LOCUS       XM_006523568            7074 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus collagen, type XI, alpha 2 (Col11a2),
            transcript variant X8, mRNA.
ACCESSION   XM_006523568
VERSION     XM_006523568.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006523568.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7074
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..7074
                     /gene="Col11a2"
                     /note="collagen, type XI, alpha 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 65
                     ESTs, 113 long SRA reads, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 14 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:12815"
                     /db_xref="MGI:MGI:88447"
     CDS             1168..6198
                     /gene="Col11a2"
                     /codon_start=1
                     /product="collagen alpha-2(XI) chain isoform X8"
                     /protein_id="XP_006523631.1"
                     /db_xref="GeneID:12815"
                     /db_xref="MGI:MGI:88447"
                     /translation="MERCSRCHRLLLFLPLVLGLSAAPGWAGAPSVDVLRALRFPSLP
                     DGVRRSKGVCPGDVAYRVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLT
                     LYSAQGVQQLGLELGRPVRFLYEDQRGRPQASAQPIFRGLSLADGKWHHVAVAVKGQS
                     VTLIVDCKKRVTRPLPRSVHPVLDTHGVVIFGAHILDDEVFEGDVQELLVVPGVQAAY
                     QSCGQKDLECEREQRDGPQTQKPHRAQRSPKKEPARLHKPQSQEPQKQPTESLYYDYE
                     PPYYDVMTTGTAPDYQYPTPGEEEGVLESSPLPFLEEVAHGPRGLKGEKGEPAVLEPG
                     MFVEGPPGPEGPAGLAGPPGIQGNPGPVGDPGERGPPGRAGLPGSDGPPGPPGTSLML
                     PFRFGSSGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLK
                     GESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGEPGMKGDRGFDGLPGLPG
                     EKGQRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGV
                     RGMDGPHGPKGSLGPQGEPGPPGQQGTPGAQGLPGPQGAIGPHGEKGARGKPGLPGMP
                     GSDGLPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGEDG
                     FPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPTGDPGPTGLMGEKGKLGVPGL
                     PGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKS
                     GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPAGKDGLPGHPGQRGEVGFQG
                     KTGPPGPPGVVGPQGTAGESGPMGERGHSGPPGPPGEQGLPGTSGKEGTKGDPGPPGA
                     PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPAGPPGPAGSPGERGAAGSGGPIGPP
                     GRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVG
                     DPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGF
                     NGPPGPIGLQGLPGPSGEKGETGDGGPMGPPGPPGPRGPAGPNGADGPQGSPGGVGNL
                     GPPGEKGEPGESGSPGVQGEPGVKGPRGERGEKGESGQAGEAGPPGPKGPTGDNGPKG
                     NPGPVGFPGDPGPPGEAGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGP
                     AGTPGPEGRQGEKGAKGDPGAVGAPGKTGPVGPAGLAGKPGPDGLRGLPGSVGQQGRP
                     GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPTGEQGEKGDRGLPGPQG
                     SPGQKGETGIPGASGPIGPGGPPGLPGPSGPKGAKGATGPAGPKGEKGVQGPPGHPGP
                     PGEVIQPLPIQMPKKTRRSVDGSKLIQDEEAVPTGGAPGSPAGLEEIFGSLDSLREEI
                     EQMRRPAGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETC
                     VTPRDDVTQFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGVSQDGPLKLRGAN
                     EDELSPETSPYVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFADLGAPTRRGGVL
                     LGPVCFMG"
ORIGIN      
        1 ccctggatgc tgccacggcc tgaggttccc tgggcctaca gagccggtgc agggtggggg
       61 acacaaggcg tgctttgtcg ggagggggag agggtgtgcc aggttggggg cggggctgcc
      121 cagggaggag ggagagcggc tgcttttcaa aggcgccttg tttgccggtg cccttccagc
      181 gccagcgggc ggcggcgtct tggtcacttc agctttcacc ctggcttcgc cacaggctcc
      241 tggcagaccc ggcactgtgc ccacgcttag gggtgcgctg ctctcagcga taccctccta
      301 gaacggccac gaccctgagt gaccctcttt tgccagacct ttccatcagc atcgcccccc
      361 cccaccccgt accccttttc attctgcttc acctagtcca gtatttttat ctttgggggc
      421 aattagcacg tcacccatct cagctttctc cgttccgcag ggcgacccta cgccccccac
      481 ctttgggtcg ctatctatag ctgggtctat aaacaccccg cccaggactg ctctgtaatt
      541 acatgtggca ggacgaggga ggtaattatg gagagctgat tacgagtggg cgtggaacgg
      601 tcgcccgtag gcccgcccct tctgtcccac tgtgccctga gtccctcccc ggactcttca
      661 taggggctct gggcccccaa gggcagctgc cgtggtgtga aaggactata ggatcataaa
      721 agtgaagggg ctgaagaaga tatattctgt tcccacaaat gccatctgag ggggcacgcg
      781 agctacctaa tccctccagg agtaggggtg taccattcca gggctagcga gtgaggaagg
      841 tttccaaccc tcacactctc ctgcccaggt ggagatcggg gtggggtttc cccttggtgg
      901 ctgtgggcgg gcgtcaggag gcgggagctg gacctagggg cgggggcgag ctggggtctc
      961 tgagctgcca gggtggccag gggcacacag tagcggccac cgaagagcaa gcagcactga
     1021 caagaagagg tgcccccaca acggcacctt gctgcatgga gctgggccac tgaaagctgc
     1081 tgacatcccg gggtcctggt tccgaggctc agctggcttc tgtctgctgt cagcaccagg
     1141 actgcctggg atctggcatt ctgagccatg gagcggtgca gccgctgcca ccgcctcctt
     1201 ctgttcctac ctctggtgct gggtctgagc gctgccccgg gatgggcagg tgctccctct
     1261 gtggatgtgc ttcgtgccct gaggttcccc tcccttcccg atggtgttcg gagatcaaaa
     1321 ggggtctgtc cgggtgatgt ggcttaccgt gtggcacggc ctgcccagct cagcgcaccc
     1381 acgcgccagc tcttcccagg aggctttccc aaagacttct ctctgctgac ggttgtccgg
     1441 acccgccctg gcctccaggc tcccctcttg actctataca gcgcccaggg agtccagcag
     1501 ctgggcttgg agctcggccg ccctgtccgc tttctctatg aggaccagag gggacggcca
     1561 caagcctccg ctcagcccat cttccgaggc ctcagcctag cagatggcaa atggcaccac
     1621 gtggctgtgg ctgtgaaggg tcagtctgtc actctcattg tggactgtaa gaagcgagtt
     1681 acccggcccc ttcccagaag tgtgcatccg gtgttggaca cccacggggt ggtgatcttt
     1741 ggtgcccaca tcctcgacga tgaagtcttt gaaggcgatg ttcaggagct cctcgttgtc
     1801 ccaggcgtcc aagctgccta tcagtcttgt gggcagaagg atctggaatg tgagagagaa
     1861 cagagggacg gccctcagac tcagaagcct cacagagccc agagatctcc aaagaaggaa
     1921 ccagcaagac ttcataagcc acagagccag gagccccaga agcagcccac tgagtctctc
     1981 tactatgact acgaaccccc ctattacgat gtgatgacta cggggacagc ccctgattat
     2041 cagtacccca ccccaggtga agaggaagga gtcctggagt ccagtccctt gccattcctt
     2101 gaagaggttg cccacggacc ccgggggcta aagggagaga agggagagcc tgcagtgctg
     2161 gagcctggta tgtttgtaga gggaccccca ggcccagaag gcccagcggg attagctgga
     2221 ccccctggca tccaggggaa cccaggcccg gttggagacc ccggtgagag gggcccccct
     2281 ggccgagcag ggctccccgg atcagatgga ccccctggtc ctcccggcac atctctgatg
     2341 cttccattcc ggtttggcag tagtgggggt gacaagggcc ccgtggtggc agcccaggag
     2401 gcccaggccc aggcgattct gcagcaggca cggctggcac tccgtgggcc ccctggcccc
     2461 atgggttaca cgggccgccc tggaccattg ggtcagcctg ggagccctgg cttgaaggga
     2521 gaatctggag atctgggccc acagggcccc agaggacctc agggcctcac aggtcctcct
     2581 ggcaaggctg gacgaagggg ccgagcaggt gctgatggag cccgtgggat gccgggagaa
     2641 cctggcatga agggtgaccg aggtttcgac ggacttccag ggctacctgg cgagaaggga
     2701 caaaggggtg atacaggtgc tcagggcctt cctgggcctc ctggtgagga cggagagagg
     2761 ggtgatgatg gagagattgg gccacggggg ctgcctggag agtcgggacc tagaggactc
     2821 cttggcccta aaggcccgcc tggtattcct gggccgccgg gagtccgagg catggacggt
     2881 ccccacggcc ccaaagggag cttgggacct caaggagagc caggacctcc tggacaacag
     2941 ggtactcctg gggcccaggg cctccccgga cctcagggag ccatcggtcc tcatggagag
     3001 aagggtgctc gtgggaaacc aggcctccct ggcatgcctg gatcagatgg actcccgggt
     3061 cacccaggga aggaaggtcc ccctggaacc aaagggaacc agggcccgtc cggaccacag
     3121 ggtcctctag gatacccagg ccctcgaggc gtcaagggtg tggatggaat tcggggcctg
     3181 aagggccaca agggtgaaaa gggcgaggac ggctttcctg ggttcaaagg tgacatagga
     3241 gtgaaaggag acaggggcga ggttggagtc cctggttcca ggggcgaaga cggccctgaa
     3301 gggccaaaag ggcgcactgg acctacagga gaccctggac ccactgggct catgggcgag
     3361 aagggcaagc taggtgttcc tggtctgcct ggctatcctg gacgccaggg ccccaaggga
     3421 tctctgggtt tccctggttt tcctggagcc agtggagaga agggagctcg gggcctgtct
     3481 gggaaatcag gacctcgggg agaacggggc cccacgggtc caaggggtca gcggggacct
     3541 cgaggtgcca ctgggaaatc tggagctaag ggaacatcag gtggtgacgg tccccacggg
     3601 ccacccggag agaggggtct tcctggacct caaggcccca atggatttcc tggccccaaa
     3661 ggccctccgg gccctgcagg gaaggatggg ctgccgggac accccggcca gagaggagaa
     3721 gtgggattcc aaggaaagac cggcccacca ggcccgcccg gagtggtggg acctcaggga
     3781 acagctggag aaagtggtcc catgggagag agaggtcact ctggcccccc aggacctcct
     3841 ggagagcaag gattgcctgg aacatctggg aaagaaggga ccaagggtga ccctggtcct
     3901 cctggggccc cagggaagga tggtcctgct ggtctgagag gcttcccagg agagcgaggc
     3961 cttccaggca ctgctggtgg acccggcttg aaaggaaatg aaggtccagc tggccctcct
     4021 ggccctgcag gctctcctgg cgagcgaggt gcagcaggat cagggggccc cattggtccc
     4081 ccgggacgtc caggcccaca aggtccccct ggagcagcag gagagaaagg cgtaccgggc
     4141 gagaaaggcc ctattggtcc cactggtcgt gatggggtgc agggccccgt ggggcttcct
     4201 ggtcctgcag gacccccagg cgtggctgga gaggatggag acaagggtga agtgggagac
     4261 cctggacaga agggaaccaa aggaaacaag ggtgaacatg gccctcctgg acctcctggt
     4321 cccatcgggc ctgtggggca acctggagct gcgggagctg atggtgagcc tggagctcgg
     4381 ggaccccagg gacactttgg agccaaaggt gatgaaggaa caagagggtt caatggaccc
     4441 ccgggaccca tcggcctaca gggcctgcca ggaccctctg gggagaaagg agaaacagga
     4501 gacggggggc ctatgggacc ccctggccct ccaggacctc gaggccccgc tggacccaat
     4561 ggtgctgatg gcccacaagg ttcccctgga ggtgttggaa acttgggtcc ccctggagaa
     4621 aagggtgaac cgggggagtc agggtctcca ggcgtccagg gcgagccggg cgtcaaggga
     4681 ccacgtggag agcgtggtga gaaaggagag tctgggcagg cgggagaggc tggaccaccg
     4741 gggcccaaag gccctacagg cgacaatggc cccaagggga accctggtcc tgttggcttt
     4801 cctggggacc ctggcccccc tggagaagct ggcccacggg gccaggatgg tgctaaggga
     4861 gaccgaggcg aggatggcga gccaggacaa cctggatccc ctggtcccac cggggagaat
     4921 gggccccctg gaccccttgg aaagcgggga cctgctggca ctcctggtcc agaaggacgg
     4981 caaggagaga agggagctaa gggggaccct ggtgctgtgg gggccccggg aaagacaggc
     5041 cctgtgggtc ctgcaggcct agcaggaaag cccggccccg atggtcttcg ggggctcccg
     5101 ggttcagtgg gtcagcaagg ccgccctgga gccacaggcc aggctgggcc cccaggtcct
     5161 gtgggacccc cagggcttcc tggcctccgg ggtgatgctg gagccaaggg ggaaaagggt
     5221 cacccaggtc tcatcggact gattgggccg actggagagc aaggcgagaa gggcgaccgt
     5281 ggcctccctg gacctcaggg ctcacccgga cagaagggag agacgggtat cccaggagca
     5341 tctggcccca tcggtcctgg agggcctcct ggcctgcctg gaccctctgg ccccaaagga
     5401 gccaaaggag ccacaggccc agctggaccc aagggagaga agggtgtcca gggccctcca
     5461 ggacacccgg gccccccggg agaggtgatc cagccactgc ccatccagat gcccaagaag
     5521 acccgccgtt ccgtggacgg aagcaaactg atacaggatg aggaggctgt gcccactggc
     5581 ggtgctccgg gcagtcctgc ggggctggag gagatctttg gctcactgga ctctctgcgg
     5641 gaggagatcg agcagatgag gaggccggcg gggacccagg acagccctgc tcgcacctgc
     5701 caggacttga agctgtgcca cccggagctt cctgatggag agtactgggt tgaccctaac
     5761 cagggctgtg ctcgggatgc cttccgggtg ttctgcaact tcacagcagg aggggagacg
     5821 tgtgtcacac ccagggatga cgtcacacag ttctcctacg tggactccga gggctcccca
     5881 gtgggcgtgg tccagctcac cttcctgcgg ctgctcagcg tctctgccca ccaggatgtc
     5941 tcctaccctt gctctggagt atcccaggat ggtcccctga aactccgagg ggccaacgag
     6001 gatgagctga gccctgagac cagcccttat gtcaaggagt tcagagatgg ctgtcagacc
     6061 cagcaaggcc ggacggtgtt ggaggtgcgc acgcctgtac tggagcagct gcccgtgctg
     6121 gatgcctcct tcgcagacct gggggccccc acaagacggg gaggggtgct tctggggcct
     6181 gtctgcttca tgggctaggc ctgtctctga cgctgtcaac caaaaccagg tctagctgga
     6241 gtcacacagc acggactcca tgtcacctct cgtgaggatc tctcatcgtc tagagggcct
     6301 tgggccaggc aggcatctca agcctcaagt caggcagcac acggggctgg ggtgaaccag
     6361 ggggtgccgg gatagcccag ggggagggtg gtacctgggc ctccagctct cccacttatg
     6421 acccattaga gagctgagac ctttatttaa aacacttccc tgtcacccca aataagtgga
     6481 agagaaagga cactgtgtat tttgtattta aaaaaataat tatattaatt atttaaagag
     6541 tggaagaaca aagtaacaaa gaagataaag agagaaatgc caaaaatccc agcagatatt
     6601 gggggcaggt gctgcaaggg tgggcgggca gtccatcctc cattcagggt ttccctagtg
     6661 cctgtgggtg tggcttccta aaatgaaccc ctccttcctc tccttccacc tggggcacta
     6721 agaatgctgg aacatggtct cccctgcttc aggactccag ccctctttcc ccagagtcta
     6781 agctctgtga cacatgtgtc cctgggagga atgacctgtt acttaagacc aggccgctcc
     6841 ttgaagggag accagaccag agggctgtgc aggacctgcc tctggcgggt tatggagata
     6901 ctgaagttct gccagtggct ctgagccact gtcctggcca cacctcctca ccttccctga
     6961 ttctggaaag aaagctaagg tctagcctat ggccagaagg gactcccagg acccctctag
     7021 ccctatgccc aacgtccctg ctgactgacg gttaaacaat gtgattgtct cctc
//
