LOCUS       NM_001033318            2884 bp    mRNA    linear   ROD 12-MAY-2024
DEFINITION  Mus musculus component of oligomeric golgi complex 7 (Cog7), mRNA.
ACCESSION   NM_001033318
VERSION     NM_001033318.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2884)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2884)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK154693.1.
            
            On Apr 5, 2007 this sequence version replaced NM_001033318.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK154693.1, AK030709.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2884              AK154693.1         3-2886
FEATURES             Location/Qualifiers
     source          1..2884
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="NOD"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 65.09 cM"
     gene            1..2884
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /note="component of oligomeric golgi complex 7"
                     /db_xref="GeneID:233824"
                     /db_xref="MGI:MGI:2685013"
     exon            1..277
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..2421
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /EC_number="3.2.1.113"
                     /note="COG complex subunit 7"
                     /codon_start=1
                     /product="conserved oligomeric Golgi complex subunit 7"
                     /protein_id="NP_001028490.2"
                     /db_xref="CCDS:CCDS21805.1"
                     /db_xref="GeneID:233824"
                     /db_xref="MGI:MGI:2685013"
                     /translation="MDFSKFLADDFDVKDWINAAFRAGPKDGAAGKADGHAATLVMKL
                     QLFIQEVNHAVEETSLQALQNMPKVLRDVEALKQEASFLKEQMILVKEDIKKFEQDTS
                     QSMQVLVEIDQVKSRMQLAAESLQEADKWSTLSADIEETFKTQDIAVISAKLTGMQNS
                     LMMLVDTPDYSEKCVHLEALKNRLEALASPQIVASFTSQSVDQSKVFVKVFTEIDRMP
                     QLLAYYYKCHKVQLLATWQELCQSDLPLDRQLTGLYDALLGAWHTQTQWATQVFKNPH
                     EVVTVLLIQTLGALVPSLPMCLSAGVERAGPELELTRLLEFYDTTAHFAKGLEMALLP
                     HLQDHNLVKVVELVDAVYGPYKPFQLKYGDMEENNLLIQISAVPLEHGEVIDCVQELS
                     HSVHKLFGLASAAVDRCAKFTNGLGTCGLLTALKSLFAKYVSHFTNALQSIRKKCKLD
                     DIPPNSLFQEDWTAFQNSVRIIATCGELLRQCGDFEQQLANRILSTAGKYLSDSYSPR
                     SLAGFQDSILTDKKSPAKNPWQEYNYLQKDNPAEYASLMEILYTLKEKGSSNHNLLSA
                     SRTALTRLNQQAHQLAFDSVFLRIKQQLLLVSRMDSWNTAGIGETLTDDLPAFSLTPL
                     EYISNIGQYIMSLPLNLEPFVTQEDSALELALHAGKLPFPPEQGDELPELDNMADNWL
                     GSIARATMQTYCDVILQIPEVTPHSTKQLATDIDYLINVMDALGLQPSRTLQNIAALL
                     KAKPEEYRQVSKGLPRRLAATVATMRGVNY"
     exon            278..426
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            427..543
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            544..712
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            713..795
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            796..918
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1117
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1245
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1246..1400
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1401..1517
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1518..1583
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1584..1770
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1771..1911
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1912..1995
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            1996..2110
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            2111..2254
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     exon            2255..2884
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      2884
                     /gene="Cog7"
                     /gene_synonym="5630400E24Rik; Gm167"
                     /note="putative"
ORIGIN      
        1 ttcggcctcg gcgcgagtgc gctgacgggg cggcaagtaa agcttggtgg gtttcgacgg
       61 gtgtcccgaa ggcggtgtcg ctcggcgcca acccggagac cgcgcgccat ggacttctcc
      121 aagttcctgg ctgacgactt cgacgtgaag gactggatta atgcggcctt cagagccggc
      181 cccaaagacg gggcggcggg gaaggcggac ggtcacgcag ccaccctggt aatgaagctg
      241 cagctgttca tccaggaggt gaaccacgcc gtggaggaaa caagtctcca ggccctccag
      301 aacatgccca aagtgctccg tgatgtggaa gccctgaagc aggaggcgtc tttcctgaaa
      361 gagcaaatga ttcttgtcaa agaggacatt aaaaagtttg agcaggacac gtcacagtcc
      421 atgcaggtgc tggtagagat tgaccaggtg aagtccagga tgcagcttgc tgcggaatct
      481 cttcaggaag ctgacaagtg gagcacgctg agtgctgata ttgaggagac cttcaaaact
      541 caagacatag ctgtgatttc tgcaaagctg accggcatgc agaacagctt gatgatgctt
      601 gtggatactc cggactactc tgaaaagtgt gtgcacctgg aggctctgaa gaacagactg
      661 gaggccctgg ccagccccca gatcgtagca tcgttcacct ctcagtctgt ggatcagtct
      721 aaagtgtttg tgaaggtgtt tactgaaatc gaccggatgc cccagctcct tgcatactac
      781 tacaagtgtc acaaggtaca gcttctagca acctggcaag agctgtgtca gagtgacctt
      841 ccactggacc ggcagctcac tggcctctat gatgccctgc ttggcgcgtg gcacacacaa
      901 acccagtggg ccacacaggt tttcaagaac ccccacgagg tggtgacggt gctgctgatt
      961 cagaccctgg gggccttggt gccctccctg cccatgtgcc tcagtgcagg tgtggagaga
     1021 gccggaccgg agctggagct caccagactg ctggagtttt acgacaccac cgcccacttt
     1081 gccaaggggc tggaaatggc gctgctcccc catctccagg accacaacct ggtgaaagtt
     1141 gtggagctgg tggatgctgt gtatggtccc tataaaccct tccagctgaa gtacggtgac
     1201 atggaggaga acaaccttct catacagatc agcgctgtgc ctctggaaca cggggaagtg
     1261 attgactgcg ttcaggagct gagccactct gtgcacaagc tctttggctt ggcatctgca
     1321 gctgttgaca gatgtgccaa attcaccaat ggcctgggga cctgtggact gctgacagcc
     1381 ctgaaatccc tctttgccaa gtatgtgtct cacttcacca acgctctcca gtccattcga
     1441 aagaagtgca agctggatga cattcctccc aactccctgt ttcaggaaga ctggaccgct
     1501 tttcagaatt cggtcaggat catagccacc tgtggagagc tcttgcgcca gtgtggggac
     1561 tttgagcagc agctggcaaa caggatcctg tccacagcgg ggaagtatct gtctgactcc
     1621 tacagccctc ggagcctggc aggttttcag gacagcatct tgacagacaa gaagagccct
     1681 gccaagaacc catggcagga atataattac ctccagaaag ataaccctgc tgaatatgcc
     1741 agtttaatgg aaatacttta taccctcaag gagaagggct ccagtaacca caacctactg
     1801 tctgcgtcac gcacagccct gacccggctg aaccagcagg cccaccagct ggctttcgac
     1861 tcggtcttct tgcgcatcaa acagcagctg ctgctcgttt ccaggatgga tagctggaac
     1921 acagccggca ttggtgaaac cctgacagac gatctgcctg ccttcagcct cacacctctc
     1981 gagtacatca gcaacattgg gcagtacatc atgtccctgc ccctgaatct tgagccattt
     2041 gtgactcaag aggactctgc attagagttg gccttgcatg ctgggaagct gccattccct
     2101 cctgagcaag gggatgaact tcccgagttg gacaacatgg ctgacaattg gctgggctcc
     2161 attgccagag ccactatgca gacctactgt gacgtgatcc tccagatccc ggaggtgacc
     2221 ccgcactcca ccaagcaact ggccaccgac atcgactatc tgatcaacgt gatggacgca
     2281 ctgggcctgc agccatcacg aaccctccag aacattgcgg cgctcttgaa ggccaagcct
     2341 gaggaatata gacaggtcag caaaggcctg ccacgccgcc ttgcagccac ggtggccacc
     2401 atgcgtggtg tgaattattg accaattgtg agaagagtgt ccaggacagg gtacaggact
     2461 ggtgactctc agaatggatt cattctcagt ggtggggcag tgtgtgtgtc tgtgtgtgtg
     2521 tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg agagagagag agagagagag agagagagca
     2581 agagagagtg agagagagag agagagagag agagagagag agagagaact ggaaattagg
     2641 catggtggta tgtgtacata agccaagcat ggtggtacat tggtacatgt ctataatccc
     2701 ttgggaggta ggggcaacag gattactgtg agtgtgatgt catcctggac tagagactca
     2761 gtatctacaa caaaaaggct ataaatgaga agtaatgtat tatttatcag agagaaattt
     2821 tcagatgatt tgtaaaaata accttatctt aaaagtgggc ttaataaaca ccgtgaagtg
     2881 ggtc
//
