LOCUS       NM_007729               7705 bp    mRNA    linear   ROD 11-FEB-2025
DEFINITION  Mus musculus collagen, type XI, alpha 1 (Col11a1), mRNA.
ACCESSION   NM_007729 XM_621607
VERSION     NM_007729.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 7705)
  AUTHORS   Kaneko,N., Hirai,K., Oshima,M., Yura,K., Hattori,M., Maeda,N. and
            Ohtaka-Maruyama,C.
  TITLE     ADAMTS2 promotes radial migration by activating TGF-beta signaling
            in the developing neocortex
  JOURNAL   EMBO Rep 25 (7), 3090-3115 (2024)
   PUBMED   38871984
REFERENCE   2  (bases 1 to 7705)
  AUTHORS   Ushiki,A., Sheng,R.R., Zhang,Y., Zhao,J., Nobuhara,M., Murray,E.,
            Ruan,X., Rios,J.J., Wise,C.A. and Ahituv,N.
  TITLE     Deletion of Pax1 scoliosis-associated regulatory elements leads to
            a female-biased tail abnormality
  JOURNAL   Cell Rep 43 (3), 113907 (2024)
   PUBMED   38461417
REFERENCE   3  (bases 1 to 7705)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   4  (bases 1 to 7705)
  AUTHORS   Wu,B., Wu,B., Benkaci,S., Shi,L., Lu,P., Park,T., Morrow,B.E.,
            Wang,Y. and Zhou,B.
  TITLE     Crk and Crkl Are Required in the Endocardial Lineage for Heart
            Valve Development
  JOURNAL   J Am Heart Assoc 12 (18), e029683 (2023)
   PUBMED   37702066
REFERENCE   5  (bases 1 to 7705)
  AUTHORS   Zhou,C., Chen,D., Ren,J., Huang,D., Li,R., Luo,H., Guan,C., Cao,Y.
            and Wang,W.
  TITLE     FGF8 and BMP2 mediated dynamic regulation of dental mesenchyme
            proliferation and differentiation via Lhx8/Suv39h1 complex
  JOURNAL   J Cell Mol Med 25 (6), 3051-3062 (2021)
   PUBMED   33580754
REFERENCE   6  (bases 1 to 7705)
  AUTHORS   Cho,H., Yamada,Y. and Yoo,T.J.
  TITLE     Ultrastructural changes of cochlea in mice with hereditary
            chondrodysplasia (cho/cho)
  JOURNAL   Ann N Y Acad Sci 630, 259-261 (1991)
   PUBMED   1952599
REFERENCE   7  (bases 1 to 7705)
  AUTHORS   Seegmiller,R.E., Brown,K. and Chandrasekhar,S.
  TITLE     Histochemical, immunofluorescence, and ultrastructural differences
            in fetal cartilage among three genetically distinct
            chondrodystrophic mice
  JOURNAL   Teratology 38 (6), 579-592 (1988)
   PUBMED   3070812
REFERENCE   8  (bases 1 to 7705)
  AUTHORS   Seegmiller,R.E. and Fraser,F.C.
  TITLE     Mandibular growth retardation as a cause of cleft palate in mice
            homozygous for the chondrodysplasia gene
  JOURNAL   J Embryol Exp Morphol 38, 227-238 (1977)
   PUBMED   886247
REFERENCE   9  (bases 1 to 7705)
  AUTHORS   Seegmiller,R., Ferguson,C.C. and Sheldon,H.
  TITLE     Studies on cartilage. VI. A genetically determined defect in
            tracheal cartilage
  JOURNAL   J Ultrastruct Res 38 (3), 288-301 (1972)
   PUBMED   4110409
REFERENCE   10 (bases 1 to 7705)
  AUTHORS   Seegmiller,R., Fraser,F.C. and Sheldon,H.
  TITLE     A new chondrodystrophic mutant in mice. Electron microscopy of
            normal and abnormal chondrogenesis
  JOURNAL   J Cell Biol 48 (3), 580-593 (1971)
   PUBMED   4100752
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AK140136.1, AK157734.1 and
            AC156386.7.
            
            On Dec 3, 2015 this sequence version replaced NM_007729.2.
            
            Summary: This gene encodes the alpha-1 subunit of type XI collagen,
            one of the low abundance fibrillar collagens that is essential for
            normal embryonic skeletal development and the cohesive properties
            of cartilage. The encoded protein, in association with the alpha-1
            subunit of type II collagen, forms a heterotrimeric type XI
            procollagen that undergoes proteolytic processing. Mice lacking the
            encoded protein develop severe chondrodysplasia and die at birth.
            [provided by RefSeq, Dec 2015].
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK157734.1, BC052161.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               AK140136.1         2-158
            158-1411            AK157734.1         2-1255
            1412-1576           AC156386.7         44419-44583
            1577-5013           AK157734.1         1422-4858
            5014-7705           AK157734.1         4860-7551
FEATURES             Location/Qualifiers
     source          1..7705
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 49.35 cM"
     gene            1..7705
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="collagen, type XI, alpha 1"
                     /db_xref="GeneID:12814"
                     /db_xref="MGI:MGI:88446"
     exon            1..464
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     CDS             362..5776
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="collagen alpha-1(XI) chain; a1(XI) collagen;
                     procollagen, type XI, alpha 1; pro-alpha1(XI) collagen"
                     /codon_start=1
                     /product="collagen alpha-1(XI) chain preproprotein"
                     /protein_id="NP_031755.2"
                     /db_xref="CCDS:CCDS17778.1"
                     /db_xref="GeneID:12814"
                     /db_xref="MGI:MGI:88446"
                     /translation="MEPWSRWKTKRWIWDLTISTLALTFLFQAREVRGAAPVDILKAL
                     DFHNSPVGISKTTGFCTNRKNSKDPDVAYRVTEEAQISAPTKQLFPGGIFPQDFSILF
                     TIKPKKGTQAFLLSLYNEHGIQQLGVEVGRSPVFLFEDHTGKPTPENYPLFSTVNIAD
                     GKWHRVAISVEKKTVTMIVDCKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGD
                     IQQFLITGDPKAAYDYCDHYSPDCDLTSKAAQAQEPHIDEYAPEDIIEYDYEYGETDY
                     KEAESVTEMPTFTEETVAQTEANIVDDFQDYNYGTMEPYQTETPRRVSGSNEPNPVEE
                     GFTEEYLTGEDYDVQRNTSEDILYGNKGVDGRDSDLLVDGDLGEYDFYEYKEYEERTT
                     TSPNEEFGPGVPAETDFTETSINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGL
                     MGPPGLQGPSGLPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTIS
                     AQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSAGAKGESGDPGPQGPRGVQG
                     PPGPTGKPGKRGRPGADGGRGMPGESGSKGDRGFDGLPGLPGDKGHRGERGPQGPPGL
                     PGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGPPGQPGIGGIDGPQGPKGNMGPQ
                     GEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSG
                     EKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGE
                     VGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFP
                     GFPGANGEKGARGIAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPPG
                     ERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGP
                     TGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGIRGFPGER
                     GLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKG
                     APGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGP
                     PGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGLPGPIGLQGLPGPP
                     GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGVVGDKGEPGEAGNPG
                     PPGEAGSGGLKGERGEKGEAGPPGAAGPAGIKGPPGDDGPKGNPGPVGFPGDPGPPGE
                     PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGASGSEGRQGEKGAK
                     GEAGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPG
                     LPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP
                     IGPPGPPGLPGPAGPKGNKGSSGPTGQKGDSGMPGPPGPPGPPGEVIQPLPILSPKKT
                     RRHTESIQGDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQL
                     SHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGS
                     WYSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSAAWYDVLSGSY
                     DKALRFLGSNDEEMSYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMIN
                     DFGDQNQKFGFEVGPACFLG"
     exon            465..632
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            633..846
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            847..1009
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1135
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..1252
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1253..1345
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1600
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1601..1663
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1664..1705
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1706..1768
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1769..1843
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1844..1927
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..1984
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            1985..2038
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2039..2092
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2093..2146
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2147..2200
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2254
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2255..2299
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2300..2353
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2354..2398
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2399..2452
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2453..2497
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2498..2551
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2552..2596
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2597..2650
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2651..2695
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2696..2749
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2750..2857
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2858..2911
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2912..2965
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            2966..3010
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3011..3064
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3065..3109
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3110..3163
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3164..3217
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3218..3271
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3272..3379
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3380..3469
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3470..3523
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3524..3631
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3632..3739
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3740..3793
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3794..3847
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3848..3955
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            3956..4009
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4010..4063
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4064..4117
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4118..4171
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4172..4279
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4280..4333
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4334..4387
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4388..4441
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4442..4495
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4496..4603
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4604..4657
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4658..4711
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4712..4819
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4820..4873
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4874..4909
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4910..4963
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            4964..5213
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            5214..5326
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            5327..5395
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            5396..5629
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     exon            5630..7705
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /inference="alignment:Splign:2.1.0"
     regulatory      6249..6254
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="hexamer: AATAAA"
     polyA_site      6270
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="major polyA site"
     regulatory      6317..6322
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="hexamer: AATAAA"
     polyA_site      6341
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="major polyA site"
     regulatory      7251..7256
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="hexamer: AATAAA"
     polyA_site      7276
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="major polyA site"
     regulatory      7633..7638
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
                     /note="hexamer: ATTAAA"
     polyA_site      7667
                     /gene="Col11a1"
                     /gene_synonym="C530001D20Rik; cho"
ORIGIN      
        1 gcgagcctct tgtccagccc acccacagca tgaagccttt aggggtgctc agtgctttcg
       61 gctttttttc ttgaaaccct tcatctgccc tcagtctgaa ggcagggtca ggcgtaggac
      121 gggtcccggg gtcgcagtct cctgcgggcc accccaaagg gagaggaggg ggcgagagac
      181 aggaaggaag caaaccatca aattggaaaa aaaaaaatta gagccctttg actttttttt
      241 tttttactcc ctttcccttc cggatggctg tgtagcgaac gtaggcgaca ccttggaagg
      301 gacaaagttg gtctgcagtg gcaatttcgt gggttcacag tcgtgagcgt ggggcttgga
      361 gatggagccc tggtccaggt ggaaaacgaa acggtggatc tgggatctca ccatctcaac
      421 cctcgccttg acttttctct tccaagctag agaggtcaga ggagctgctc cagttgatat
      481 actaaaagca ttagattttc acaattctcc agtgggaata tctaaaacaa caggattttg
      541 cacaaacaga aagaattcta aagatccaga tgttgcttat agagttacgg aggaagcaca
      601 aatcagcgcc ccaacaaagc agctatttcc aggaggaatt tttccacaag atttttcaat
      661 actatttaca ataaaaccca aaaaaggaac tcaagctttc ctcttgtccc tctacaatga
      721 acatggcatt cagcaactcg gtgttgaggt tgggagatcg cccgtttttc tatttgaaga
      781 ccacactgga aaacccacac cggaaaacta tcctctcttc tcaacagtta acattgctga
      841 tggcaagtgg caccgggtcg caatcagtgt ggagaagaaa actgtgacaa tgattgttga
      901 ttgtaagaag aaaatcacaa aacccctcga tagaagtgag agatcgatag tcgataccaa
      961 tggaatcatg gtatttggaa caagaatttt agaaacagat gttttccagg gtgatattca
     1021 gcagttcctg atcacaggag accccaaggc agcatacgac tactgtgacc attacagtcc
     1081 agattgtgac ttaacatcca aggctgccca ggctcaggag cctcacattg atgagtatgc
     1141 acctgaggat ataatcgagt atgactatga atatggggag acagactata aagaggctga
     1201 gagtgtaaca gagatgccta cttttactga agaaacagta gcacaaacag aggcaaatat
     1261 tgtggatgat tttcaagact acaactatgg aacaatggaa ccttaccaga ctgagactcc
     1321 taggcgggta tcaggatcga atgagccaaa tccagttgaa gaaggtttta ctgaagaata
     1381 tctaaccgga gaggattatg atgtccagag aaacacttcc gaggatattc tgtacgggaa
     1441 caaaggagta gacggcaggg attctgatct cctggtagat ggagatttag gtgaatatga
     1501 tttttatgaa tacaaagaat atgaagaaag gactacgacc tcccctaatg aagaatttgg
     1561 cccaggtgtc ccagcagaaa ctgatttcac agaaacaagc ataaatggac atggtgcata
     1621 tggagagaaa gggcagaagg gggaaccggc tgtggttgaa cccgggatgc ttgttgaagg
     1681 accacctggg ccagcaggac cagcgggtct tatgggtcct ccagggctac aaggtccttc
     1741 tgggcttccc ggcgaccctg gggatagggg cccaccagga cgtcctggct taccaggggc
     1801 tgatggttta cctggacctc ctggaaccat gctgatgtta ccattccgct atgggggtga
     1861 cggctccaaa ggaccaacaa tctctgcaca ggaagcccaa gctcaggcga ttcttcagca
     1921 ggctcggatt gctctgagag gccctcctgg cccaatgggt cttactggaa gaccaggtcc
     1981 tgtggggggt cctggttcag ctggagccaa aggtgagagt ggggatccag gtcctcaggg
     2041 tcctcgaggt gtccaaggtc ctcctggtcc aacgggaaag cctggaaaga ggggccgtcc
     2101 aggtgctgat ggaggaagag gcatgccagg agaatctggg tctaagggag accgagggtt
     2161 tgatggactt ccaggtctgc ctggtgacaa aggtcacagg ggagaaagag gtccacaagg
     2221 tccacctggc ctccctggcg atgatggaat gaggggagaa gatggggaga tcgggcccag
     2281 gggtcttcca ggtgaagctg gtccaagagg cttgctggga ccaaggggaa ctccaggacc
     2341 ccctgggcag cctggtatcg gaggtataga tggcccccaa ggaccaaaag gaaacatggg
     2401 tccccaaggg gagcctggac caccaggtca gcaaggaaat ccaggacctc aaggacttcc
     2461 tggtccacaa ggcccaattg gccctccagg agaaaaaggg ccacaaggaa aaccagggct
     2521 tgcgggactt cctggtgctg atggacctcc tggtcatcct gggaaagaag gccagtctgg
     2581 agaaaagggt gccctgggtc ctcctggtcc tcaggggcct attggttatc ctggtccccg
     2641 tggagtaaag ggagcagatg gtgtcagagg tctcaagggc tctaaaggcg aaaagggtga
     2701 agatggcttt ccaggattca aaggtgacat gggtcttaaa ggtgacagag gcgaggtggg
     2761 tcaagttggc ccaagaggag aagatggccc tgaaggcccc aaaggccgtg caggcccaac
     2821 tggagaccca ggtccctctg gccaagcagg agagaaggga aaacttgggg ttccaggatt
     2881 gccgggatat ccaggaagac aaggtccaaa gggatccact ggatttcctg gatttccagg
     2941 tgccaacggg gagaaaggtg cccggggaat tgctggcaaa ccaggccccc ggggacagcg
     3001 tggtccaacg ggtcctcgag gttccagagg cgccagaggt cccacgggaa aacctggtcc
     3061 gaagggtact tcaggtggtg atggccctcc tggtcctcca ggcgaaaggg gccctcaagg
     3121 acctcaaggt ccagttggat tccctggacc aaaaggcccc cctggccctg ctgggaaaga
     3181 tgggctacca ggacaccctg ggcagcgtgg tgagactgga tttcaaggca agacaggtcc
     3241 ccctggacca ggaggtgtgg taggaccaca gggaccaact ggtgagactg gtcctatagg
     3301 tgaacgtggc catcccggcc ctcctggtcc tcctggcgag caaggacttc ccggtgctgc
     3361 agggaaagaa ggtgcaaagg gtgatcccgg gcctcaaggt atctcaggaa aagatggacc
     3421 agcaggaata cgcggtttcc caggtgaaag aggccttcct ggagcccagg gtgcacctgg
     3481 gctgaaagga ggagaaggtc cccagggccc acagggtcca gttggctctc ctggagagcg
     3541 aggctcagca ggcacagcag gcccaattgg tttgccagga cgtccaggcc cccagggtcc
     3601 tcctggtcca gctggagaaa aaggtgctcc tggagaaaag ggtccccagg gtcctgcagg
     3661 tagagatggt gtccaaggcc ctgtgggtct cccaggacct gctggtcctg ctggctctcc
     3721 tggagaagat ggagacaagg gtgaaattgg tgaaccaggc caaaagggca gcaaaggtga
     3781 caaaggcgaa aatggtcctc ctggtccccc cggacttcaa ggacctgttg gtgctcctgg
     3841 aatcgctgga ggcgatggtg agccaggtcc ccgaggacag cagggaatgt ttggacaaaa
     3901 aggtgatgag ggcgcacgag gtttcccagg acttcctggc cccataggtc ttcaggggtt
     3961 gccaggccca ccaggtgaaa agggcgaaaa tggagacgtt ggccccatgg gtccaccagg
     4021 tcctcctggc ccacgaggcc ctcaaggtcc caatggagct gatggaccac aaggaccccc
     4081 aggctccatt ggttcagttg gtgttgtggg agacaagggt gaacctggag aagcagggaa
     4141 cccagggccc cctggggaag ctggctctgg tggtctcaaa ggagagagag gagagaaagg
     4201 agaagctggg ccccctggtg ctgcaggtcc tgctggtatt aaggggccac caggtgatga
     4261 tgggcccaag gggaacccgg gacccgttgg gtttcctgga gatcctggtc cacctggaga
     4321 acctggtcct gcagggcaag atggtgttgg aggtgacaag ggtgaagatg gagatccagg
     4381 acaaccaggt ccccctggtc catctggtga agctggccct ccaggtcctc ctgggaagag
     4441 aggtccgcct ggagcttcag gttcagaagg aaggcaagga gaaaaaggtg ctaagggaga
     4501 agctggtgct gaaggacctc ctgggaaaac tggccctgtc ggacctcagg gaccttctgg
     4561 aaagcctggt ccagaaggtc ttcgaggcat ccctggtcct gtgggagaac aaggtctccc
     4621 aggtgctgct ggccaagatg gacctcctgg tcctctggga cctcctggtt tacctggtct
     4681 caaaggtgac cctggatcca agggtgaaaa gggacatcct ggtttaattg gattgattgg
     4741 tcctccagga gaacaagggg aaaaaggtga cagaggactt cctgggactc aaggttctcc
     4801 aggagccaaa ggcgatgggg gcatcccagg tcctgctggt cccataggtc cccctggtcc
     4861 tccaggatta ccaggtcccg ctggcccgaa gggtaacaaa ggatcatctg gacctactgg
     4921 ccagaagggt gacagtggta tgccagggcc tcccgggcct ccaggtcctc ctggagaagt
     4981 gatacagcct ttgcctattt tgtcaccaaa aaagaccaga agacacactg aaagcatcca
     5041 gggtgatgca ggagataata ttcttgacta ctcagatggc atggaggaga tatttggttc
     5101 cctcaattct ctgaaacaag acattgaaca catgaagttt cccatgggca cacagaccaa
     5161 cccagcacga acatgcaaag acctgcaact cagccatccc gacttcccag atggtgaata
     5221 ttggattgat cctaaccaag gttgttcagg tgattccttc aaagtttact gtaatttcac
     5281 agctggtggt gagacatgca tctatccgga taaaaaatct gagggagtaa gaatttcatc
     5341 gtggccaaag gagaaaccag gaagttggta cagtgaattt aagagaggaa aactgctttc
     5401 atatttagat gtggaaggca attccataaa tatggtacaa atgacattcc tgaagctcct
     5461 gactgcctct gcccggcaaa acttcaccta caattgccat cagtcagctg cctggtatga
     5521 cgtattatca ggaagttatg acaaagcact tcgatttctg ggatcaaatg atgaggaaat
     5581 gtcctatgag aacaacccac acatcaaagc tttgtatgat ggctgtgcgt ctcgaaaagg
     5641 ctatgaaaag acagtgattg agatcaatac tccgaaaatt gatcaggtac ccatcattga
     5701 tgtaatgatc aatgattttg gtgatcagaa ccagaagttt ggatttgaag tcggtccagc
     5761 ttgctttctt ggataagatt aggacgaaga ccttatgaaa ccaacaggaa aaaaaatacc
     5821 ttggtgccac caaccatttt acgccacatg caagttttga ataaggacgg tatagaaaac
     5881 gtgcttagga atcgctgttg cctactggag gcacagacag aggaaagagg ttttggtagt
     5941 tatgacgatg taaggtagtg tggcggagat ggcaatgggg ctaattcttg attctcaacc
     6001 ctcatctctc cttttcctat ttggatttcg ttggtgctgt agaaaacaaa aagagagaaa
     6061 aatatatatt catttaaaaa atggtgctca ttcccatcca tcaaagatag agtaaaatta
     6121 tgtttaataa agtgtaatta ttttatgtac agttctacac tgtcatccct gtgtccattt
     6181 ccaaaacttg cacgtgactc tcaatcccac ccagctcaga tttcatgaca attgtggact
     6241 gtgacggcaa taaatatttg tgatacaaaa ctcaagttgt atttctgctg actctaattg
     6301 cctttccttg attaataata aaatgccttt gtatatgttg atgttgaaga cttcagttat
     6361 ttgatgtcac tgacaaattt cacggtggtc aaatctagac tttcaggatc acacaccaat
     6421 cgtcccttct ctgctaaccg taacttgttg cgtttcagcc agaagtatca tgcattttaa
     6481 taattaattc agtgctatac ctcgaatatt ttcttctcag aatccagatt tcaccaaata
     6541 cttgtatata tggggaacaa gaaaagttat atttttggac aggaaagtat gtatgagaaa
     6601 ctgctttaac atccacccag aaaataactt tatgtacaat tatttctcta cgtaatcttc
     6661 ttcattgtcc tcagagtgct tcagtaatgc caactaatac taaagatgga aaataagcaa
     6721 ttatttataa atttgtgcaa tgttaggtta aagcaatgaa ctgttaaagt ggcatagtaa
     6781 taatagtcgc aaatattatt ttacttgccc aacaaataca gttcctttgt tttaaaataa
     6841 ttattttcaa catttgacca acctagtagc taaaaaatac atagggtgag ctgtttcaaa
     6901 agtcatattt gctcaagaca atcaaccctt ctcttttttt ccacttaggt attttctttt
     6961 acataccttg aactagcaat acaattttaa aatcaccaac tgaattttgt atctatttta
     7021 agtaatatat gtaagacttg aaaataaatg ttttattata atttcttata tgaagtgtta
     7081 aattaattga taccagtttc cactggaaca cttatcagct gataatttat ctcaaagaat
     7141 ataatctgta atcttgacat ttaaaaatga acatttgtaa ttcagaattt ctttatttct
     7201 gaaaccaagt ttgtaaatgt cctttggagg aaggagatat gaattttatc aataaatcaa
     7261 gtcttgtcta cctggattgg tcattttctt tcttaaacag gttgcaattc actcttgtgt
     7321 tcaaaagtac ttttgattgt catacttgac catccagaga agaattctgt aacccttgca
     7381 tgttaacatt caaagataag ttctcaaata tacagcatag taaataatgg catacagtat
     7441 ttccaataaa atgataattt atatttaatg tcacaaaatg gtttttagag gtaaaaggtt
     7501 ttacaggtaa aagtctcata cttttgactt tggaactaaa aataatttcc aagcaaatta
     7561 ttaagttttt aaatcacacg cgaaataata ttagtttaca aagttttcat atatgttaat
     7621 ttatctgcat taattaaaga ctttgttgta tattaactta ttccaaatta gttgtctttt
     7681 taatgaaata aatttgactc ctaag
//
