LOCUS       NM_153585               2990 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus CCR4-NOT transcription complex, subunit 10 (Cnot10),
            mRNA.
ACCESSION   NM_153585
VERSION     NM_153585.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2990)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2990)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2990)
  AUTHORS   Du,H., Chen,C., Wang,Y., Yang,Y., Che,Z., Liu,X., Meng,S., Guo,C.,
            Xu,M., Fang,H., Wang,F., Lin,C. and Luo,Z.
  TITLE     RNF219 interacts with CCR4-NOT in regulating stem cell
            differentiation
  JOURNAL   J Mol Cell Biol 12 (11), 894-905 (2020)
   PUBMED   33104214
  REMARK    GeneRIF: RNF219 interacts with CCR4-NOT in regulating stem cell
            differentiation.
REFERENCE   4  (bases 1 to 2990)
  AUTHORS   Chen,C., Ito,K., Takahashi,A., Wang,G., Suzuki,T., Nakazawa,T.,
            Yamamoto,T. and Yokoyama,K.
  TITLE     Distinct expression patterns of the subunits of the CCR4-NOT
            deadenylase complex during neural development
  JOURNAL   Biochem Biophys Res Commun 411 (2), 360-364 (2011)
   PUBMED   21741365
REFERENCE   5  (bases 1 to 2990)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CA537067.1, AK029103.1 and CX222096.1.
            
            On Feb 16, 2011 this sequence version replaced NM_153585.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029103.1, BC039183.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-126               CA537067.1         1-126
            127-2979            AK029103.1         2-2854
            2980-2990           CX222096.1         569-579
FEATURES             Location/Qualifiers
     source          1..2990
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 64.72 cM"
     gene            1..2990
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /note="CCR4-NOT transcription complex, subunit 10"
                     /db_xref="GeneID:78893"
                     /db_xref="MGI:MGI:1926143"
     exon            1..282
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             261..2495
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /codon_start=1
                     /product="CCR4-NOT transcription complex subunit 10"
                     /protein_id="NP_705813.2"
                     /db_xref="CCDS:CCDS40794.1"
                     /db_xref="GeneID:78893"
                     /db_xref="MGI:MGI:1926143"
                     /translation="MAADKPADQGAEKHEGAGQSSGVTDQEKELSASALQAFTSGNYD
                     ACLQHLACLQDINKDDYKIILNTAVAEFFKNNQTTTDNLRQTLNQLKNQVHSAVEEMD
                     GLDDVENSMLYYNQAVILYHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYI
                     LTHQAEKALHLLAVLEKMISQGSGGKNGKNETGNNSSKDGSNPKAESAALIEAAKSKI
                     HQYKVRGYIQMKSLKACKREIKSVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSS
                     NIAEHPGFMKTGECLRCMFWNNLGCIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGG
                     TDPGKKFSGRPMCTLLTNKRYELLYNCGIQLLHVGRPLAAFECLIEAVQVYHANPRLW
                     LRLAECCIAANKGTSEQETKGLPTKKGIVQSIVGQGYHRKIVLASQSIQNTVYNDGQS
                     SAIPVASVEFAAICLRNALLLLPEEQQDPKQENGSKSSSQLGGNTESSESSETCSSKS
                     HDGDKFIPAPPSSPLRKQELENLKCSILACSAYVALALGDNLMALNHADQLLQQPKLS
                     GSLKFLGHLYAAEALISLDRISDAITHLNPENVTDVSLGISSNEQDQGSDKGENEAME
                     SSGKRAPQCYPSSVNSARTVMLFNLGSAYCLRSEYDKARKCLHQAASMIHPKEVPPEA
                     ILLAVYLELQNGNTQLALQMIKRNQLLPAVKAHSDVRKKTVFQPVHPIQPIQMPAFTT
                     VQRK"
     exon            283..377
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            378..539
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            540..690
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            691..833
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            834..920
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            921..1004
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1122
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1272
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1475
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1476..1597
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1598..1774
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1775..1855
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..1969
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2100
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2101..2136
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2137..2264
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2265..2340
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2341..2517
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2518..2983
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2734..2739
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /note="hexamer: TATAAA"
     polyA_site      2758
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
                     /note="major polyA site"
     polyA_site      2897
                     /gene="Cnot10"
                     /gene_synonym="2600001P13Rik"
ORIGIN      
        1 cccttggccg ctacgggacg gaagctgtgg atggcgggga aaacagccct gcaccggcgg
       61 atgtgttggc gctgttgcta gacgacgagc agtaacttcg tcacttcctc agcccgtggc
      121 ccgcccagga ccttagccga ggcgactgga gcgggcttga gctgaagagt tgtcccccgc
      181 cggtaggact caccaccagc ccggcggcgg gagtcggggc cacgccacct acagggagga
      241 actcgagccg aggcgggaag atggctgcag acaagcctgc agatcaggga gcagagaagc
      301 atgaaggggc aggccaatca tctggggtca cggaccagga gaaggagctg tccgccagtg
      361 ccctccaggc cttcacgtct ggaaattatg atgcctgtct gcaacacctt gcctgtctcc
      421 aagatataaa caaagatgat tacaaaatta ttctgaatac agcagtagct gaatttttta
      481 aaaataatca aacaacaaca gataatttga gacaaacact taaccagctg aagaatcagg
      541 tccactcggc tgttgaagag atggatgggt tagacgatgt tgagaacagc atgctgtatt
      601 ataaccaggc tgtcattctc tatcatctgc gccagtacac ggaggccata tctgtcggcg
      661 agaagctcta tcagttcata gaacctttcg aagaaaaatt tgcccaagcg gtgtgctttt
      721 tgctcgtaga cttgtatata ttaacccacc aggctgagaa agctctgcat cttcttgccg
      781 tcctagaaaa aatgatttca cagggtagcg gtggcaaaaa tgggaagaac gagactggca
      841 ataacagcag caaagatgga tccaacccta aggctgagag tgcagctcta atagaggctg
      901 ccaagtccaa gatacaccag tacaaagtca gagggtacat ccagatgaag tccctgaagg
      961 cttgcaaaag ggaaatcaag tctgtcatga acacagctgg aaattctgca ccttccctgt
     1021 ttcttaaaag caactttgag tacttaaggg gcaactatcg aaaagcggtg aagctgttga
     1081 atagttcaaa cattgccgag catccaggct tcatgaagac aggtgaatgc ttgagatgca
     1141 tgttctggaa taaccttggt tgtatccatt ttgccatgag caagcacaat ttggggattt
     1201 tctacttcaa gaaggctctg caggaaaatg acaacgtctg cgcccagctc agtgcgggtg
     1261 gcactgatcc aggcaaaaag ttttctggaa gacccatgtg tacattgctg accaacaaaa
     1321 gatatgagct gctctacaac tgtgggatcc agctgctgca cgtcgggagg cctctcgctg
     1381 ccttcgagtg tctgattgaa gctgttcagg tgtaccacgc gaatcctcgt ctctggctac
     1441 ggctggctga gtgctgcatt gctgccaata aagggacttc tgagcaagaa actaaaggtc
     1501 ttcccaccaa aaaaggcatt gtacagtcta ttgttggtca gggatatcac cgtaaaatag
     1561 ttctggcatc acagtcaatt cagaacactg tctacaatga tggtcagtct tcagccattc
     1621 ctgtagccag tgtggagttt gcagccatct gtctcagaaa tgccttgttg ctgttacctg
     1681 aagaacagca agatcccaag caggaaaatg gctccaagag cagcagccag cttggaggga
     1741 acacggaaag cagcgagagc agcgagacgt gcagcagtaa gagccatgat ggagataagt
     1801 tcattcccgc tccaccgtct tctccgctga ggaaacagga gttagaaaac ctcaagtgct
     1861 ccatccttgc ttgcagtgct tatgtggctc tggccttagg tgataacctc atggctttga
     1921 accatgcaga tcagctcctg cagcagccca agctgtctgg ctctcttaaa tttttgggcc
     1981 atttatatgc cgcagaagcc ctcatctccc tcgacaggat atctgatgcc attacacact
     2041 tgaacccaga gaatgtcact gatgtctcct tagggatctc ttcaaatgag caggaccaag
     2101 gatcagacaa gggtgaaaat gaagcaatgg aatcctctgg caagcgcgcc cctcagtgct
     2161 accccagttc tgtgaactct gcccggactg tgatgctctt caacctgggc agtgcctact
     2221 gcctgaggag cgagtacgac aaggcccgaa agtgtctgca tcaggcggca tcgatgatcc
     2281 atcctaagga ggtgccccct gaagccatcc tgctggctgt ctaccttgag ctgcagaatg
     2341 gtaatacaca gctggccttg cagatgatca agcggaacca gctgctcccc gcagtaaagg
     2401 cgcactctga tgtgaggaag aagacagtgt tccagcccgt gcaccccatc cagcccatcc
     2461 aaatgccagc gttcaccacc gtgcagagga agtgagagct tgcctcggga ggccagggga
     2521 acattgtggc aggaagacgg aagtagtgct ggagaggaga ctggagagaa acactgggcc
     2581 tgtccctgtg atgcacttct gccagcaagg ccacgcctcc cagtccctga agtgtcactc
     2641 cctgaagatg aagcattcaa atatgagtcg atgagagcca ttcttgttca cgtcgccata
     2701 gttatggagg ttggacccag cactcaagac tgttataaag aatttttgct ttggtttttg
     2761 ttgttgttgg tttgtgttgt ttttgttttc tggggggcgt ggggtagaga caaggtgcac
     2821 ccaagcctac cctcaatgac tcagtggctg agctgtgtca tcaccagacc tttgaaaagg
     2881 ttttggccat cattctagct ctctcttggt gtctctgtct ctctttcatg tcccctctcc
     2941 aagactgcct ttccccctcc ccgtcaatca atctgttgca gaaaaaaaaa
//
