LOCUS       NM_001163126            2997 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus component of oligomeric golgi complex 5 (Cog5), mRNA.
ACCESSION   NM_001163126
VERSION     NM_001163126.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2997)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2997)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   3  (bases 1 to 2997)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK030656.1, CA316530.1, CA580184.1, CX240209.1 and BM244396.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK030656.1, SRR1660815.148160.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-588               AK030656.1         2-589
            589-1122            CA316530.1         244-777
            1123-1522           CA580184.1         82-481
            1523-1983           AK030656.1         1524-1984
            1984-2484           CX240209.1         124-624
            2485-2997           BM244396.2         1-513               c
FEATURES             Location/Qualifiers
     source          1..2997
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 13.68 cM"
     gene            1..2997
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /note="component of oligomeric golgi complex 5"
                     /db_xref="GeneID:238123"
                     /db_xref="MGI:MGI:2145130"
     exon            1..115
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     CDS             22..2511
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /note="COG complex subunit 5"
                     /codon_start=1
                     /product="conserved oligomeric Golgi complex subunit 5"
                     /protein_id="NP_001156598.1"
                     /db_xref="CCDS:CCDS49046.1"
                     /db_xref="GeneID:238123"
                     /db_xref="MGI:MGI:2145130"
                     /translation="MEGGDSTISVAGRGASGSAVVAATVQAILQDDCYSEFLNEDFDV
                     KTYTSQSIHQAVIAEQLAKLAQGISQLDKELHLQVVARHEDLLAQATGIESLEGVLQM
                     MQTRIGALQGAVDRMKSKIVEPYNKIVARTAQLARLQVACDLLRRIIRILYLSKRLQG
                     QLQGGSREITKAAQSLNELDYLSQGIDLSGIEVIENDLLFIARARLEVENQAKRLLEQ
                     GVETQNPTQVGTALQVFHNLGTLKETVTSVVDGYCAALEDSINNALDVKVLTQPSQSA
                     VRGGPGRAAMPTPGSTAGFRASLWTNMEKLMDHICAACGQVQHLQKVLTKKRDPVSHI
                     CFIEEIIKDGQPEILYMFWNAVTLALSSHFHSATNSSMFLKQAFEGEYPKLLRLYNDL
                     WKRLQQSSQNTQGTFSPSGTPDLCVDLPHMEDDTQDMFRLKRPDYDPEKALKDSLQPY
                     EAAYLSKSLSRLFDPINLVFPPGGRNPPSSDELDGITKTITSELNVAAVDANLTLAVS
                     KNVAKTIQLYAVKSEQLLSTQGDASQVIGPLTEGQKRNVGVVNSLFKLHQSVTKVVAS
                     QSSFSATAEQTIMSALKTIHDLMGNAIQPLLTSVADAIEAIIITMHQEDFSGASSSSG
                     KPDVPCSLYMKELQGFIARVMNDYFKHFECLDFVFDNTEAIAQRAIELFIRNASLIRP
                     LGEGGKLRLAADFAQMELAVGPLCRRVSDLGKSYRMLRSFRPLLFQTSEHVADSPAVG
                     DIIPFSIIIQFLFTRAPAELKSPFQRAEWSHARFSQWLDDHPSEKDRLLLLRGALEAY
                     VQSVRSRDGKEFAPVYPIMVQLLQKAMSALQ"
     exon            116..255
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            256..313
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            314..368
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            369..438
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            439..559
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            560..690
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            691..856
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            857..969
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1047
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1129
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1130..1334
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1496
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1596
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1597..1707
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1708..1770
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1771..1874
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..2112
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            2113..2189
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2316
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            2317..2396
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            2397..2543
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
     exon            2544..2997
                     /gene="Cog5"
                     /gene_synonym="5430405C01Rik; GOLTC1; GTC90"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcaacccgg cacttgccaa catggaaggt ggagacagca caatttccgt agcaggccgt
       61 ggggcttcgg gttccgcagt agtggcggcg accgtgcagg cgatcctgca ggacgactgt
      121 tatagtgaat ttttaaatga agactttgat gtaaaaactt acacttccca atctattcat
      181 caagctgtaa ttgctgagca actagcaaaa cttgcccaag ggatcagtca gctggataaa
      241 gaactacacc tacaggttgt tgcaagacat gaagatttat tggcacaagc aactgggatt
      301 gagtctttgg aaggtgttct tcagatgatg cagacgagaa ttggagctct acagggagct
      361 gttgatagga tgaaatcaaa gattgttgaa ccatacaata aaatagtagc ccgtactgca
      421 caactggcaa gacttcaggt tgcctgtgat ttgcttcgga gaataattcg catcttatat
      481 ctcagtaaga ggctccaggg acaactgcaa ggagggagta gagagataac aaaagctgct
      541 cagagtctca atgaacttga ttatctttct caaggaatag atctttctgg aatagaagta
      601 atagagaatg atctactctt tattgcaaga gctcgacttg aagtggaaaa ccaagctaag
      661 cgtctgctgg agcaaggtgt ggagacccag aatccaactc aggttggaac agctcttcag
      721 gttttccata acctcgggac tttgaaggag actgttacca gtgtcgtgga tggctattgt
      781 gctgctttgg aagacagcat caacaatgca ttggacgtca aagttttgac tcagccttcc
      841 cagtcagctg tgcgaggagg ccctgggcga gccgccatgc caactccagg aagcacagca
      901 ggttttcggg cttccctctg gaccaatatg gaaaaactta tggatcacat ctgtgctgct
      961 tgtggacagg tacaacatct acaaaaagta ttaaccaaga agagagatcc tgtttctcac
     1021 atttgtttca ttgaagaaat aattaaggat ggacagcctg aaattttata catgttttgg
     1081 aatgcagtca ccctggcact ttcttctcac tttcattcag caacaaactc ttctatgttt
     1141 ttgaagcaag catttgaagg tgaataccct aaactcttac gtctttataa tgacttatgg
     1201 aagcgtcttc agcagtccag ccagaatacc caggggactt tcagtccaag tgggactcct
     1261 gacctctgtg tggacctccc acacatggaa gacgacacac aagacatgtt cagactgaaa
     1321 aggccagatt atgatccaga aaaggctttg aaagattcac tgcaaccata tgaggctgct
     1381 tatctctcaa aatccctatc acgcctcttc gatcccatca acttggtttt tcctccggga
     1441 ggacgtaatc ctccttcctc tgatgagctc gatggaatca ctaagactat aacaagtgaa
     1501 ctcaatgtag ctgctgttga tgcaaacctc acattagctg tgtcaaaaaa tgtggcaaag
     1561 accatccagt tatatgctgt gaaatcagaa cagcttctct ctactcaagg agatgcaagc
     1621 caggtgattg gacctctcac ggaaggacag aagagaaatg tgggtgtggt gaactccctg
     1681 tttaagctgc accagtcagt aacaaaggtt gttgccagtc agagctcatt ctcagcaaca
     1741 gccgagcaaa ccataatgtc agccctaaag acaattcacg atcttatggg gaatgccata
     1801 cagcccttgc tgacgtcagt ggcagatgcg atcgaggcca taatcatcac catgcatcag
     1861 gaagattttt ctggggcatc aagcagctca ggaaaacctg atgttccttg ttccctgtac
     1921 atgaaagagc tacaaggttt cattgccaga gttatgaatg actactttaa acactttgaa
     1981 tgcttggatt ttgtttttga caacactgaa gctattgccc aaagagccat tgaacttttt
     2041 atccgcaatg ccagtctcat aagacctctt ggtgaaggtg ggaaactgcg acttgctgct
     2101 gattttgcac agatggagtt ggctgtgggc cccctttgca ggcgagtgtc ggatctggga
     2161 aagtcctatc ggatgctgag gtcatttagg cccctgctct tccagacaag tgaacatgtg
     2221 gccgacagcc ccgcagtggg agacattata ccattcagca tcatcattca gtttctgttc
     2281 acaagagcac cagctgagct gaaatccccc ttccagaggg cagaatggtc tcatgctcgc
     2341 ttctcccagt ggctggatga tcacccatct gaaaaggaca ggctgctcct cctcagggga
     2401 gccctggaag cttatgttca gtcagtgaga agcagggacg gtaaagaatt tgcaccagtt
     2461 tatcccatta tggttcagct gcttcaaaag gctatgtctg ctcttcagtg acttgcagtc
     2521 tccatgaaca gacccgtcca aagaaagcag tgccaaatgg tggatggcca ggaattgcac
     2581 cagcccagat catcatcatc tgacagggag gacatacaga aaatgcctga ctctgactca
     2641 ctgtttgcct gtacagagaa aacagaaact tctgttttgt tatttttaaa agatctttta
     2701 atacctcttt taaactcgag ctttcaaata aatataactt agttgtaaga ttaaggaaag
     2761 taagctttca ctattgaagg actttttttc ttgaagtttt aaatactgtc atctgtaata
     2821 aattttctta aaaatagaaa tacagaatca aatgcatata atgaacaatg aaatattttt
     2881 gtgcatctgt atgttcttca aaacaatctc tcagattggg gaaaggtaat gttttcaacc
     2941 actgtataaa ctttgtagaa gtttgacttc atgaataaac tcaccctttc atgtctt
//
