LOCUS       NM_026977               2469 bp    mRNA    linear   ROD 01-MAY-2024
DEFINITION  Mus musculus cyclin Pas1/PHO80 domain containing 1 (Cnppd1),
            transcript variant 1, mRNA.
ACCESSION   NM_026977 XM_006496540
VERSION     NM_026977.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2469)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2469)
  AUTHORS   Will,A.J., Cova,G., Osterwalder,M., Chan,W.L., Wittler,L.,
            Brieske,N., Heinrich,V., de Villartay,J.P., Vingron,M.,
            Klopocki,E., Visel,A., Lupianez,D.G. and Mundlos,S.
  TITLE     Composition and dosage of a multipartite enhancer cluster control
            developmental expression of Ihh (Indian hedgehog)
  JOURNAL   Nat Genet 49 (10), 1539-1545 (2017)
   PUBMED   28846100
REFERENCE   3  (bases 1 to 2469)
  AUTHORS   Werber,M., Wittler,L., Timmermann,B., Grote,P. and Herrmann,B.G.
  TITLE     The tissue-specific transcriptomic landscape of the mid-gestational
            mouse embryo
  JOURNAL   Development 141 (11), 2325-2330 (2014)
   PUBMED   24803591
REFERENCE   4  (bases 1 to 2469)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC173548.3, AK145962.1 and BE987844.1.
            
            On or before Sep 27, 2017 this sequence version replaced
            XM_006496540.2, NM_026977.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145962.1, SRR7345562.897089.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-14                AC173548.3         18018-18031         c
            15-164              AK145962.1         1-150
            165-165             AC173548.3         17785-17785         c
            166-1749            AK145962.1         152-1735
            1750-1750           AC173548.3         11784-11784         c
            1751-2443           AK145962.1         1736-2428
            2444-2469           BE987844.1         1-26                c
FEATURES             Location/Qualifiers
     source          1..2469
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 38.6 cM"
     gene            1..2469
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /note="cyclin Pas1/PHO80 domain containing 1"
                     /db_xref="GeneID:69171"
                     /db_xref="MGI:MGI:1916421"
     exon            1..69
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            70..572
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            573..660
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             592..1815
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /codon_start=1
                     /product="protein CNPPD1"
                     /protein_id="NP_081253.1"
                     /db_xref="CCDS:CCDS15063.1"
                     /db_xref="GeneID:69171"
                     /db_xref="MGI:MGI:1916421"
                     /translation="MDLTGLLLDEEGAFSLTGFQDFMVLPGHQKLSARIRRRLYYGWD
                     LETDCSLEELSSPVADITVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVY
                     IERLRHRNPDYLQHVSSSDLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVATLN
                     ALERSFLSAMDWRLYTDPREIFEVLSWLESCVAEQQGRRRGWYTYTDLCVLLEQPTWQ
                     LALGSLCQRLVKLSCLLAVAYVSSVALAVASVAVIHQSLGLSSSPSPGPPELTLVSKS
                     LVQPCVPAPVSQCLTNVSSCLEGSVDLPSLWGSLLAPLTPPLRPPPDPPAPPTPLHKC
                     PLCQKFQRLPPNCRACHTNQTVSIGPSRPLYHARGLAPPWLWSPVAPPFLQPQQCSLF
                     SVMELAHLKSVISPG"
     exon            661..769
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            770..851
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            852..972
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1101
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1163
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1164..1281
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..2452
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2425..2430
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2444
                     /gene="Cnppd1"
                     /gene_synonym="1810031K17Rik"
                     /note="major polyA site"
ORIGIN      
        1 gccctaacag cccggatggg acgcccgcgc gtgcgcgttg gccgctgtcg tgatcctgca
       61 cccacgaagg gcggctggag acctctttgt cgcgtgaggc actgcccaga ggcagtgagt
      121 gggctttcag gcccccagga tcttgactac aatctgcttg ggatcgggaa gggcggtgcc
      181 atccccatta ctcaaccctc ttcgcctcca gtcccctccc ctcagcggat aaacaaacac
      241 cagcgcgtga ctttaatgac ttcaaagcag cttcaccaac ttcgaaaagt tgtttcttcc
      301 ttcttggagc gtcggccctc tctcttccca aaatctctca gccgcaaatt gtgtggaagg
      361 agtgtttgga aataaaacat ccaggcgctg tttgctttgg ggagacctgt ttaacatcgt
      421 acattgaggc tttatatctt ttgagatcat ttaattgctg gagtaaccat acagaataca
      481 gtatgtattc gagtgttaca gtttcaaact tctaaggggc ataaagattc aacagattcc
      541 ctcccacctt gttcacagtt ctcccaccta cgggtggcgg ctgacagtgc gatggacctg
      601 actgggctcc tgctggacga agaaggcgcc ttctccctca ccggtttcca agacttcatg
      661 gtccttccag gacaccaaaa gctaagtgct cgaatccgaa ggagactcta ttatggctgg
      721 gacttggaga cagactgcag cctggaggag ctctccagcc ctgtggcaga cattactgtg
      781 gaacttcttc agaaggcagc acccagtcct attcgccgac tccagaaaaa atatgtagcc
      841 catgtgtccc gagaggcttg tatctcccct tgtgctatga tgctagctct ggtgtacatt
      901 gagcggctcc ggcaccgaaa cccagattat ctgcagcacg tgtcgtcttc tgatttgttt
      961 ctgatctcca tgatggtggc cagtaaatac ctttatgatg aaggggagga agaggaggtc
     1021 ttcaatgacg aatggggggc agctggggga gtcgccgtgg ccaccctcaa tgccttggaa
     1081 aggagcttcc tgagtgccat ggattggcgt ctctacactg atcctcggga gatctttgag
     1141 gtgctaagtt ggctggagag ctgtgtggct gagcagcaag gacggcggcg gggctggtac
     1201 acctacacag acctgtgtgt gctgctggag cagccaacgt ggcagctggc tctgggctcc
     1261 ctctgccagc ggctggtaaa gctgtcctgc ctgttagctg tggcatatgt gagcagcgtg
     1321 gccctagctg tagcatcagt ggctgtaata caccagtctt tggggctgtc ctccagcccc
     1381 tcaccaggtc ctcctgaact cacactggtc tccaagagcc tcgtgcagcc ctgcgtacct
     1441 gcccctgtgt cacagtgcct gactaatgtc tccagctgcc tggaaggcag tgtagacttg
     1501 ccatcactct ggggcagtct tctggcccca ttgactcccc ctctgagacc tcccccagac
     1561 cctcctgccc ctcctactcc tctccacaaa tgtccccttt gccagaagtt ccagagactc
     1621 cccccaaact gccgtgcctg ccacactaac caaacggtgt ctattgggcc ttcccgcccc
     1681 ctttaccatg cccgcggcct ggccccaccc tggctctgga gcccagtggc ccctccattt
     1741 ctccagcccc agcagtgttc gctttttagt gtcatggagc tggctcatct caagtctgtc
     1801 atttccccag gctaggtagg gctgtgagga gtacattgag agggtgtggg agtccttgag
     1861 aacctggaag aggaaaactt gatttagatt tttgctacct ctctgggccc ttggctggtc
     1921 ccctgtcctc ctgggtagga gcataaggga ttatgggggc attacaaggt cgttcactct
     1981 cctagacctc agagtctggc tagcaggcta ggacaccagt ggtgcctggg acagtgtcag
     2041 ctcagtgacc agaggcatgc cacagatgac agagaaccac ctatctctct gcctccacac
     2101 gcctagggaa gtagattttt tgttttgaag tttccaaaga tggaaaggta aaggtgggag
     2161 tgtgggaagc ggaggagagg attgatgtgg gtctctgtga tgtctctgag gctgagaacc
     2221 atgatgagag ctgctgagga ccaggaagct ccctgtcaca gccaagaatt gctgggtcct
     2281 ctaaccttgt ccctttgtct tccaaccgta gcatcctgct ccaaggcttc ccactctgcc
     2341 tttttgggtg ttctcttcac aggcctctct ggttaccact gctttgtatc tgggtttttc
     2401 acgcttttat agaattgagg tttcaataaa cagtttctgt tgcatggcct ggaaaaaaaa
     2461 aaaaaaaaa
//
