LOCUS       NM_028043               3306 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus CCR4-NOT transcription complex, subunit 11 (Cnot11),
            mRNA.
ACCESSION   NM_028043
VERSION     NM_028043.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Evsikov,A.V., Graber,J.H., Brockman,J.M., Hampl,A., Holbrook,A.E.,
            Singh,P., Eppig,J.J., Solter,D. and Knowles,B.B.
  TITLE     Cracking the egg: molecular dynamics and evolutionary aspects of
            the transition from the fully grown oocyte to embryo
  JOURNAL   Genes Dev 20 (19), 2713-2727 (2006)
   PUBMED   17015433
REFERENCE   2  (bases 1 to 3306)
  AUTHORS   Brady,K.P., Rowe,L.B., Her,H., Stevens,T.J., Eppig,J.,
            Sussman,D.J., Sikela,J. and Beier,D.R.
  TITLE     Genetic mapping of 262 loci derived from expressed sequences in a
            murine interspecific cross using single-strand conformational
            polymorphism analysis
  JOURNAL   Genome Res 7 (11), 1085-1093 (1997)
   PUBMED   9371744
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DV649843.1 and BC049091.1.
            
            On Feb 16, 2018 this sequence version replaced NM_028043.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049091.1, AK144692.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-101               DV649843.1         1-101
            102-3306            BC049091.1         1-3205
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 18.31 cM"
     gene            1..3306
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /note="CCR4-NOT transcription complex, subunit 11"
                     /db_xref="GeneID:52846"
                     /db_xref="MGI:MGI:106580"
     exon            1..637
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     CDS             139..1656
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /note="UPF0760 protein C2orf29 homolog"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 11"
                     /protein_id="NP_082319.1"
                     /db_xref="CCDS:CCDS14906.1"
                     /db_xref="GeneID:52846"
                     /db_xref="MGI:MGI:106580"
                     /translation="MPGGGASTASGRLLSSADPRGAREAAAFRSGPAGSSGGRGGAGG
                     PGPGIGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSV
                     LVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEP
                     DRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQL
                     ALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASRITESLVSGPKPPIESHFR
                     PEFIRPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLS
                     SPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSV
                     LVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVF
                     LQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKISK"
     exon            638..802
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     exon            803..955
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     exon            956..1158
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1361
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1458
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..3271
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1772..1777
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /note="hexamer: AGTAAA"
     polyA_site      1792
                     /gene="Cnot11"
                     /gene_synonym="2410015L18Rik; C40; D1Bwg0212e"
                     /note="major polyA site"
ORIGIN      
        1 cgttccgctc gtctgactta ggcactgttt ttgtttgcga cgctgtcgcg gaagggtgcg
       61 ctttacggcc gcgggaggac gcagcgagtc ggcgccttgg gcctctcggc cgggaagcgg
      121 ggtaggcggg cgaggttgat gcccggcggc ggggcgagca cggcgtctgg ccggcttctc
      181 tcctcagcgg atcccagagg ggcgcgggag gcagcggcgt tccggagcgg cccggcgggc
      241 tcgagcggag gccgaggcgg agcaggcggc cctgggccag ggattggagg ccccgcgggc
      301 aggatgagcc tgaccccgaa ggagctctcg agcctgctga gcatcatctc ggaggaggcg
      361 ggcggcggca gcaccttcga gggcctgtcc accgccttcc accactactt cagcaaggcc
      421 gaccacttcc gcctgggctc ggtgctggtg atgctgctgc agcagccgga cctgctgcct
      481 agcgcggcgc agcgcctcac ggcgctctac ctgctctggg agatgtaccg caccgagccg
      541 ctcgccgcca acccgttcgc ggccagcttc gcgcacctgc tcaacccggc gccgcccgcc
      601 cgcggcggcc aggagcccga ccggcccccg ctctcagggt tcctgcctcc tataactcca
      661 ccagaaaagt ttttcctctc ccagctcatg ctggcacccc caagggaact gttcaaaaag
      721 acacctcgcc agattgcctt gatggacgtt ggaaacatgg gacagtctgt ggacattagc
      781 ggccttcagt tagccctggc agagcgtcag tctgagctgc caacccagag caaagccagc
      841 ttcccaagca tcctcagtga cccagacccg gactcgtcca actctggatt tgacagctca
      901 gttgcctctc ggatcacaga gtctttagtc agtggcccaa agccacctat tgaaagccac
      961 tttcgaccag agtttatccg cccaccaccc cctctccaca tctgtgagga tgaactggcc
     1021 tggctaaatc ccacagaacc cgagcatgcc atccagtggg acagatcgat gtgtgtgaag
     1081 aatagcactg gtgtggagat caagcggatc atggcgaaag ccttcaaaag ccccctgtcg
     1141 tctccccaac agacacagct cctcggtgag ttggaaaaag atcccaaact tgtttatcac
     1201 attggcctta ctccagcgaa acttccagat ctagtggaga acaacccttt agtcgctata
     1261 gaaatgctgc tgaaactgat gcagtcaagc cagatcacgg agtatttctc tgtcctggtc
     1321 aacatggaca tgtccttaca ttcaatggaa gttgtaaatc gactaactac agctgttgac
     1381 ctacctcctg aatttattca cctatacata tccaattgca tttctacttg tgaacagatt
     1441 aaggataaat atatgcagaa tcgtttggtg cgtcttgtgt gtgtgtttct ccagtctttg
     1501 atccgtaaca aaattattaa cgtgcaggac ttgtttatag aagtgcaggc cttctgcatt
     1561 gaatttagta ggatacggga agctgcaggc ctattccggt tgctgaagac actggatact
     1621 ggggaaacgc cttcagagac caaaatatca aaataatacc tcactagaac ttccctttct
     1681 attgttcaac tgtatttgga ttggttttta aacttgtaac tcttgagtgg attgcttgat
     1741 ctaagaaata taaatgactt tatttactta aagtaaaatt tcctttttcc tagatgtttc
     1801 ccatggatga attttggtga gaacttggga gaaatgttta ttttagctct cttgctgatg
     1861 acaatccata tgaatagtta ttctgaaaat agttattgca agaaaggtgt aggtgttgct
     1921 cttttgaatt taaaacacag tacctgtttc ttttagaaaa caaactgtag gtttctgaaa
     1981 aaccaggaat ttgctttcgt agcttctagt gtgaagcatg gtcagtgaga gtgagtgaag
     2041 acgctgagaa tttacggtga gcgtggctct tagtaagcaa ggtgtgaaac aaggatgcac
     2101 atttctgaca acagtgttcc tggcccactg acaagcatgg gcactctgcc aggctgcgag
     2161 agttggcatt ttattcttct ctcttaacca cagttagtaa gggtgtggtt tttgtggtct
     2221 taaggacaaa tacgagctgg cacaccagaa atgtataccc aggatgcctg tttggtgagg
     2281 aggtagaaga gtcagtacct gggacagtgt gccttaattt ttttttttta agacagggtc
     2341 catctatgta attctggcgc tcactatgta gagcaggctg gccttgaaat cagagatcct
     2401 tctgcctctg catgctgtga ttaaaggtgt ataccaccaa atccagcctt tttaaaaaat
     2461 gtctgacata ccattttatt taaagaaatt atgaagaatt ccttttatgg agatatctct
     2521 agaaccgatt tatggggaca gaatctgttc tcccacatcc ggcaaggctt aaaggaagcc
     2581 aagcttggtg attttgtctt actgtacaat tacaatctcc taacagtgga gaaggaacaa
     2641 gaaacaataa tccttgcgcc cctgtgggag tgaccccctc tgaactagag agctgactcc
     2701 tctcaatgct ctgtagtggc cactgctatt ttacagatgg cactgggcca acaacagccc
     2761 atgaacaaag cactgtttta gaatgacaag tttcaaagac ttactgtggg caacaagctc
     2821 cacagctgat aggcatgtct tgtagctcag gttagctatg gccacagccc aacacaaaat
     2881 aaaaaatgta attaaaatga cagtagccag atgcagatac tcccaaccat tggactgaag
     2941 ttggggaccc ctatggttgg attagaggaa ggattgaaga agctgaaggg gaggaccaac
     3001 ccataggaag accagtgttc tcaactaaac ccgacccctg ggagctcccg aagactgagc
     3061 caccaaccaa gcagtaccat ggctgatcca agcacataca cagcagaggg ctgcctggtc
     3121 tggcctctgg gagaagatgc actcgatcct ttagagactt gaggcctctg ggaagggggg
     3181 aggtggggcg gggcacagaa ccttgggggt gggggtagga gtgggatggg ggagcaacag
     3241 ctgaaatgta aataaaataa tttacaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3301 aaaaaa
//
