner,A., Niland,S., Morgelin,M., Grifka,J. and
            Grassel,S.
  TITLE     Collagen XVI harbors an integrin alpha1 beta1 recognition site in
            its C-terminal domains
  JOURNAL   J Biol Chem 281 (35), 25745-25756 (2006)
   PUBMED   16754661
  REMARK    GeneRIF: there is a unique alpha1 beta1 integrin-binding site
            within collagen XVI located close to its C-terminal end
REFERENCE   8  (bases 1 to 5225)
  AUTHORS   Desai,J., Shannon,M.E., Johnson,M.D., Ruff,D.W., Hughes,L.A.,
            Kerley,M.K., Carpenter,D.A., Johnson,D.K., Rinchik,E.M. and
            Culiat,C.T.
  TITLE     Nell1-deficient mice have reduced expression of extracellular
            matrix proteins causing cranial and vertebral defects
  JOURNAL   Hum Mol Genet 15 (8), 1329-1341 (2006)
   PUBMED   16537572
REFERENCE   9  (bases 1 to 5225)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   10 (bases 1 to 5225)
  AUTHORS   Lai,C.H. and Chu,M.L.
  TITLE     Tissue distribution and developmental expression of type XVI
            collagen in the mouse
  JOURNAL   Tissue Cell 28 (2), 155-164 (1996)
   PUBMED   8650669
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL606925.16.
            
            On Apr 9, 2022 this sequence version replaced XM_011240386.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219381.220488.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-209               AL606925.16        13269-13477
            210-316             AL606925.16        15027-15133
            317-391             AL606925.16        17049-17123
            392-509             AL606925.16        17211-17328
            510-633             AL606925.16        18246-18369
            634-900             AL606925.16        18648-18914
            901-981             AL606925.16        19540-19620
            982-1107            AL606925.16        19743-19868
            1108-1161           AL606925.16        20531-20584
            1162-1188           AL606925.16        20861-20887
            1189-1224           AL606925.16        21384-21419
            1225-1251           AL606925.16        22337-22363
            1252-1314           AL606925.16        23387-23449
            1315-1356           AL606925.16        23691-23732
            1357-1401           AL606925.16        23820-23864
            1402-1437           AL606925.16        23945-23980
            1438-1500           AL606925.16        24351-24413
            1501-1545           AL606925.16        24704-24748
            1546-1641           AL606925.16        24836-24931
            1642-1680           AL606925.16        25126-25164
            1681-1725           AL606925.16        25618-25662
            1726-1761           AL606925.16        25842-25877
            1762-1872           AL606925.16        26268-26378
            1873-1908           AL606925.16        26739-26774
            1909-1944           AL606925.16        26996-27031
            1945-2028           AL606925.16        27106-27189
            2029-2073           AL606925.16        27451-27495
            2074-2109           AL606925.16        30258-30293
            2110-2154           AL606925.16        30434-30478
            2155-2286           AL606925.16        30768-30899
            2287-2322           AL606925.16        31575-31610
            2323-2430           AL606925.16        32000-32107
            2431-2553           AL606925.16        32387-32509
            2554-2607           AL606925.16        32613-32666
            2608-2649           AL606925.16        32880-32921
            2650-2685           AL606925.16        33756-33791
            2686-2739           AL606925.16        33877-33930
            2740-2808           AL606925.16        34079-34147
            2809-2835           AL606925.16        37649-37675
            2836-2895           AL606925.16        38220-38279
            2896-2943           AL606925.16        38463-38510
            2944-2997           AL606925.16        38634-38687
            2998-3051           AL606925.16        42393-42446
            3052-3084           AL606925.16        42614-42646
            3085-3201           AL606925.16        44558-44674
            3202-3243           AL606925.16        44886-44927
            3244-3330           AL606925.16        45025-45111
            3331-3375           AL606925.16        45970-46014
            3376-3420           AL606925.16        46829-46873
            3421-3474           AL606925.16        48516-48569
            3475-3528           AL606925.16        49066-49119
            3529-3582           AL606925.16        49662-49715
            3583-3627           AL606925.16        51213-51257
            3628-3681           AL606925.16        51398-51451
            3682-3717           AL606925.16        51613-51648
            3718-3780           AL606925.16        51884-51946
            3781-3852           AL606925.16        54016-54087
            3853-3906           AL606925.16        54266-54319
            3907-3951           AL606925.16        54906-54950
            3952-3996           AL606925.16        55131-55175
            3997-4050           AL606925.16        55478-55531
            4051-4104           AL606925.16        55901-55954
            4105-4155           AL606925.16        58125-58175
            4156-4245           AL606925.16        58468-58557
            4246-4281           AL606925.16        59908-59943
            4282-4326           AL606925.16        60937-60981
            4327-4515           AL606925.16        61740-61928
            4516-4582           AL606925.16        62267-62333
            4583-4759           AL606925.16        63189-63365
            4760-4837           AL606925.16        63560-63637
            4838-5225           AL606925.16        64284-64671
FEATURES             Location/Qualifiers
     source          1..5225
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 63.43 cM"
     gene            1..5225
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /note="collagen, type XVI, alpha 1"
                     /db_xref="GeneID:107581"
                     /db_xref="MGI:MGI:1095396"
     exon            1..209
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            210..316
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     CDS             244..5040
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; collagen alpha-1(XVI) chain; procollagen type
                     XVI alpha 1; [a]1 (XVI) collagen"
                     /codon_start=1
                     /product="collagen alpha-1(XVI) chain isoform 2 precursor"
                     /protein_id="NP_001391281.1"
                     /db_xref="GeneID:107581"
                     /db_xref="MGI:MGI:1095396"
                     /translation="MLTSWAPGLWVLGLWATFSHGTNIGERCPTSQQEGLKLEHSSDP
                     STNVTGFNLIRRLNLMKTSAIKKIRNPKGPLILRLGAAPVTQPTRRVFPRGLPEEFAL
                     VLTVLLKKHTFRNTWYLFQVTDANGYPQISLEVNSQERSLELRAQGQDGDFVSCIFPV
                     PQLFDLRWHKLMLSVAGRVASVHVDCVSASSQPLGPRQSIRPGGHVFLGLDAEQGKPV
                     SFDLQQAHIYCDPELVLEEGCCEILPGGCPPETSKSRRDTQSNELIEINPQTEGKVYT
                     RCFCLEEPQNSKVDAQLMGRNIQKAERGTKVHQGTGVNECPPCAHSARESNVTLGPSG
                     LKGGKGERGLTGPSGPKGEKGARGNDCVRVSPDAPLQCVEGPKGEKGESGDLGPPGLP
                     GPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPG
                     PPGLPGPPGIGLPGTPGDPGGPPGPKGEKGSSGIPGKEGPGGKPGKPGVPGTKGEKGD
                     PCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPAPAWEGLGTVGLKGDRGDPGIQGMKGE
                     KGEPCSSCSSGVGAQHLGPSPGHGLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPGS
                     PGPVGPAGIKGAKGEPCEPCTALSELQDGDMRVVHLPGPAGEKGEPGSPGFGLPGKQG
                     KAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGDGCTACPSLQ
                     GALTDVSGLPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGA
                     EGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGAIGPMGPPGAGVSGPPG
                     QKGSRGEKGEPGECSCPSRGEPIFSGMPGAPGLWMGSSSQPGPQGPPGVPGPPGPPGM
                     PGLQGVPGHNGLPGQPGLTAELGSLPIEKHLLKSICGDCAQGQTAHPAFLLEKGEKGD
                     QGIPGVPGFDNCARCFIERERPRAEEARGDNSEGEPGCSGSPGLPGPPGMPGQRGEEG
                     PPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGA
                     MGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQ
                     GFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQG
                     PAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGS
                     SGRPGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPGPPGLSTVGLKGDRGVPGERGLAG
                     LPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGR
                     SGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRF
                     IRQEIIKLFDERMAYYTSRMQFPMEVAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIG
                     REGRQGLPGMRGLPGTKGEKGDIGVGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQG
                     IPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKSMKGPFG"
     exon            317..391
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            392..509
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            510..633
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            634..900
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            901..981
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1107
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1161
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..1188
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1224
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1251
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1252..1314
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1315..1356
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1357..1401
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1437
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1438..1500
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1501..1545
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1641
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1642..1680
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1681..1725
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1726..1761
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1762..1872
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1873..1908
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1909..1944
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            1945..2028
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2029..2073
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2074..2109
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2110..2154
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2155..2286
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2287..2322
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2323..2430
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2431..2553
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2554..2607
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2608..2649
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2650..2685
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2686..2739
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2740..2808
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2809..2835
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2836..2895
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2896..2943
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2944..2997
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            2998..3051
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3052..3084
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3085..3201
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3202..3243
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3244..3330
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3331..3375
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3376..3420
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3421..3474
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3475..3528
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3529..3582
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3583..3627
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3628..3681
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3682..3717
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3718..3780
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3781..3852
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3853..3906
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3907..3951
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3952..3996
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            3997..4050
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4051..4104
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4105..4155
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4156..4245
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4246..4281
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4282..4326
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4327..4515
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4516..4582
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4583..4759
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4760..4837
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     exon            4838..5225
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5177..5182
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /note="hexamer: AAGAAA"
     polyA_site      5225
                     /gene="Col16a1"
                     /gene_synonym="2700007F12Rik; A530052M23Rik; CA1F"
                     /note="major polyA site"
ORIGIN      
        1 agttcctgca agcaggcgtg tgagtgtgcg cgcacgctgc gctgcactca gtctagagaa
       61 ctcaggacgt ggaaaagctg gggtcagcgc agactggcag ggagagatcg aggatcctcc
      121 tgtgggccgt ggacccctgg ccctgcttcc catagctggc agccttaggg ctgccaggat
      181 tgctcagtga agggctccgc gggccgttgg tgccgaggct gcagctgatc tctctggacc
      241 agcatgttga catcctgggc tcccggcctg tgggtgctcg ggctctgggc caccttcagc
      301 catgggacaa atataggtga gcggtgccca acttcacagc aagaaggact caagctagaa
      361 cacagtagtg acccatcaac caacgtgact ggcttcaacc taatccgccg actgaacctc
      421 atgaagacat ctgccatcaa gaagatccgc aaccccaagg ggccactcat cttgaggctg
      481 ggggctgccc cagtgaccca accaactcga cgagtgttcc ctcgaggcct cccagaggag
      541 tttgccctgg tcctgacagt gcttctgaag aaacacacct tccggaacac atggtacttg
      601 ttccaagtga ctgatgcaaa tgggtaccca cagatctcct tggaagtcaa cagccaggag
      661 cggagtctag agctccgggc acagggccaa gatggtgact ttgtgtcctg catcttccca
      721 gtgccccagc tcttcgatct gcgttggcac aagctgatgc tgagcgtggc aggccgtgtg
      781 gcctctgtgc atgtggactg tgtctcagct tcctcccagc ctctgggacc ccggcaatcc
      841 atccggcctg ggggacatgt atttctgggc ttggacgctg agcagggcaa gccggtttca
      901 tttgaccttc agcaggcgca catctactgc gacccggagc tggtgctgga ggaaggctgc
      961 tgtgagatct taccgggagg gtgtccccca gagacctcca agtcacgccg ggacacccag
     1021 agcaatgagc tcattgagat caatcctcag acagagggca aggtctacac ccggtgcttc
     1081 tgcttggagg aacctcagaa cagcaaggtg gacgcgcagc tcatgggaag aaacatccag
     1141 aaagcagaaa gggggacaaa ggtccaccag gggactggag ttaatgagtg cccaccctgt
     1201 gcccacagtg cccgggagag caatgtcaca cttggtccct ctggcctcaa gggagggaaa
     1261 ggcgaacgag gcctgactgg accatcaggc cccaagggag agaagggagc acggggcaat
     1321 gactgtgttc gagtgtcccc tgatgcccca cttcagtgtg tagaaggccc gaaaggagag
     1381 aagggagaat caggggactt gggaccccca ggactcccag gaccaacagg ccagaagggc
     1441 cagaaagggg agaagggtga tggaggcctc aaaggacttc caggaaagcc aggacgagat
     1501 ggtcggccag gagagatctg tgtcattgga cccaaagggc agaaaggaga cccaggcttt
     1561 gttgggcctg agggactggc aggagagcct gggccacctg gcctccctgg accacctggg
     1621 ataggactgc ctgggactcc tggagatcca ggtggcccac caggccctaa gggagaaaag
     1681 ggcagctctg gaataccagg aaaggaaggc ccaggaggga agccggggaa accaggagtg
     1741 ccagggacta agggagagaa gggtgacccc tgtgaagtgt gcccaacgct gcctgaaggg
     1801 tcccagaatt ttgtggggct ccctggaaaa ccagggccta aaggggaacc aggtgatcct
     1861 gctccagcct gggagggcct aggaactgtg ggactgaaag gtgaccgggg agatccaggc
     1921 atccaaggaa tgaaaggaga gaagggggag ccctgctcat cctgtagttc aggggtcgga
     1981 gcccagcatc ttgggccctc tcctggccat ggtttacctg gccttccggg cacatctgga
     2041 attcctgggc caagaggcct gaaaggggag aagggtagtt ttggcgatac aggaccggct
     2101 ggagttccgg gatcaccagg accagtggga ccagctggca tcaaaggggc aaagggggag
     2161 ccctgtgagc cctgcacagc cttgtctgag ctacaagatg gggacatgcg tgtggttcat
     2221 ctgcccggcc cagctggaga gaagggagag cctgggtccc cgggcttcgg gctgcctggg
     2281 aagcagggta aagcaggaga gcgtggactc aaggggcaga agggggatgc tgggaatcca
     2341 ggagaccctg gaacaccagg catcacaggg cagcctggga tatctggaga gcctgggatt
     2401 cgaggtcctg caggaccaaa aggagaaaag ggtgatggat gcactgcctg ccctagcctg
     2461 cagggggcgt tgaccgatgt atcgggactg cctgggaaac ctggccccaa aggagagcca
     2521 ggtccagaag gtgtgggcca tcccggtaaa ccaggccagc ctggtctacc aggagttcaa
     2581 gggcccccag gaccgaaggg cactcaggga gagcctggac ctccaggcac gggtgctgag
     2641 ggaccccagg gggagcctgg aacccagggt ttgcctggca ctcagggcct tcccggacct
     2701 cggggaccac ctggctcagc tggggaaaag ggtgcccagg gatctccggg gcccaaagga
     2761 gccataggac ccatgggacc tcctggtgct ggtgtctcgg ggcctccggg ccaaaaggga
     2821 tcacgaggcg agaaaggtga accgggagag tgttcctgcc cttctcgggg agagcccatc
     2881 ttctcgggca tgccgggtgc tccgggacta tggatgggca gctcctcgca gccgggcccg
     2941 cagggtcccc caggtgtccc cggaccacca ggtccccccg gaatgcctgg attgcaggga
     3001 gtgcctggac acaatggttt gccaggacag cccgggctca ctgccgagct gggatcctta
     3061 cccatcgaga aacacctcct caagagcatc tgtggtgact gtgcccaggg ccagacggct
     3121 catccagcct tccttctgga gaaaggagaa aagggggacc agggcatccc tggcgtgcca
     3181 ggttttgaca actgtgccag gtgcttcata gagagggaac gcccaagagc tgaggaggcc
     3241 aggggagaca acagtgaggg agaacctggc tgttctggga gccctggcct gcctggtcct
     3301 ccagggatgc caggccaaag aggagaagag ggtccacctg gcatgagggg ctctcccggt
     3361 cctccaggcc ctattggccc cccaggtttt cctggtgctg ttggctcccc cggattgccc
     3421 gggcttcaag gggagcgagg cctcacgggc ctgactggag acaaaggaga accgggtcct
     3481 ccaggacaac ctggctaccc aggtgccatg ggccccccag gactgcctgg tatcaaggga
     3541 gagcgaggat acactggccc ctcgggagag aagggcgaat cgggcccacc aggatctgaa
     3601 ggccttccag gtccccaagg tccagcgggt ccccgaggag agcgaggccc ccaggggagc
     3661 tctggagaga agggtgacca gggatttcaa ggccagccag gcttcccagg cccaccgggt
     3721 cctccaggat tcccaggcaa agctggagct cctggcccac ctggccccca agcagagaag
     3781 ggcagtgaag ggattcgagg tccctcaggc ttgcctgggt cccctgggcc acccggccct
     3841 cccgggattc agggccctgc tgggctggac ggactggacg ggaaggacgg caagcctggc
     3901 ctgagggggg acccaggtcc tgctggccct cccggactca tgggacctcc aggcttcaag
     3961 gggaaaacag gtcatcctgg cctccctggg cctaagggtg actgtggaaa acccggtcct
     4021 cctggcagca gtggccggcc aggggcagag ggtgagcccg gtgccatggg accccaggga
     4081 cgaccaggac ccccagggca tcttgggcca cagggtcctc caggccagcc aggtccacct
     4141 gggctctcca ctgtgggcct gaaaggagat cggggagtcc ctggagaaag gggcttggcg
     4201 ggcctcccag gccagcctgg cacacccgga caccctggcc ctccaggtga gcctggttcg
     4261 gacggtgcag ctggcaaaga gggacctcct ggaaagcagg gactctatgg accccctggc
     4321 ccaaagggtg accctggacc tgcaggacag aagggccaag caggagaaaa gggaagatct
     4381 ggcatgccag ggggtcctgg caagagcggc tccatgggac ctatcggacc accggggcct
     4441 gcaggagaga gaggtcaccc tgggtcccca gggcctgcag ggaaccctgg attgcctggt
     4501 ttgccgggct ctatgggaga catggtgaat tatgatgata tcaagaggtt tatcagacaa
     4561 gagatcatta aactgtttga tgagaggatg gcttactata cctccaggat gcagttcccc
     4621 atggaggtgg cagcagctcc aggccggcca gggcctccgg ggaaggatgg tgctccaggt
     4681 cggccaggtg ctccagggtc acccgggctc cctggtcaga taggccgaga aggacgccag
     4741 ggtttgccag gaatgagagg actgcctggt accaaaggtg aaaagggaga cattggtgtt
     4801 ggcattgcag gagaaaatgg tctccctggc cctccaggtc ctcaagggcc tccaggttat
     4861 ggcaagatgg gtgcaactgg accaatgggc cagcaaggta ttcctgggat ccctgggccc
     4921 ccgggtccca tgggccagcc agggaaggca ggccactgca acccctcaga ctgctttggg
     4981 gccatgccaa tggagcagca gtacccaccc atgaagagca tgaaggggcc tttcggttga
     5041 aactcccgcc cacactgaga tgaaggactc tactaggaat aaatggccaa agcttacagg
     5101 actctgatgg gttgtgaatg tttgtgctat tcctgtgttt gttgttgttg ttgctgttaa
     5161 tattttttta acaataaaga aaactatttg taaccccact tccatggggt tcccctggtg
     5221 ctgca
//
