LOCUS       XM_011243651            5719 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cordon-bleu WH2 repeat (Cobl), transcript
            variant X1, mRNA.
ACCESSION   XM_011243651
VERSION     XM_011243651.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011243651.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5719
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..5719
                     /gene="Cobl"
                     /note="cordon-bleu WH2 repeat; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 16 ESTs, 158 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 9 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:12808"
                     /db_xref="MGI:MGI:105056"
     CDS             286..4353
                     /gene="Cobl"
                     /codon_start=1
                     /product="protein cordon-bleu isoform X1"
                     /protein_id="XP_011241953.1"
                     /db_xref="GeneID:12808"
                     /db_xref="MGI:MGI:105056"
                     /translation="MDAPRALAAKPPTGRKMKARAPPPPGKPAAQNVHSEQKLPHDAT
                     LGSQQSLVYMKEALQNSTLDITVVLPSGLEKQSVVSGSHAMMDLLVELCLQNHLNPSH
                     HVLEIWSSETQQPLSFKPNTLIGSLNVHTVLLKEKVPEERVKPGLTKAPEKSVRLVVN
                     YLRTQKAVVRVSPEVPLQNILPVICAKCEVNPEHVILLRDNVAGEELELSKSLNELGI
                     KELYAWDNRRVLLTKTQSEPSLSCQEMFRKSSLGNDETDKEKKKFLGFFKANKRSNSK
                     AEHLGLSGADSDEDPAKSASGGDLNGCVTTPNSPSLHSRSLTLGPSLSLGNISGVSMK
                     SDMKKRRAPPPPSPKLLGQDKVSEKASLSSQADLQKKKRRAPAPPPPQQPPPSPVVPN
                     RKEDKEENRKSTVGVGRQVPQKPPRGTARGPPQLVLPPPPPYPPPDTDVTEPVTFPGE
                     GAGSETSELRPKLSLPLGPGSHCSMGGVSQVPAESEETASEDTTEDSGVMSSPSDAIS
                     LDSQQDSMRSKDKWSTDQEDGSDQDLAGTPELGPQKSPSWGKSGSGSSILRTEKATMP
                     TNDDEDLFITGHLHQTLAELDEDLEGMEENYETDTSSLTNSVNGVSNHSLQEAIIPDS
                     GVDDIPVTFIGEVSDEPFDSGLFSSRCNNATTFNTGSIASQRSHLSPSQTEHSQPFVR
                     TSRKEPDPSPPSQDNRKRNQPTLANTSENENPVETDPTVTSLVSKLLIDDPKAKDKGK
                     VHGSSHSEKTQAGHGINSLRVNPRDGKDESSNSAPPPWSHHGQALGGSYGLKYGLTTY
                     KIVPPKSEMRCYDRDVSLSTGAIKIDELGNLVSPHMNGSRTISPPSAVVETDTPPIGK
                     VKEFWRRNSMEKYLNGPAECTIKRAPSTTITATPEKPQQDNGMKAAFTVTTPQQQPAS
                     QEYGAHLEEERSRPQSAVSCSVKVPASNPTDITFLKPQRRTSSQYVASAIAKKMGPPK
                     VHADVVRPHKATTEQCHEEAKLARSPPTRKDDAAPNLHSEARQHEHGTNQSSVCLPSN
                     PGVQLPAGGHPKVEVNSTYGKSSTQDYPAAVHRNSYFLPGRSSHRDRVSVGQSCGFNE
                     KQTTSNQKANSTSNFSQALDKAHPPPLLLAEARDSGRILMNGSARTPGNCEPPHSPKE
                     STLTSYIILQTEEKPSSLSTDGQDADDTLPSSIFGPKKKFKPVIQRPLPKDVSLHSAL
                     MEAIHSSGGREKLRKVNVTAEQTSEGRPKKPSYVEAESERSALLAAIRGHSGTLSLRK
                     VSSLASEELQSFRNAALGAPGLDKPQQEDLGLPPPPALPPPPAPAPQAPSASVTVSRF
                     STGTPSNSVNARQALMDAIRSGTGAARLRKVPLLV"
ORIGIN      
        1 ctggggagcg gcgcgcgggc acggggcggc gccgcggtgg gcgcggctga gccagtttgg
       61 cggggggcgg cgcaccttgc tcccgcgccc ggggtagccg cgtccgtctc tctccgcacg
      121 cccccgcccg cccggacgcc ccaggtcgct tccgtcctct cggcacggcc gctgtcctcg
      181 ctagccccgc gtgggaggac gatgggtcag cgcggaaaaa gtgaatgagg acggcggcgc
      241 cgcagccagc gccccagtcg gccggcagag caacccgccg gctccatgga cgcgccgcgt
      301 gcactggcgg ccaagccccc cacaggaagg aagatgaagg cccgtgctcc gccacctcct
      361 ggaaagcctg ctgcccagaa tgtccacagc gaacagaaac tgccccatga tgccaccctg
      421 ggatcccagc aaagcctggt ctacatgaag gaggcactgc agaacagcac cttggacatc
      481 accgtggttc tgcccagtgg actggagaag cagagtgtgg ttagtgggag ccacgcaatg
      541 atggacctac tggttgaact ctgccttcag aaccacctga atccttctca ccacgtccta
      601 gagatctggt cttctgagac ccaacagcct ttgagtttta agccaaatac gttgattggg
      661 tccttgaatg tgcatactgt acttctgaaa gaaaaagtcc ctgaagaaag agttaaacct
      721 ggcctaacca aggctcctga gaaatctgta cgactggtag tgaactacct gagaacgcag
      781 aaggctgtcg tgcgggtgag ccctgaggtg ccactacaga atattctgcc agtcatctgt
      841 gcgaagtgtg aggtcaaccc agaacacgtg attctgctca gagacaatgt tgccggggag
      901 gagctggagc tgtccaagtc cctgaatgaa ctagggatca aggagctgta tgcgtgggac
      961 aacagaagag ttcttctgac caaaacgcag tctgagcctt ccctgagctg tcaagaaatg
     1021 tttagaaaat catcacttgg caatgatgag acagacaaag agaagaaaaa gtttctggga
     1081 tttttcaaag ctaataaaag gagcaacagt aaggctgagc atcttgggct gtcaggtgca
     1141 gatagtgatg aggacccggc gaagtcagca tctggagggg acttgaacgg ctgcgtaaca
     1201 acacccaact caccatcctt gcattctcgg tccctaacac tgggtccctc cctctccctg
     1261 ggcaacatct ctggagtgtc tatgaagtca gacatgaaga agcgcagagc ccctcctcct
     1321 ccaagtccca agctgctggg tcaagacaag gtatcagaaa aggcctccct cagctcacag
     1381 gctgatctcc agaagaagaa gaggcgggcg ccagctcctc ctccaccaca gcagccacca
     1441 ccaagtcctg tggtccccaa ccgcaaggaa gataaggaag agaacaggaa gagcacagtg
     1501 ggtgttggac gtcaggtgcc acaaaagcct cccagaggca cagctcgggg cccaccccag
     1561 ttagtgctcc ccccgccccc accctaccct cctcctgaca cagatgtgac agagcctgtc
     1621 acctttcctg gggaaggcgc tggttccgag acctcagagc tgagacccaa actgagtctg
     1681 cctctggggc ctggcagcca ctgcagcatg ggtggagtct ctcaggtgcc agcggagagt
     1741 gaggagacag catctgagga cacaaccgag gactcggggg tcatgagctc tccctcagat
     1801 gccatctccc tggactcaca acaagacagc atgagatcca aggacaaatg gtccacagac
     1861 caggaagacg gcagtgacca ggacctggct ggaactccag aactgggtcc ccaaaagagc
     1921 ccatcatggg ggaaaagtgg ttcaggaagc tcaattctaa ggactgagaa agccaccatg
     1981 cctaccaatg atgatgaaga cctattcatc actggccact tacatcagac cctggcagaa
     2041 cttgatgaag acctggaagg aatggaagaa aattatgaaa cagatactag ctctctaacc
     2101 aactctgtca atggtgtatc caaccacagt ctgcaagaag ccataatccc tgatagtggc
     2161 gtggatgaca tcccagtcac ttttatcggg gaagtttctg atgagccttt tgactcaggg
     2221 ctgttctcca gtagatgtaa caatgccact acttttaaca cggggagcat tgctagccaa
     2281 agatctcatc tgtccccatc tcagactgag catagccagc cattcgtaag gacaagtaga
     2341 aaagagcctg atccctcccc tccttcccaa gataacagga agagaaatca gccaacctta
     2401 gccaacacat ctgaaaatga gaatccagtt gaaacagacc ccacagttac atcacttgtt
     2461 tcaaagcttt taatagatga cccaaaagca aaggataaag gcaaagtgca tggttctagt
     2521 cacagtgaga agacacaggc aggtcatgga ataaactcac tgcgagtgaa tccaagagat
     2581 ggtaaggatg agagctccaa ttcagcaccc ccaccatggt ctcatcatgg ccaggcctta
     2641 gggggaagct atggactcaa gtatggcctc acgacatata aaattgttcc tcccaaatca
     2701 gagatgaggt gttatgacag ggatgtgtcc ctctccactg gtgccattaa gattgatgaa
     2761 ctagggaatc tggtgagtcc tcacatgaac ggaagcagga ccatatcccc accatcagct
     2821 gttgtcgaaa cagacactcc acctattgga aaagtcaaag agttctggag gcgcaactca
     2881 atggaaaagt accttaatgg gccggctgag tgcactatca aaagggcccc ctccaccact
     2941 atcactgcca caccagaaaa accacagcaa gataatggga tgaaggcagc cttcacagtg
     3001 accactcccc agcagcagcc tgcctcacag gaatatgggg cacacctgga ggaagagaga
     3061 agccggccac agtcagcagt ctcttgttct gtgaaagtgc cagcatctaa tcccacagac
     3121 atcacattcc tcaagcctca aagaagaaca tccagccagt atgtggcctc tgctattgcc
     3181 aagaagatgg ggcctccaaa agtccatgct gatgtggtga gaccacataa ggcaaccact
     3241 gaacagtgtc atgaagaagc aaagctggct agatctcctc ccaccaggaa agatgatgca
     3301 gctcccaacc tacactcaga ggcaaggcag catgaacatg ggacaaacca gagctctgtc
     3361 tgccttccca gcaaccctgg tgtgcaattg ccagcaggag gccatcccaa agtagaggtc
     3421 aacagcacat atgggaagtc atcgactcaa gactatcctg ctgctgtcca cagaaactcc
     3481 tatttcctcc caggcagatc ttcccatagg gatcgtgttt ctgtgggaca gagctgtggt
     3541 ttcaatgaaa agcaaactac aagtaaccaa aaggcaaatt caacatctaa cttctcgcag
     3601 gcactggaca aggcgcatcc accccctctg ctcttggcag aggcccgtga ctctgggagg
     3661 atactgatga atggctctgc acgaacccca ggaaattgtg agccccccca ctctccaaaa
     3721 gaatccaccc tgactagcta tattatctta cagacagagg aaaagcccag ttcgttatct
     3781 acagatggtc aagacgcaga tgatactcta ccgtccagca tttttgggcc aaagaaaaag
     3841 ttcaagcctg tcattcaaag gccactccca aaagatgtat ccctgcacag tgccctgatg
     3901 gaagctatcc actcatcagg agggagagaa aagctccgga aggtgaatgt gactgcagaa
     3961 cagacgtcag aaggaaggcc aaagaaacca tcctacgtgg aggcagagag tgagcgatct
     4021 gcccttctgg cagccattcg gggtcacagt gggactctca gcctcaggaa ggtgtcatcc
     4081 cttgcctctg aggagctcca gagcttccgc aatgctgcac tcggggctcc aggtttggat
     4141 aaacctcagc aagaagacct tggccttcca cccccacctg ccctgccacc accacccgct
     4201 ccagcccccc aggctccttc agcctccgta acagtttcta ggttcagcac cggcaccccc
     4261 agcaactcag tgaatgctag acaagccttg atggatgcca tccgctcggg cacaggagct
     4321 gcaagactaa gaaaggttcc cttgctcgtg tgaagtccta ccactgaaga gaccacctgt
     4381 acagctccaa gtatcatcac tttagaaatc cacatgacag gaaatgaaac cttcaagaag
     4441 tggcggtact ttcctgtctc caggccaact tgcccacggt ggattttcag tgttcctaca
     4501 taatggtcaa agaggagata ctgctttgct gtgtgacttg tgtgccaagg acatatgatc
     4561 tgcctctgaa tgctcacagt tgccaataaa ctgctcttgt tggcagagta atgggaatac
     4621 acaggctgga gcccagcact cacacttgat tttagctatg ggcacaagga attatgccct
     4681 aagttgattt ttggatcttt gagactttga ccacatacac atggttaaaa tcacttatga
     4741 tcctttgaat tctaggtgta caaaaacata aatcaacaga aatagtcaga atctattaca
     4801 tgctccagga tgctgcttct ggagtaagaa gcaccatgga ggaaggctgc tgagatgact
     4861 tttgcaggat aagaaagcgt cagattcgta tttgtattcc tcacacagtg aagcctcaca
     4921 cctcacagat gatcttggac tgtgatctga ccaactagct tttaaaattc cactgttgct
     4981 gcccagaata gcagccctac ttgaccctct gagcaagaca ttcctggctc cttagaagat
     5041 gatgggaagc agagatgaga acactggaag ggttgtccgt tttctgtata gatgtgtccc
     5101 acttgtatag tttcccccct cccccatccc cagtgtccca gaaggctatg acatgcatca
     5161 ggttactgtg aaggagcctt gcatggagcc tgagatttca ccagtagcct tctgaaatcc
     5221 tgcacagggc cagagagcag agtgttgagg acctatatgt agcagagggc agtccacatt
     5281 gtgctgcaca ttctgtggct tacattttat cctgacacac tttggcatgg tccagcagct
     5341 gccctggtat tatatgacat tcttatagta cattgtgggt agacaccatc tttaaagaat
     5401 ttaaactcag caggaagttt tgtgattttt tttaatgtat ctctaaaacc ttttcttata
     5461 tggagaaaat caagacagca atataagtca aaatgagttc atgatataaa atctctgcct
     5521 tactgaaaaa aaaatgaaat ccttttacta tttccccctg ttttaaatct aggcatcggg
     5581 tagagtggga acttggtatt gtgtgattaa cattgctaaa ctttctcagt gaggcaagag
     5641 ctaccagcca attgctctta gtcacagctg tctgctcttt ctcttagtgc cacaaataaa
     5701 tgcaaatcca atgctgtaa
//
