LOCUS       NM_174987                736 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus cytochrome c oxidase assembly factor 6 (Coa6), mRNA.
ACCESSION   NM_174987
VERSION     NM_174987.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC151908.8.
            
            On Feb 2, 2022 this sequence version replaced NM_174987.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK009404.1, BY709155.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-303               AC151908.8         55063-55365         c
            304-736             AC151908.8         52458-52890         c
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 74.08 cM"
     gene            1..736
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /note="cytochrome c oxidase assembly factor 6"
                     /db_xref="GeneID:67892"
                     /db_xref="MGI:MGI:1915142"
     exon            1..303
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..399
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /codon_start=1
                     /product="cytochrome c oxidase assembly factor 6 homolog"
                     /protein_id="NP_778152.1"
                     /db_xref="CCDS:CCDS52709.1"
                     /db_xref="GeneID:67892"
                     /db_xref="MGI:MGI:1915142"
                     /translation="MAAPSMKERQACWGARDLYWRCLDDNAEDAARCQKLRSSFEASC
                     PQQWIKYFDKRRDYLKFKEKFEAGGFQSSQSTENS"
     exon            304..736
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      621..626
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /note="hexamer: TATAAA"
     polyA_site      642
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /note="major polyA site"
     regulatory      716..721
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /note="hexamer: AATAAA"
     polyA_site      736
                     /gene="Coa6"
                     /gene_synonym="1810063B05Rik"
                     /note="major polyA site"
ORIGIN      
        1 aatcggcggc gggtactttc gcagtgagtt tccctgtgca gtcggtggac ctgcggggcg
       61 acaccgccgt gcgggaacca cagtccacac cgctctccca cgtaggctga gccccggtcg
      121 catgttgcgt ggcttcccgc gtgaccactg caggcaggaa tggcagcccc ttccatgaag
      181 gaaaggcagg catgctgggg tgcgcgcgac ctgtactggc gctgcctgga cgacaacgcg
      241 gaggacgcgg cccggtgcca gaagctgagg agctcgttcg aggccagctg cccccagcag
      301 tggataaaat attttgacaa aagaagagac tacttaaaat tcaaggaaaa atttgaagca
      361 ggaggattcc agtcttcaca gtcgactgaa aattcctagg ctctttctgg actttcacac
      421 aagtggaatt tactcctctg gacttgcaga aatgattcca ggacaaaagc agcttgagtc
      481 acagtgtgta tcagcacttg ttctctgtaa acaagagtta ctaaattgtt ggaatagcaa
      541 aagatctcat catccaaact atgaaggact gccttaatta aagtgaggga tctattctaa
      601 gaaaaagcat aaaatcatta tataaaaagt ttattataaa aatacattgt ttattttcct
      661 ttcccccttt ggaataagag ctgcatatta ggcaaatata gttgcacata aaataaataa
      721 aaactaagat aggtta
//
