LOCUS       NM_007727               5865 bp    mRNA    linear   ROD 08-AUG-2024
DEFINITION  Mus musculus contactin 1 (Cntn1), transcript variant 2, mRNA.
ACCESSION   NM_007727 XM_017316422
VERSION     NM_007727.3
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5865)
  AUTHORS   Yu,H.L., Liu,X., Yin,Y., Liu,X.N., Feng,Y.Y., Tahir,M.M.,
            Miao,X.Z., He,X.X., He,Z.X. and Zhu,X.J.
  TITLE     Netrin-1 Is an Important Mediator in Microglia Migration
  JOURNAL   Int J Mol Sci 25 (13), 7079 (2024)
   PUBMED   39000184
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5865)
  AUTHORS   Ogawa,Y., Lim,B.C., George,S., Oses-Prieto,J.A., Rasband,J.M.,
            Eshed-Eisenbach,Y., Hamdan,H., Nair,S., Boato,F., Peles,E.,
            Burlingame,A.L., Van Aelst,L. and Rasband,M.N.
  TITLE     Antibody-directed extracellular proximity biotinylation reveals
            that Contactin-1 regulates axo-axonic innervation of axon initial
            segments
  JOURNAL   Nat Commun 14 (1), 6797 (2023)
   PUBMED   37884508
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 5865)
  AUTHORS   Zhang,L., Zeng,Z., Lu,X., Li,M., Yao,J., Zou,G., Chen,Z., Li,Q.,
            Li,C. and Li,F.
  TITLE     CNTN1 in the Nucleus Accumbens is Involved in
            Methamphetamine-Induced Conditioned Place Preference in Mice
  JOURNAL   Neurotox Res 41 (4), 324-337 (2023)
   PUBMED   37014368
  REMARK    GeneRIF: CNTN1 in the Nucleus Accumbens is Involved in
            Methamphetamine-Induced Conditioned Place Preference in Mice.
REFERENCE   4  (bases 1 to 5865)
  AUTHORS   Cifuentes-Diaz,C., Canali,G., Garcia,M., Druart,M., Manett,T.,
            Savariradjane,M., Guillaume,C., Le Magueresse,C. and Goutebroze,L.
  TITLE     Differential impacts of Cntnap2 heterozygosity and Cntnap2 null
            homozygosity on axon and myelinated fiber development in mouse
  JOURNAL   Front Neurosci 17, 1100121 (2023)
   PUBMED   36793543
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5865)
  AUTHORS   Company,V., Murcia-Ramon,R., Andreu-Cervera,A., Aracil-Pastor,P.,
            Almagro-Garcia,F., Martinez,S., Echevarria,D. and Puelles,E.
  TITLE     Adhesion molecule Amigo2 is involved in the fasciculation process
            of the fasciculus retroflexus
  JOURNAL   Dev Dyn 251 (11), 1834-1847 (2022)
   PUBMED   35727300
REFERENCE   6  (bases 1 to 5865)
  AUTHORS   Kohrman,D.C., Plummer,N.W., Schuster,T., Jones,J.M., Jang,W.,
            Burgess,D.L., Galt,J., Spear,B.T. and Meisler,M.H.
  TITLE     Insertional mutation of the motor endplate disease (med) locus on
            mouse chromosome 15
  JOURNAL   Genomics 26 (2), 171-177 (1995)
   PUBMED   7601440
REFERENCE   7  (bases 1 to 5865)
  AUTHORS   Pernas-Alonso,R., Schaffner,A.E., Hansen,C.T., Barker,J.L. and di
            Porzio,U.
  TITLE     Acetylcholine esterase and peripherin mRNA level decrease in
            wobbler mouse
  JOURNAL   Neuroreport 6 (4), 597-600 (1995)
   PUBMED   7605908
REFERENCE   8  (bases 1 to 5865)
  AUTHORS   Narisawa,S., Hasegawa,H., Watanabe,K. and Millan,J.L.
  TITLE     Stage-specific expression of alkaline phosphatase during neural
            development in the mouse
  JOURNAL   Dev Dyn 201 (3), 227-235 (1994)
   PUBMED   7533563
REFERENCE   9  (bases 1 to 5865)
  AUTHORS   Faivre-Sarrailh,C., Gennarini,G., Goridis,C. and Rougon,G.
  TITLE     F3/F11 cell surface molecule expression in the developing mouse
            cerebellum is polarized at synaptic sites and within granule cells
  JOURNAL   J Neurosci 12 (1), 257-267 (1992)
   PUBMED   1729438
REFERENCE   10 (bases 1 to 5865)
  AUTHORS   Gennarini,G., Cibelli,G., Rougon,G., Mattei,M.G. and Goridis,C.
  TITLE     The mouse neuronal cell surface protein F3: a
            phosphatidylinositol-anchored member of the immunoglobulin
            superfamily related to chicken contactin
  JOURNAL   J Cell Biol 109 (2), 775-788 (1989)
   PUBMED   2474555
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC162863.5, AC100736.5 and AC125460.4.
            
            On or before Aug 22, 2022 this sequence version replaced
            XM_017316422.3, NM_007727.2.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219382.186073.1,
                                           SRR9219379.46442.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               AC162863.5         84009-84167         c
            160-367             AC162863.5         6997-7204           c
            368-499             AC100736.5         156011-156142
            500-532             AC100736.5         160142-160174
            533-665             AC100736.5         168318-168450
            666-838             AC100736.5         171796-171968
            839-934             AC100736.5         174120-174215
            935-1141            AC100736.5         182586-182792
            1142-1241           AC100736.5         185423-185522
            1242-1423           AC100736.5         185656-185837
            1424-1548           AC100736.5         190554-190678
            1549-1666           AC100736.5         192092-192209
            1667-1817           AC100736.5         193605-193755
            1818-1945           AC100736.5         195542-195669
            1946-2127           AC100736.5         201168-201349
            2128-2248           AC100736.5         210929-211049
            2249-2407           AC100736.5         231303-231461
            2408-2557           AC100736.5         234683-234832
            2558-2628           AC100736.5         242649-242719
            2629-2863           AC100736.5         244724-244958
            2864-2967           AC125460.4         143087-143190       c
            2968-3154           AC125460.4         138471-138657       c
            3155-3267           AC125460.4         136006-136118       c
            3268-3424           AC125460.4         135072-135228       c
            3425-5865           AC125460.4         111192-113632       c
FEATURES             Location/Qualifiers
     source          1..5865
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 46.39 cM"
     gene            1..5865
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /note="contactin 1"
                     /db_xref="GeneID:12805"
                     /db_xref="MGI:MGI:105980"
     exon            1..159
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            160..367
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            368..499
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            500..532
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            533..665
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            666..838
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            839..934
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1141
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1241
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1423
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1424..1548
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1666
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..1817
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1818..1945
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            1946..2127
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2128..2248
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2249..2407
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2408..2557
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2558..2628
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2629..2863
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2864..2967
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            2968..3154
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            3155..3267
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            3268..3424
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     exon            3425..5865
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /inference="alignment:Splign:2.1.0"
     regulatory      5839..5844
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /note="hexamer: AATAAA"
     polyA_site      5865
                     /gene="Cntn1"
                     /gene_synonym="CNTN; F3cam; usl"
                     /note="major polyA site"
ORIGIN      
        1 actctgaggc cccggctact gctgtcaagt agctagggtg ggctccgcct aagcgaggag
       61 tggcgctggg ctggtgggag atgcgctccc agctgtttgc agcgggagcg ggaaagctgt
      121 agggccaggc agcgaggagg cgacaggagt ggggaacaga aaggaggggt atacagcgtc
      181 aactgcattt accgaggttt catacttacc cttctcaaaa gtcgccgctg ccgattgctg
      241 tgctcattaa attcattaag atgttgagtg gagagattgc tgagtggata aactcaggga
      301 gatggcctcg tggacaaaat gttgctgcat aagtgtggcg cctattgctg gaatccccag
      361 ttcccaggtc tttcatagta ctcaactgcc ataaagcttt cattactttt ggaaactgac
      421 ccatctattc aacaaaagat gaaaatgcca ttgctggtca gccatctcct gctaatctcc
      481 ttaacatctt gtctaggaga ctttacctgg cacagaagat atggtcatgg agtgtctgag
      541 gaggacaaag gatttgggcc catttttgaa gagcagccaa tcaataccat ttacccagaa
      601 gagtcactgg aaggaaaagt gtcactcaac tgccgggcac gcgccagccc atttccagtt
      661 tacaaatgga gaatgaataa cggggacgtg gacctgacaa acgatcggta cagtatggtc
      721 ggaggaaacc ttgttatcaa caacccggac aaacagaaag acgctggggt gtactactgc
      781 ctggcatcca acaactacgg aatggtcagg agcacggagg caactctgag cttcgggtat
      841 ctcgacccct ttcctcccga ggagcgtccg gaagtgaagg tgaaggaagg gaagggcatg
      901 gtgcttctct gtgatcctcc ctaccacttc ccagatgatc ttagctaccg ctggcttctg
      961 aatgaatttc ctgtatttat caccatggat aagcgaagat ttgtgtctca gaccaacggc
     1021 aatctctaca tcgcaaatgt cgagtcttct gacagaggca actactcctg ctttgtgtcc
     1081 agtccttcta ttacaaagag tgtgttcagc aagtttattc ccctcattcc gattcctgaa
     1141 cgaacaacaa agccatatcc tgctgatatt gtggtgcagt tcaaggacat atacaccatg
     1201 atgggccaaa atgtgacttt agagtgtttc gctctaggga accctgttcc tgatatccgg
     1261 tggcggaagg tgctagaacc aatgcccagc actgctgaga taagcacgtc aggggctgtc
     1321 ctcaagatct tcaacatcca gctagaagat gaaggcctct acgagtgtga ggctgagaac
     1381 atccggggaa aggacaagca ccaggcaaga atctatgttc aagcgtttcc tgagtgggta
     1441 gagcatatca atgacactga ggtggacata ggcagtgacc tctactggcc ttgcatagcc
     1501 acagggaagc ccattcctac catcaggtgg ctgaaaaatg gatactcgta tcacaaaggg
     1561 gaactgagac tgtatgatgt gacttttgaa aatgccggga tgtaccagtg catagcagaa
     1621 aacgcgtatg ggtccattta tgccaacgct gagctcaaga tcctggcttt agctccaact
     1681 tttgaaatga atcctatgaa gaaaaagatc ttggctgcga aaggtggaag ggttatcatt
     1741 gaatgtaaac ccaaggccgc accaaaaccc aagttttcat ggagcaaagg gacggagtgg
     1801 ctcgttaaca gcagcagaat actcatatgg gaagatggta gcttggaaat caataatatt
     1861 acaagaaatg atggtggaat ctatacatgc tttgcagaaa ataacagagg aaaagctaat
     1921 agcactggga ctctggtgat cacaaatccc acacgaatta ttttggcccc aatcaatgct
     1981 gacatcactg ttggggaaaa tgccaccatg cagtgtgctg cgtctttcga tcctgccttg
     2041 gacctcacgt ttgtgtggtc cttcaatggc tacgtgattg actttaacaa ggaaattacg
     2101 catatccatt accagaggaa ttttatgctc gacgccaatg gggaactgct catccgaaat
     2161 gcgcagctga aacacgcagg ccggtacacg tgcacggcgc agacaatcgt ggacaattcc
     2221 tcggcttccg ctgaccttgt cgttcgaggc cccccaggtc ccccaggagg cctgagaata
     2281 gaagacatca gagctacctc tgtggcactg acttggagcc gtggttccga caatcacagc
     2341 cctatctcta aatacacgat ccagaccaag acgattctct cagatgactg gaaagatgcg
     2401 aagacagatc ccccaatcat tgaaggaaac atggagtcag caaaagcagt ggatttgatc
     2461 ccttggatgg agtatgaatt tcgagtggtg gcgaccaata ctttagggac aggagagccc
     2521 agcataccct caaacaggat caaaacagac ggtgctgcac caaatgtggc tccctcagat
     2581 gtaggcggtg ggggcggaac caacagagag ctgacaataa cgtgggcgcc tttgtcgaga
     2641 gagtaccatt acggtaacaa ttttggttac atagtggcgt ttaagccatt tgatggagaa
     2701 gagtggaaga aagtgactgt gactaaccca gacactggcc gctacgtcca caaagatgag
     2761 accatgaccc cctccaccgc gtttcaagtc aaagtgaaag ccttcaacaa taaaggagat
     2821 gggccctaca gcctcgtagc tgtcatcaac tctgcacaag atgctcccag tgaagccccc
     2881 acagaggtag gggtcaaagt gttatcatcc tctgagatat ctgtccattg gaagcatgtg
     2941 ttagagaaaa ttgtggaaag ctatcagatt cggtactggg ctgggcatga caaagaagca
     3001 gccgcacaca gagttcaggt caccagccag gagtactcag ccagactgga gaaccttctt
     3061 cccgacaccc agtacttcat tgaagtggga gcctgcaaca gtgccggatg cggaccttcc
     3121 agtgatgtga tcgagacctt caccagaaaa gcccctccta gccaaccacc aaggatcatc
     3181 agttcggtga gatctggctc acgatatata atcacatggg atcacgttgt ggcactatcc
     3241 aatgaatcta ctgtgacagg ctacaagata ctctatagac cggatggcca acatgacggc
     3301 aagctgttct caacccataa acactccata gaagtcccca tccccagaga cggagagtat
     3361 gttgtcgagg ttcgagcaca cagcgacggg ggagacggag tcgtgtctca agtcaaaatt
     3421 tcaggcgtgt ccacgctgtc ttcgagtctc ctcagcttgc tcctgccctc ccttggcttt
     3481 cttgtctact cggaattctg aatgttacga ccttggctgt tttcatccct gctcagagga
     3541 tgctcttcat catgggatga ctgtaattcc ttctaatccc tgcggctcca tcctaagcca
     3601 aacaaattag actctaacaa gctgttcaac tgatttccca acacatcacg actgaggcat
     3661 tcaggaaccc cttcatccaa aagaataact ttcaagtgga aataaagtga tttttaactc
     3721 gttccaatat gccttataaa ccatttaacc tgattctgtg aaagttgcat gacttaaatc
     3781 aatggacaag ttacagtgtt caattcaatg ccctaggctg tagagtgaag gtcaccatac
     3841 acaggtgctt tacatgtttg acaagttgtg aaatataata gagattgaaa tgttgattgt
     3901 atgtagtatg tgttcgagta atgcagtctc ttgtattagc ctatatgttt gggttcctgc
     3961 ctatttttga aagaccctca tcattcatga tattttgagt tttccataaa attaaaacaa
     4021 aaaaaataga aaaaaaatca ttttgacata aacaccatta ccaaatcact ttactgaatg
     4081 agttggaagt ttttgactat gaaaaccaaa ttatagaact tactattatc agtattctta
     4141 tttttgatgt aattttctac acatttgctt ttcagaatcc ctaatactct tcagttagtt
     4201 ttctaatgct gacgttccca tgccacgtga ggattttttt tttttttttt acttttgtat
     4261 tctaatctga aattgttttg tgcttttctt ctcatcaatg tcaaaccaca gaagctgcag
     4321 cgcatctgga acattgtcta ctgctgtgtt tattcatgtg tggaatgaca ggtttgggga
     4381 agtagagcgc tttcatttat actgcaatgc gatcgtcttt atccagctag aaacaagtga
     4441 cagtaaagta tcagaatctc tgaatgttct cattgttctg gttttgtgct tcatgcctaa
     4501 gtataaactc tctttacaag aaggtgtaga gtcaagaatt catatgcagg tttggaaaaa
     4561 gctacagaat tccatttcaa gaagtttaaa gctcgtttcc catttcaatg caatactgaa
     4621 aactggctaa aaataccaaa tcagaatgtt gctaagtggt cctatgaaga atatgcaaag
     4681 ctgggaggca ggcgaggtcg gcagtgtcct gcgcgaggat gtctcccaag tgctgttgtg
     4741 aaggaatttg tgaggtgtga aagggaaacc tgtgtttcct cattgtccat ggtgtgccca
     4801 gagatgtgtc tgagtgtggg tgtggaagaa ctcgggtaat aaagaattag ctggctcctg
     4861 gagcagtgca atgtttggtt ccttgagaaa tcgaatccta ttttattagc acaatcttgc
     4921 tggctaatta gagacagagt ttatcttttt agaaaagata ccctataggt ccataaagaa
     4981 tatttacagg aaacaaaaat agatctatta atatgttacc cctatcttta atttgtataa
     5041 tttttgtact atatgtgtaa aggtttaaag tcctcattat gaaaatatca ataaatattt
     5101 cattaattta cacttaacac tttgttatac aaatgaaact ttttaaatcg gtaaaacaga
     5161 tgctctccca gtagaagcat gtcaacaaac catcgccagg tttcataaaa tatttaatga
     5221 tttgcaaaag aagaaaatga cttcatactt tagggagatg aacactctgt aagctttctg
     5281 tacaaacgtt gtgttttcct tgttatattc gggggttttc ctcttgcgat gtgacccatg
     5341 ttgggcattt ttgtatcatc aattaacaac tacatctttt gccaaatgca tgcctgcctt
     5401 ttccgttcta atatgtggta ataaagacca aaactggcta gattttgcat gaaaatggtt
     5461 ctgaaagata agaaaacaga ctttgaaggt tgtttagttt aaatatgtgg cggatagact
     5521 caactctctc atgcacaaat gacttctgct tttcatttcc tcatataatt gtacagatgt
     5581 gactgggacc atcagtttta aactgttgtc aagctaacca atgtatcaca tgctttaaga
     5641 tgcaagataa ttaattaaac tttatatagc tctagacaca tctgttgttt ctttgtattt
     5701 caggaaaggt aatagtagtt tcatttgata ctgataaata acgaattgat ttttttagtt
     5761 attttttatc attttcttca atggagtagt ataggactgt cgtttgtcct ttttatgaat
     5821 gaatacaaat tataaagaaa taaatgtctt actgttgccc aaaaa
//
