LOCUS       NM_177025               5207 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus Cobl-like 1 (Cobll1), transcript variant 1, mRNA.
ACCESSION   NM_177025
VERSION     NM_177025.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5207)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 5207)
  AUTHORS   Lewandowski,J.P., Du,F., Zhang,S., Powell,M.B., Falkenstein,K.N.,
            Ji,H. and Vokes,S.A.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
REFERENCE   3  (bases 1 to 5207)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
REFERENCE   4  (bases 1 to 5207)
  AUTHORS   Carroll,E.A., Gerrelli,D., Gasca,S., Berg,E., Beier,D.R., Copp,A.J.
            and Klingensmith,J.
  TITLE     Cordon-bleu is a conserved gene involved in neural tube formation
  JOURNAL   Dev Biol 262 (1), 16-31 (2003)
   PUBMED   14512015
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929132.9, AL935171.9 and AL929129.6.
            
            On May 5, 2018 this sequence version replaced NM_177025.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY308746.1, SRR14995048.2162943.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-429               AL929132.9         8378-8806           c
            430-618             AL935171.9         57557-57745         c
            619-820             AL935171.9         42923-43124         c
            821-1049            AL935171.9         40157-40385         c
            1050-1147           AL935171.9         32786-32883         c
            1148-1372           AL935171.9         32471-32695         c
            1373-1532           AL935171.9         14336-14495         c
            1533-1607           AL935171.9         13590-13664         c
            1608-1721           AL935171.9         12293-12406         c
            1722-1956           AL935171.9         9738-9972           c
            1957-2054           AL935171.9         8647-8744           c
            2055-3811           AL935171.9         4211-5967           c
            3812-3988           AL935171.9         2266-2442           c
            3989-5207           AL929129.6         132475-133693       c
FEATURES             Location/Qualifiers
     source          1..5207
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 38.35 cM"
     gene            1..5207
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /note="Cobl-like 1"
                     /db_xref="GeneID:319876"
                     /db_xref="MGI:MGI:2442894"
     exon            1..429
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             353..4075
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     cordon-bleu protein-like 1; cobl-related 1; cobl-related
                     protein 1"
                     /codon_start=1
                     /product="cordon-bleu protein-like 1 isoform 1"
                     /protein_id="NP_795999.2"
                     /db_xref="CCDS:CCDS16072.1"
                     /db_xref="GeneID:319876"
                     /db_xref="MGI:MGI:2442894"
                     /translation="MDRSVPDPLPRSAPRTPAMQPAGSAGRKTKGKAPLPPAETKGTD
                     VSSAEDPVESTAVVTEQQDNMIDKDIELSVVLPGDILKSTTVHGSKPMMDLLVFLCAQ
                     YHLNPSSHTIDLLSAEENLIKFKPNTPIGMLDVEKVILKPKSLDKKKPTPIIPEKTVR
                     VVINFKKTQKTIVRVSPHAPLQDLAPIICSKCEFDPLHTVLLKDYQAQEPLDLTKSLN
                     DLGLRELYAMDISRESCQISHNPDIVKEKENKGIFSFFQRSKKKREQTASAPATPLVS
                     KHRPSFTRSNTISKPYISNTLPSDAPKKRRAPLPPMPTSQGAAQGQERRASCVERSTS
                     VDDTDKSSSEAIMVRTGSLQLSSTSIGTSSLKRTKRKAPAPPSKTPLAQTDERNSAMA
                     HGLPLEDGIAPDSMLELSSPEGMSTPEGSLGPGFLSQEQCAVPKPPDEISEGPGTPEA
                     AVASLTSGVSSDYSLEEIDEKEELSEASKDPAGSISVKSPDIASASTDMRITVEKDPD
                     SALGISDGETSPSSKGKTQEGRSTEGQGPYHPVVGHIGNEDRVSDSIKDMKTLGPNQE
                     SVQNEIMVCATSTDYVKNRPGKMETTIEGEGEALKKASDMETDRLSGSPACRMDNVKS
                     SRENHLTASPGPDQKLNQPGVEKTKMQDAAIQATPARGTFDGNHEVSNSSDPRADETV
                     QTSDGSISAQHSSASLQDSVNASREFRSQGTSTYVQDRLPEKEPACTYGNNVPLSPVD
                     GSNKNPAASYLKNFPLYRQDSNPKPKPSNEITREYIPKIGMTTYKIVPPKSLEMAKDW
                     ESEAMGRKDDQKMLPVGQRHTIENMTETSMQTEVPATSKSSQQPQPDLKPKPSSGTER
                     HLHRTLSSPTGTETNPPKAPRVTTDTGTIPFAPNLEDINNILESKFRSRASNPQAKPS
                     SFFLQMQKRASGHYVTSAAAKSVHTAPGPAPKEPTIKEVQRDPQLSPEQHPSSLSERT
                     HSAPLPNISKADDDIIQKPAETSPPPVAPKPMTLRAETSPPPVFPKPMTLPAETSPPP
                     VFPKPMTLPAETSLPLVFPKPMTLRAETSPPPVAAKPVALPGSQGTSLNLKTLKTFGA
                     PRPYSSSGPSPFALAVVKRSQSFSKACPESASEGSSALPPAATQDEKTHTVNKPTVGS
                     QHGDGDKQNNPVQNEHSSQVLTPADGPSFTLKRQSSLTFQSSDPEHVRQSLLTAIRSG
                     EAAAKLKRVTVPSNTISVNGKSGLSQSMSIDAQDSR"
     exon            430..618
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            619..820
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            821..1049
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1050..1147
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1372
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1532
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1607
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1721
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1956
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1957..2054
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2055..3811
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3812..3988
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3989..5207
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5172..5177
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      5196
                     /gene="Cobll1"
                     /gene_synonym="1810047P18Rik; Coblr1; D430044D16Rik"
                     /note="major polyA site"
ORIGIN      
        1 agttggtgcg cagcgggccg ctggagccca agcactgcgg gcgtggcgac cgtcccgcgc
       61 ccggtccgct cctcctcctc cttcacagcc cgggctgccg cgcgccgccc cttcgcccgg
      121 gactggctgc gggctgcggc cggggcgggg acctgtagcc gtcgtcgcgg cgccctcggg
      181 cagggaccga ccggcaggtg gaagcgcccc ggggaggcgg ggccgcccct ggctgccgtg
      241 ggtcgaggcg ggctcttggc ccggccgctc ccgccctgac ccgccggcct ctcccaccct
      301 agcagtgacg cgccgcctcc gagcccgagc ccgcgccgcg gccagcagcg cgatggaccg
      361 cagcgtcccg gatcccctac cccgcagcgc gccccgcacc cccgccatgc agcccgcggg
      421 ctccgcaggc aggaaaacaa aagggaaggc gcctcttcct ccggccgaga cgaagggcac
      481 tgatgtctct tctgctgaag accctgtaga atctactgct gtcgtcacag agcaacaaga
      541 caatatgata gataaagata ttgagctctc agtggtcctg ccgggagata tcctcaagtc
      601 tactactgtt catggcagta agccaatgat ggacttgctc gtgttcctct gtgctcagta
      661 tcacttaaat ccgtcaagtc acacaattga tttgctctct gctgaagaga accttatcaa
      721 atttaagcca aacacaccaa taggaatgct ggatgtagag aaggtaattt taaagccaaa
      781 atctctggat aagaaaaagc ctacacctat aatcccagag aaaactgtga gagtagtgat
      841 caactttaag aaaacacaga agaccatagt gagagttagt ccccacgcac cccttcaaga
      901 tcttgctccc atcatatgca gtaaatgtga gtttgatccg ttgcataccg tgctgttgaa
      961 ggattaccag gctcaggagc ccctcgactt gacaaaatct cttaatgact tgggactaag
     1021 agagttatat gccatggata tcagcagaga gtcctgccaa atatcacaca acccggacat
     1081 tgtgaaggag aaagaaaaca aagggatttt cagttttttc caacgcagca agaaaaagcg
     1141 agagcaaact gccagtgctc ctgcgacccc actagtgagc aagcatcgtc catctttcac
     1201 gaggtccaac accatttcca aaccgtacat ttccaatacc ctgccctcgg atgcacccaa
     1261 gaagagacgt gccccactgc caccgatgcc cacatcccag ggtgctgctc aaggccagga
     1321 gagacgagcg tcttgtgtgg agagatccac cagtgtggac gacacagata agagttcctc
     1381 tgaagcgatc atggtgagga caggatcact gcagctcagc agcacgtcga taggaacttc
     1441 atctctgaag agaacgaagc gaaaagcacc tgccccacct tcgaaaaccc ccctggctca
     1501 gactgatgaa aggaactctg caatggctca tggcctacct ttggaagatg ggattgctcc
     1561 agacagcatg ttggaactga gctctcccga gggaatgtcc accccagagg gctcccttgg
     1621 tcccgggttc ctaagccagg agcagtgtgc tgtgcccaag ccgccggatg aaatctctga
     1681 gggccctgga actccagagg cagctgtagc atccttgacc tctggtgtaa gctctgatta
     1741 cagtcttgag gagatagatg aaaaggaaga actcagcgag gcatctaaag atccggctgg
     1801 aagtatttct gtgaagtcgc ctgacattgc ttcagcatcg actgatatga gaattacagt
     1861 ggagaaggat cctgattcag ccctcggcat cagtgatgga gagacctctc caagctccaa
     1921 gggaaaaact caagaaggca gaagcacaga ggggcaaggg ccgtatcatc ctgttgtagg
     1981 ccatataggc aatgaggaca gagtatctga cagtataaaa gacatgaaga cactgggccc
     2041 aaaccaggag agtgttcaaa atgaaatcat ggtctgtgcc acaagcacag attatgtgaa
     2101 aaacagaccg gggaaaatgg aaaccaccat agaaggcgaa ggcgaagctc tgaagaaagc
     2161 cagcgacatg gaaactgata gattgtcagg ctctcctgca tgtagaatgg acaatgttaa
     2221 aagttcgagg gaaaatcatc taacagcatc gccaggacca gatcaaaaat tgaatcaacc
     2281 aggtgtagag aagacgaaaa tgcaggatgc agcaattcag gccacccctg cccgcggcac
     2341 ttttgatggg aatcacgaag tcagtaattc atctgacccc agggctgatg agactgtgca
     2401 gacttcggat ggcagcatat cagctcagca ctcctctgca agtctccagg attctgtaaa
     2461 tgcctcaaga gaattcagga gtcagggcac ctcaacttat gtacaagata gactccctga
     2521 gaaagagcca gcttgtacat atgggaacaa tgtccctttg tcacctgtag atggaagtaa
     2581 taagaatcca gctgcttctt acctaaagaa ctttccactt tataggcaag actccaaccc
     2641 caagccaaaa ccgtcaaatg aaatcacgag agagtatata cctaaaattg gaatgactac
     2701 ttataaaata gtacctccga aatccctgga aatggcgaaa gactgggaat cagaagcaat
     2761 ggggaggaaa gatgaccaaa agatgctccc tgtagggcag aggcatacga ttgagaatat
     2821 gacagaaact tccatgcaaa cagaagtccc tgctacttct aaaagctcac agcagcctca
     2881 gcctgacctt aaaccaaagc ccagctcagg aacagagcgt catttgcaca ggactttgag
     2941 ctcaccaact ggtaccgaga cgaaccctcc caaagcaccc agagtgacta cagacactgg
     3001 caccattcct tttgcgccaa atttggaaga tataaacaat attttggagt caaaatttag
     3061 atcccgagct tcaaatcccc aggccaaacc aagttcattc tttttgcaga tgcaaaagag
     3121 agcatcaggc cactatgtga catctgcagc tgctaagagc gtccacactg cccctgggcc
     3181 tgcccctaaa gagccaacaa tcaaggaggt gcagagggac ccacagcttt ctccagaaca
     3241 gcatccttct tccttaagtg aaaggactca ctctgctccg ctgcccaata tttcaaaagc
     3301 tgatgatgat ataattcaga agcctgccga gacctctcct cctcctgtag ctcccaaacc
     3361 aatgactctt cgtgccgaga cctctcctcc tcctgtattt cccaaaccaa tgactcttcc
     3421 tgctgagacc tctcctcctc ctgtatttcc caaaccaatg actcttcctg ccgagacctc
     3481 tcttcctctt gtatttccca aaccaatgac tcttcgagcc gagacctctc ctcctcctgt
     3541 agctgccaag cctgtggctc tccctggtag tcagggaaca tcactaaacc tgaagacctt
     3601 gaaaacattt ggggccccaa gaccatactc cagttctggc ccctcaccct ttgcccttgc
     3661 tgtggtgaaa aggtcacagt cgttcagtaa ggcatgccca gagtcagcca gtgagggctc
     3721 ctctgccctg cctccagctg ccacacagga tgaaaagaca catacagtaa acaagcctac
     3781 ggtgggctcc caacatggtg atggtgataa gcaaaataat cctgtacaga atgagcacag
     3841 ttctcaagtg ctgactccag ctgatggccc atcgttcacc cttaagagac agagttctct
     3901 aacattccag agctctgacc cagagcacgt acgacagagc ttgctcactg caatccggtc
     3961 tggagaggct gctgccaagt tgaagagagt tactgttcca tcgaatacaa tatctgtgaa
     4021 tgggaagtcg ggcctcagcc agtccatgtc cattgacgcc caggacagtc gctaatatta
     4081 ccctgctgtg acacacttca ccgaccagct ttctgcctac aagaaatatt cacaaatata
     4141 tatttagatg tacattaata tataaatcta ttcaggagta aacatttgta ttatggattt
     4201 aatgccaaaa gaaaaatgaa tagaatctat aatttataat aagttttggc ctttttgtta
     4261 tagctaaata ctgctgcttt agaaatgtta aacaaggtgt aaatgacttg tttttttcca
     4321 atgaagaaca atcactgctt atggtttttt tttttcctta tggatatact gtgcaccatg
     4381 aaacaaaggt gtaaattgag atttatagac atactgtatg acacagaaac aggcaagcac
     4441 agactaacat ttactgcctc agcgttaggc tataattaga aagataattt atagtacggc
     4501 ctttgttgct gaaagacgtg gaagactagt aaatcaaata gataatgttc agttattttt
     4561 attgaagaat cactatgaga cttattttat gtattcttta attacaagtg tcagatctgt
     4621 aggtaacagt tgagtatttt taaatagaac actttaacct ttagaagtaa aattgcacaa
     4681 gaagacttta agatattttc tgtatataat tatgatgttg ttacacagat attgcatatt
     4741 ttctaatgcc agaggcctta aaatatccct gtgaaaatgt tgatacattg tggcagttat
     4801 ttcacttttg ctataaggag gaattgaggg ttagtttatg tccacattca aaactttgaa
     4861 gtcagacatt tgcaaaatcc tgattttttt ttaattaaag aaaatgctaa gttagtcatt
     4921 tatgtatctc agatgctagc catctaaata ataatatata ttttcctgaa agccaaaatc
     4981 gttgagagaa acagtacttg atgtgtcggc ttccagtggc ccagaagttt agaacgtgtt
     5041 agtgtcctgg acttccttaa taattttatt cctcttttat tcaaaagact gctcagacac
     5101 ctgacactga actttttcct aaagctactg gagtatctgt catcctgaca cataggaacc
     5161 tttttccgtt taataaaagc aagttatata tttacagtct gttgttt
//
