LOCUS       NM_026225               2920 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus component of oligomeric golgi complex 6 (Cog6), mRNA.
ACCESSION   NM_026225
VERSION     NM_026225.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2920)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2920)
  AUTHORS   Ingham,N.J., Pearson,S.A., Vancollie,V.E., Rook,V., Lewis,M.A.,
            Chen,J., Buniello,A., Martelletti,E., Preite,L., Lam,C.C.,
            Weiss,F.D., Powis,Z., Suwannarat,P., Lelliott,C.J., Dawson,S.J.,
            White,J.K. and Steel,K.P.
  TITLE     Mouse screen reveals multiple new genes underlying mouse and human
            hearing loss
  JOURNAL   PLoS Biol 17 (4), e3000194 (2019)
   PUBMED   30973865
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2920)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   4  (bases 1 to 2920)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   5  (bases 1 to 2920)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Hara,Y., Nagase,T.,
            Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: I. The complete nucleotide sequences of 100 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 9 (5), 179-188 (2002)
   PUBMED   12465718
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK016663.1 and AK153320.1.
            
            On Nov 15, 2007 this sequence version replaced NM_026225.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK031149.1, AK016663.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                AK016663.1         15-26
            13-2920             AK153320.1         2-2909
FEATURES             Location/Qualifiers
     source          1..2920
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 24.1 cM"
     gene            1..2920
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /note="component of oligomeric golgi complex 6"
                     /db_xref="GeneID:67542"
                     /db_xref="MGI:MGI:1914792"
     exon            1..178
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..1999
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /note="conserved oligomeric Golgi complex protein 6; COG
                     complex subunit 6"
                     /codon_start=1
                     /product="conserved oligomeric Golgi complex subunit 6"
                     /protein_id="NP_080501.2"
                     /db_xref="CCDS:CCDS50905.1"
                     /db_xref="GeneID:67542"
                     /db_xref="MGI:MGI:1914792"
                     /translation="MADASGEVAAVPASGAANGFSNGAGATPAQPNNPLSRKLHKILE
                     TRLENDKEMLEALKALSAFFVENSLRTRRNLRGDIERRSLAINEEFVNIFKDVKEELE
                     SINEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQAENQRLEIRAQVVDAFLAKF
                     QLTSDEMSLLRGTRGGPVTEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALL
                     QETAYERLYRWAQSECRALTQESCDVSAVLSQAMEALQDRPVLYKYTLDEFGTARRST
                     VVRGFIDALTRGGPGGTPRPIEMHSHDPLRYVGDMLAWLHQATASEKEHLEALLKHVT
                     AQGVKENIQEVVGHITEGVCRPLKVRIEQVILAEPGAVLLYKISNLLKFYHHTISGIV
                     GNSAATLLTTIEEMHLLSKKIFFTSLSLHANKLMDKVELPPPDLGPSSALSQTLTLLR
                     DILASHDSSVIPLDARQADFVQVLSCALDPLLQMCTVSASNLGTADMATFMVNSLYMM
                     KTTLALFEFTDRRLEMLQFQIEAHLDTLINEQASYVLTRVGLSYIYNTIQQHRPDQGS
                     LANMPNLDAVALKAAMAQFDRYLSAPDHLLMPQLNSLLSATVKEQIIKQSTELVCRAY
                     AEVHAAVMNPDNAYKDPESILHRSPEQVKTLLS"
     exon            179..322
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            323..394
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            395..453
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            454..565
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            566..648
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            649..719
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            720..813
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            814..942
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1034
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1099
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1191
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1309
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1441
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1442..1609
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..1717
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1718..1771
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1851
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     exon            1852..2920
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2899..2904
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /note="putative"
     polyA_site      2920
                     /gene="Cog6"
                     /gene_synonym="4933405E16Rik; mKIAA1134"
                     /note="putative"
ORIGIN      
        1 ttccgttacg ccgggtctgt cagcgatggc tgacgccagc ggggaggtgg ctgcggtccc
       61 cgcctccggg gccgccaatg gcttcagtaa tggggcaggt gcgacccccg cgcagcccaa
      121 caatccgctg tcgcgtaagc tgcacaagat cctggagaca cggctagaaa atgacaagga
      181 gatgttggaa gctctcaagg ccctttcagc cttttttgtt gaaaatagtt tgcggactcg
      241 aagaaattta cgtggtgata ttgaacgcag aagcttagcc atcaatgagg agtttgtaaa
      301 catcttcaaa gacgtgaagg aggagcttga aagcatcaat gaagatgtac aggccatgag
      361 cagctgttgt caggatatga caagtcgctt acaggcagca aaagaacaga ctcaagattt
      421 aatagtaaag accactaagc tgcaagcgga aaaccaaaga ctagagatta gagcacaggt
      481 tgtggatgcc tttttggcca agttccagct gacttcggat gaaatgagtc tcctccgcgg
      541 tacaagagga ggccccgtta ctgaggactt tttcaaggca ttgggaagag tgaaacagat
      601 tcataatgac gtcaaggttc ttttgcgaac caaccagcag acggcaggtt tggagattat
      661 ggaacagatg gccttgcttc aagaaactgc ttatgaaaga ctttaccggt gggctcaaag
      721 cgagtgcaga gcactgactc aagagtcctg tgatgtgtct gcggtgttat cccaggccat
      781 ggaagccctg caggacaggc ctgtcttata caagtatacc ttagatgaat ttggaacggc
      841 ccgacgaagc actgttgttc gtgggtttat tgatgctctt acaagaggag ggccaggagg
      901 tacacctagg cccattgaaa tgcactccca tgacccgctg aggtatgtgg gagacatgct
      961 ggcatggctc catcaagcta ctgcctctga gaaggaacat ctggaagctc tcttaaagca
     1021 tgtaactgct cagggtgtta aagaaaatat ccaagaagtc gttgggcata tcaccgaggg
     1081 tgtgtgtcgg cctctaaagg ttcgaattga acaagtaata cttgctgaac ctggggcagt
     1141 gttgttatat aaaatttcta acctcctcaa gttttaccac cacaccatca gtggcatcgt
     1201 tggaaatagt gcagctactc tactgacaac aattgaggaa atgcacctgc taagcaaaaa
     1261 aatcttcttc actagcttga gtctccatgc gaataaactg atggacaagg ttgagctccc
     1321 accacctgac ctcggaccca gctctgccct gagtcagacc ctcactttgc tgcgggatat
     1381 tctggcgtcg catgattctt cagtcatccc cttggatgct cggcaggctg actttgtgca
     1441 ggttttgtcc tgtgccctgg atcctctcct ccagatgtgt acagtgtcag ccagcaattt
     1501 aggcacagct gacatggcca cgttcatggt caactcactg tacatgatga agacaaccct
     1561 ggctctgttc gaattcacag acaggcgcct agaaatgctt cagtttcaga ttgaagccca
     1621 tctggacact cttatcaatg agcaagcctc ttatgtttta actagagttg gcttgagcta
     1681 catctacaac actatacagc aacatagacc tgatcagggt tctttagcca atatgcccaa
     1741 cctggatgct gtggcgctga aggctgcaat ggctcagttt gaccgctacc tctcagcccc
     1801 agaccacctc ctgatgccac agctgaattc ccttctcagt gccacagtga aggagcagat
     1861 tataaagcag tctacagagc tcgtctgcag agcctacgcg gaagtgcatg cagccgtgat
     1921 gaatccagac aacgcataca aagatccaga gagcatcctt cataggtcac ctgagcaggt
     1981 gaagacactg ctctcttgat gatgtcgatg gcatttgcag ataattgctg cctggcaatg
     2041 acaccaaggg tggttagggt ttttaatcta tgagtcttta ctttgaagat tgagaattaa
     2101 tagttttcct agtatgcggt tgtaggtcaa tttctttcat tctcagctaa catggaggta
     2161 aatcaatatt gacttgaatc tgtagggagc aatgttctct tgcccattag ctgcctctgc
     2221 atagcagtgt aaaggtcccc gtgatttggg attataaata gaggcataaa gtcagctggg
     2281 agtttcggga ttaagtacga tgacttgtaa gttctgtgta acatctaaac cacagcttta
     2341 ttggcaatga gcgtccgctt atggaaggtc ccgctgcttt cctctaattg aatagcttct
     2401 tgaacctagc ccatgtttct gatcccaaaa taggtgttga tgggtttgat ggggagagaa
     2461 acattcaggc tgttgtccct tcctgcttac tttcatgcct ggtgcaggtt tgtatgtatt
     2521 taaatagaca cttagctgat aggtcggaag agagggaaag acccttcagc aggcttcctg
     2581 tgcagacagc ttcagcctgt tccaggacgg gcaatcgcca tacattgtgc actcagtctg
     2641 tttcctccaa ccccatccta gaaactctgt cttgcactca gagcagaagc aactatgcta
     2701 tccattgtgg tatcaacctg ccgggttggt cagttcaatg aatttatatg gtgtatttat
     2761 caaaacagca taatacaagg caggaactta cattgtacat aatttatttc tactgtgaaa
     2821 aagagattga tgtacttagc actttgtttg ctaagagaaa taaatatttt ttcttgttat
     2881 ctggttttct taatatatat taaactattt ctggagcagc
//
