LOCUS       XM_030242407            2935 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus CCR4-NOT transcription complex, subunit 3
            (Cnot3), transcript variant X18, mRNA.
ACCESSION   XM_030242407
VERSION     XM_030242407.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030242407.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2935
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..2935
                     /gene="Cnot3"
                     /gene_synonym="A930039N10Rik"
                     /note="CCR4-NOT transcription complex, subunit 3; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 17 ESTs, 657 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 46 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:232791"
                     /db_xref="MGI:MGI:2385261"
     CDS             397..2652
                     /gene="Cnot3"
                     /gene_synonym="A930039N10Rik"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 3 isoform
                     X8"
                     /protein_id="XP_030098267.1"
                     /db_xref="GeneID:232791"
                     /db_xref="MGI:MGI:2385261"
                     /translation="MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKY
                     EADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKA
                     YSKEGLGLAQKVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDK
                     DKQDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPD
                     FEENEFLYDDLDLEDIPQALVATSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPAN
                     CTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSAL
                     SSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPS
                     AQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSASS
                     QALGPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVPLPVNPPSSPTP
                     SFSEAKAAGTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTDR
                     DIILSSTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPVSLTKEQLYQQAMEEAAWHHMP
                     HPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQ
                     YLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTF
                     EYRYLEDRDLQ"
ORIGIN      
        1 agagaggaga agagaggagg ggaggcctcc gccgccgcca tcttggaccg ggcccgttca
       61 gcttccgtgg agccgtcggc agccgctgcc gggcctttcc ttgatccctg aatcccctac
      121 tcggtcgtct agaacaatcc cgggcccact tcctctatca acaacccaac cctacttccg
      181 gctttcgcgc cctcttatcg cgatagcgcc cgggctcggg gcgcgaggaa agaggaaaaa
      241 aaaaaaaaaa aaaggcggcg ggcgggcgct cgcctctctc tcccccctcc tcgcctgtcg
      301 cgatacgctc cgcagcggcg gcgccagctc ctgcggtgag cgtcagcggc cattttcaag
      361 agagtatgaa gagagtgcgt ctgtagggca gggaagatgg cggacaagcg caaactccaa
      421 ggtgagattg atcgctgcct caagaaggtg tccgaagggg tggagcagtt tgaagatatt
      481 tggcaaaagc tccacaatgc agccaacgcg aaccagaaag aaaagtatga ggctgaccta
      541 aagaaggaga ttaagaagct acaacggctg agggaccaga tcaagacatg ggtagcatca
      601 aatgagatca aggacaaaag gcagcttatt gaaaaccgca agctcattga gacgcaaatg
      661 gaacggttca aagttgtgga acgagagacc aaaaccaaag cgtatagcaa ggagggtctg
      721 ggtctggctc agaaggtgga tcctgcccag aaggagaagg aagaagttgg ccagtggctc
      781 acgaacacca ttgacacctt aaatatgcag gtggaccagt ttgagagtga agtggagtca
      841 ctgtcggtac agacacgcaa gaagaaaggc gacaaggata agcaggaccg gattgagggc
      901 ttgaagcggc atatcgagaa gcaccgctac catgttcgta tgctggagac catcctgcga
      961 atgctggaca atgactccat cctggttgat gccatccgca agatcaagga tgatgtggag
     1021 tactacgttg actcatccca ggaccccgac tttgaagaga acgaattcct ctatgacgac
     1081 ctggacctcg aggacattcc acaggcgctg gtcgccacct ccccccccag ccacagccac
     1141 atggaggacg agatcttcaa ccagtctagc agtacaccca cctcaacaac ctccagctct
     1201 cccatcccac ccagcccagc aaactgcact acggaaaact ctgaagatga taagaagaga
     1261 ggccgatcta cagatagtga agtcagccag tctccagcca aaaatggctc caagcctgtc
     1321 cacagcaacc agcaccccca gtccccagct gtgccgccca cctacccctc tggcccccca
     1381 cctaccactt ctgccttgag ctccacccct ggcaacaatg gggcctctac cccagcagca
     1441 cctacaagtg ccctgggccc taaggccagt ccagctccca gccacaactc gggtactcct
     1501 gcaccctatg cccaggctgt ggccccacct aatgccagcg ggcccagcaa tgcccagcca
     1561 cggcccccca gtgcccagcc aagcggggga agtggtggtg gcagcggagg gagcagcagc
     1621 aatagtaaca gtggcacagg cggaggggct ggcaagcaga acggtgccac aagctatagt
     1681 tcggttgtgg cagacagccc tgcagaggtg accctgagta gcagtggggg cagcagtgcc
     1741 agcagccaag cccttgggcc cacttcgggc cctcacaacc cagctcccag cacctcaaag
     1801 gaatccagta cggcagcccc atcaggggct gggaatgtgg cttcaggctc agggaataac
     1861 tcggggggac ccagcctctt ggtgccactg cctgtaaatc cccccagttc tccaacgccc
     1921 agcttcagtg aagccaaggc agctggtacc ctgcttaatg gtcctccaca gttcagcacc
     1981 accccagaaa tcaaggcccc tgaaccactc agctctctga aatccatggc agaacgggca
     2041 gctatcagct ctggtattga ggaccctgtg ccaacgttac acctaactga tcgagacatc
     2101 atcctgagca gcacatcagc accacccacc tcatcccagc cacccctgca gctgtcagag
     2161 gtgaacatac cattgtcact gggtgtctgt ccactggggc cagtttccct caccaaggag
     2221 cagctatacc aacaggccat ggaagaggcc gcctggcacc acatgcccca cccctctgac
     2281 tccgagcgca ttcggcagta cctcccccgg aacccttgcc cgacaccccc ctaccaccac
     2341 cagatgccac ccccacactc ggacactgtg gagttctacc agcgcctgtc aactgagacg
     2401 ctcttcttca tcttctacta tctggaggga accaaggcac agtacttggc agccaaggcc
     2461 ctaaagaagc agtcctggcg attccacacc aagtatatga tgtggttcca gaggcacgag
     2521 gagcctaaga ccatcacaga tgagtttgag cagggcacct acatctactt tgactacgag
     2581 aagtggggcc agcggaagaa ggaaggcttc acctttgagt accgctacct ggaggaccgg
     2641 gacctccagt gacaccggcc cccctctacc ctctccctcc ctcgcatgct gatccccctg
     2701 cccaggtgag ggccctgccc tggaagactg ggggaggccc aaggccatgg gacaccctcc
     2761 cccccaggaa gcagggaagg gatagggagg ttttctcttc ctctctgccc taccctgggg
     2821 gcctgggggc aagggctgcc ccctcctccc ctccccagtg agggacattt tttggtaaac
     2881 ctattttcat tttggaaaat atttatgaat aaatagtttt atatgacggc tggca
//
