LOCUS       NM_027250               2876 bp    mRNA    linear   ROD 11-JUN-2024
DEFINITION  Mus musculus cytochrome c oxidase assembly factor 7 (Coa7), mRNA.
ACCESSION   NM_027250
VERSION     NM_027250.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2876)
  AUTHORS   Kozjak-Pavlovic,V., Prell,F., Thiede,B., Gotz,M., Wosiek,D., Ott,C.
            and Rudel,T.
  TITLE     C1orf163/RESA1 is a novel mitochondrial intermembrane space protein
            connected to respiratory chain assembly
  JOURNAL   J Mol Biol 426 (4), 908-920 (2014)
   PUBMED   24333015
REFERENCE   2  (bases 1 to 2876)
  AUTHORS   Kim,S.C., Sprung,R., Chen,Y., Xu,Y., Ball,H., Pei,J., Cheng,T.,
            Kho,Y., Xiao,H., Xiao,L., Grishin,N.V., White,M., Yang,X.J. and
            Zhao,Y.
  TITLE     Substrate and functional diversity of lysine acetylation revealed
            by a proteomics survey
  JOURNAL   Mol Cell 23 (4), 607-618 (2006)
   PUBMED   16916647
REFERENCE   3  (bases 1 to 2876)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL627238.15.
            
            On May 1, 2007 this sequence version replaced NM_027250.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK044999.1, AK081388.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               AL627238.15        54746-54884
            140-280             AL627238.15        58805-58945
            281-2876            AL627238.15        64717-67312
FEATURES             Location/Qualifiers
     source          1..2876
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.44 cM"
     gene            1..2876
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /note="cytochrome c oxidase assembly factor 7"
                     /db_xref="GeneID:69893"
                     /db_xref="MGI:MGI:1917143"
     exon            1..139
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             34..729
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /note="hcp beta-lactamase-like protein C1orf163 homolog;
                     sel1 repeat-containing protein 1; beta-lactamase hcp-like
                     protein; Sel1 repeat containing 1; respiratory chain
                     assembly factor 1"
                     /codon_start=1
                     /product="cytochrome c oxidase assembly factor 7"
                     /protein_id="NP_081526.1"
                     /db_xref="CCDS:CCDS18449.1"
                     /db_xref="GeneID:69893"
                     /db_xref="MGI:MGI:1917143"
                     /translation="MAGLVDFQDEEQVKSFLENMEVECHYQCYREKDPEGCYRLVDYL
                     EGIQKNFDEAAKVLKFNCEKYGHGDSCYKLGAYYVTGKGGLTQDLKAASSCFLMACEK
                     PGKKSVESCHNVGLLAHDGQVNEDGQPDLGKARDYYSRACDGGYAASCFNLSAMFLQG
                     APGFPKDMGLACKYSMKACDLGHVWACANASRMYKLGDGVDKDEAKAEVLKNRARQLH
                     KEQQKNVQPLTFG"
     exon            140..280
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /inference="alignment:Splign:2.1.0"
     exon            281..2876
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      865..870
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /note="hexamer: AGTAAA"
     polyA_site      886
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /note="major polyA site"
     regulatory      2160..2165
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /note="hexamer: AATAAA"
     polyA_site      2180
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
     regulatory      2631..2636
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
                     /note="hexamer: AGTAAA"
     polyA_site      2653
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
     polyA_site      2868
                     /gene="Coa7"
                     /gene_synonym="2010305A19Rik; D4Ertd796e; Selrc1"
ORIGIN      
        1 ggagccacaa agcgatttgt gggagtcgga atcatggcgg gcttggttga cttccaggac
       61 gaggagcagg tgaagtcctt cctggagaac atggaggtgg agtgtcacta ccaatgctac
      121 cgcgagaagg acccggaggg ttgctatcgg ctggtggact atctggaagg aatccaaaag
      181 aattttgatg aagccgcaaa ggtgctgaag ttcaactgtg agaaatacgg gcatggtgac
      241 agctgttaca agctgggggc ttattacgtg actggcaaag gtggcctgac tcaggaccta
      301 aaggctgcct cttcctgctt tctgatggcc tgtgagaaac caggaaagaa gtctgttgaa
      361 tcctgtcaca acgttggact actggcgcat gatggacagg tcaatgagga tggccagcct
      421 gacctgggga aggccaggga ctactacagc agggcctgtg atggtggcta tgcagccagc
      481 tgcttcaacc tcagtgccat gtttctacag ggtgcccctg gctttcctaa ggacatgggt
      541 ctggcgtgta aatattcaat gaaggcctgt gacctgggcc atgtctgggc ctgcgccaat
      601 gccagccgca tgtacaagct gggagatggt gttgataagg acgaggccaa ggctgaagtg
      661 ctgaaaaaca gggcccggca gctgcacaaa gaacagcaga aaaacgtcca acctctaaca
      721 tttgggtagt gcgttgccca gccccctttc cagcaacaga cgattcaccc tggcagctcc
      781 tctcccaccc gagaggagcc cttggaggtc actcagtgcc atctgctcca gcttgtcacc
      841 tgctgggagt ggctagagtg ttttagtaaa tgatcctttg tgtgtactct gtgaagacac
      901 ctacgtttat gggggtgtgt cttaatttct aaactggacc tgtgagagga gtaaacggca
      961 gagccgtaga cttttggggg ctggggagac aaagagaagt tgggaaactt agcagcctgg
     1021 gcctgaaaga atcagccatc gttatcattt tagttggaag agcttgaaaa ttagaaagta
     1081 tcctaatttg cataacagag gtcttagaac atggaggcag tcacgactgc cgccctctgc
     1141 cttacgtaac ccagccgtgg tgtgtggtgt gggctccttg tcgatgcagt cagacctttc
     1201 cgcagactta gagggatcag gggcctcgtg ctgaagaagg ctgaggtggt tacattagcc
     1261 ttgcttcccc tcctctcgac aaatctctgc agttcaaaat tagcctctcg actggctctg
     1321 ctcctccagg gaagacagat gactctggaa gcagctccag ctaggaattt gggacatgat
     1381 gacaggaagc tgtccactga gcctctcctc tcttctcccc tcccctcccc tccccttttc
     1441 ttttctttct ttttcaaaca gacccttgtg ctgccttctg ctggccttgc cctagccctg
     1501 ccccagcccc actggtgctg gggttacagg cacgcaccac tgtgccaggc aggactgagt
     1561 ctgttaaaca ggcgaatgca gtgtttcagg tgcttttcca tctgctgtgc tgctgttctc
     1621 cagatcctgg caggatgcag tgtgttcatc atggtgtgta tgtgtgtgtg cccttttaag
     1681 aattttttcc cttctgttgt aactctactt gtcaccaggg ggcgagcttg tcctttttct
     1741 ctgataattc taccgttgtc tgtcactacc ctggtccccc tatgtggcag tgtggcagct
     1801 agcttcccaa gaagacaggc ttgcctttga aggttgagag cacagccccc tgccttccga
     1861 agtccattca ggagagagtt tttcctgagt gcagaaacag cttttaaaag acatcaagtt
     1921 tgttttcaga atgtcttgaa aatagtattt ggtgtgattg aacaccatag gccaatgagc
     1981 attggaaagg tgctaatcat gcctgggcaa ctacataaaa accacaggaa cacttctgca
     2041 gtgcctgatg acccacgttt agtccctgag agcgagcgca cagtggaagt agacagctga
     2101 ttcctgcaca ttgccctcta acccacaaag gagtgcacac acaatcaatg aatacatgta
     2161 ataaaacacg tgaaacaaga caaatgattt ttaaaaagcc atgtgtggtg gtgcactttg
     2221 gaggcagaga cagcctggtg cacataggaa gttccagggg tacatagtga gaccctgtct
     2281 aaagaagaaa aaaaaaaaaa gaaagaaatg gcaaatgtat gtgtgagatg ccctctgcag
     2341 catgacagga ggggtgcaga ctgcactgca cacactgctg tgactagagg ggccacacac
     2401 caacgcagga ggaatgcaga gtggcaggga cgtgcatcac gaactgggac acagtggcac
     2461 agccacttgc agagacagta tttaaaggaa acgtacagca tcttttggta atcttgtccc
     2521 tttataattc cccaggggaa ttagaaatat gctcgtacca aaatgcatgt gcattttctt
     2581 aggagcctgt ttataattgc caaaacttgg aagcagtgac ggtgtccttc agtaaacaca
     2641 aggataaatg gtacattcag tgatggaata tttacttcag aaaagaatca caaaagacag
     2701 agagggccct attgaatgaa aggccaacca atccattctg gattacaact ggaggatact
     2761 ggtatcctca aaaagtggac ccatactttt ggtcttagat ttggagacag agacgggtga
     2821 tctcttgagt tggaggccat ttagggttag atataacaac tttgtcatga aaaacc
//
